Glyma08g13680 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g13680

Feature Type:	gene_model
Chromosome:	Gm08
Start:	10003744
stop:	10014805
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G05420	AT	Annotation by Michelle Graham. TAIR10: damaged DNA binding protein 1A \| chr4:2746288-2752663 FORWARD LENGTH=1088	SoyBase	E_val: 0	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0003002	GO-bp	Annotation by Michelle Graham. GO Biological Process: regionalization	SoyBase	N/A	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010100	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of photomorphogenesis	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0033043	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of organelle organization	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0048608	GO-bp	Annotation by Michelle Graham. GO Biological Process: reproductive structure development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1897	KOG	Damage-specific DNA binding complex, subunit DDB1	JGI		ISS
PTHR10644	Panther	DNA REPAIR/RNA PROCESSING CPSF FAMILY	JGI		ISS
PTHR10644:SF3	Panther	SPLICEOSOMAL PROTEIN SAP 130	JGI		ISS
PF03178	PFAM	CPSF A subunit region	JGI		ISS
UniRef100_G7L9M1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA damage-binding protein n=1 Tax=Medicago truncatula RepID=G7L9M1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KSU0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSU0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13680

Paralog	Evidence	Comments
Glyma05g30530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g171400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g13680

Limit To All Plant Sequences

>Glyma08g13680.1   sequence type=CDS   gene model=Glyma08g13680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTATATGGAACTACGTCGTCACGGCTCACAAGCCCACCAACGTCACCCACTCCTGCGTCGGCAATTTCACCAGTCCTCAAGACCTCAATCTCATCATCGCGAAATGCACGCGCATCGAGATTCACCTGCTTTCTCCCCAAGGCTTGCAGCCTATGTTGGATGTGCCGATATATGGAAGAATTGCAACACTTGAACTCTTCCGCCCTCATGGTGAAGCGCAGGATTATCTTTTTATTGCAACTGAAAGATACAAATTCTGTGTTCTTCAATGGGATTCCGAGACTGGTGAGCTTGTTACACGGGCAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGATGGTTTGTTTAAAGTTATTCCCTTCGACAATAAAGGACAGCTCAAGGAAGCATTTAATATAAGGCTTGAGGAGCTCCAAGTTTTGGATATCAAATTTCTTTATGGTTGTTCAAAGCCAACTATTGTGGTTCTTTACCAGGATAATAAAGATGCTCGTCATGTTAAAACATATGAGGTTGCACTGAAGGATAAAGATTTTGTTGAAGGTCCATGGTCCCAGAACAATCTCGATAATGGGGCTGATTTATTGATACCAGTTCCCCCACCTCTTTGTGGTGTGCTTATTATTGGGGAAGAAACCATAGTGTACTGCAGTGCTAATGCTTTCAAGGCTATCCCAATCAGACCTTCAATTACAAAAGCCTATGGAAGAGTTGATCCTGACGGTTCTCGATATTTACTTGGTGACCATACAGGGTTGGTTAGCCTACTTGTAATAATCCATGAGAAAGAAAAGGTTACGGGACTCAAAATTGAGCCCCTTGGGGAGACTTCCATTGCATCTACAATATCATACCTTGATAATGCATTCGTCTACGTTGGTTCAAGTTATGGAGATTCACAGCTAATAAAACTAAATCTACAGCCTGATGCAAAAGGTTCTTATGTGGAAGTATTGGAAAGGTATGTCAATTTGGGGCCTATTGTTGACTTCTGTGTGGTAGACCTCGAAAGGCAGGGCCAAGGTCAGGTTGTAACTTGCTCTGGAGCTTACAAGGATGGTTCTCTTCGTGTCGTTCGTAATGGAATAGGGATTAATGAACAGGCATCGGTAGAACTTCAAGGTATCAAAGGAATGTGGTCACTGAGATCCTCAACAGATGATCCTTTTGATACTTTTCTGGTTGTGAGTTTTATAAGTGAAACAAGAATCTTAGCAATGAATCTTGAGGATGAGCTGGAAGAAACTGAGATTGAGGGATTCTGTTCTCAAGTGCAGACTTTATTTTGCCATGATGCAGTTCATAATCAACTTGTTCAAGTTACTTCAAGCTCTGTCAGACTGGTCAGCTCCACAACTAGAGATCTTCGGAATGAATGGCATGCACCATCAGGCTATTCAGTAAATGTAGCTACGGCAAACGCTACCCAGGTTTTGTTGGCCACAGGAGGAGGGCATTTGGTTTACCTTGAAATTGGAGATGGCATATTACAGGAAGTAAAGCATGCCCAGCTAGAGTATGAGATTTCATGCCTGGACATAAATCCCATTGGTGAAAACCCCAATCACAGTAATCTAGCAGCAGTTGGAATGTGGACAGACATAAGTGTTAGAATTTTTTCTCTTCCTGATCTGAGTCTCATCACAAAGGAACAATTAGGAGGGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGGATATCGTACTTGCTATGTGCCCTCGGTGATGGCCATCTCTTAAACTTTATGTTGAATACTAGTACCGGTGAATTAACAGATAGGAAAAAGGTATCTCTAGGGACACAACCTATAACACTACGGACTTTCTCCTCCAAAAATACTACTCATGTATTTGCTGCATCTGATCGGCCAACTGTAATTTATAGTAGTAACAAAAAATTACTTTATAGTAATGTGAATCTGAAGGAAGTGAGTCACATGTGTCCTTTCAATTCTGCTGCTTTTCCAGACAGTTTGGCAATTGCAAAAGAAGGTGAGCTTACTATTGGCACTATTGATGATATACAAAAACTTCATATTCGCTCTATTCCGCTGGGGGAGCACGCACGACGTATCTGCCACCAGGAGCAATCTAGGACTTTTGCTATTTGTAGTTTGAAATACAACCCAGCTAGTGGTGAAGACTCAGAAATGCACTTTGTCCGCTTGCTGGATGACCAGACTTTTGAGTTCATATCAACTTATTCTCTTGACACTTATGAGTATGGTTGCTTCATAATTAGCTGCTCCTTCTCAGATGACAATAATGTGTATTACTGTGTTGGAACTGCATATGTACTGCCAGAGGAAAATGAACCAACCAAAGGAAGAATTATTGTTTTTGCTGTTGAAGATGGAAAACTACAGCTAATTGCCGAGAAAGAGACAAAAGGAGCTGTTTATTGCTTGAATGCATTTAATGGTAAATTGCTTGCAGCTATTAATCAAAAAATTCAGCTGTATAAGTGGGTGCTCCGGGATGATGGTACTCATGAATTGCAGTCTGAATGTGGACATCACGGACACATCCTAGCACTTTATGTGCAAACTAGAGGAGATTTTATTGTAGTTGGTGATCTGATGAAGTCAATTTCCTTGTTAATCTACAAGCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAGGTGCAGAAAACAGTTTTAATCTGTTCACTGTTCGGAAAAATAGTGAAGGTGCTACTGATGAAGAGCGAGGTCGTCTTGAAGTGGTTGGTGAGTATCACCTAGGAGAATTTGTCAATCGGTTCCGGCATGGCTCCCTTGTTATGCGCTTGCCAGATTCTGATGTGGGCCAGATTCCAACTGTTATCTTTGGCACCATTAATGGTGTTATTGGGGTAATTGCGTCTCTTCCACATGAGCAATATGTTTTCTTGGAGAAACTTCAGTCAAATTTGAGGAAGGTAATTAAAGGCGTTGGAGGGCTCAGCCATGAGCAATGGAGATCATTTAACAATGAGAAGAAAACTGTTGAAGCCAGAAACTTTTTAGATGGAGATTTGATCGAATCATTTCTGGATCTTAACCGCAGTAAGATGGATGAAATTTCCAAGGCAGTGGACGTTTCAGTAGAGGAGTTATGCAAGAGAGTAGAAGAGTTGACAAGGTTGCACTGA

Predicted protein sequences of Glyma08g13680

Limit To All Plant Sequences

>Glyma08g13680.1   sequence type=predicted peptide   gene model=Glyma08g13680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIWNYVVTAHKPTNVTHSCVGNFTSPQDLNLIIAKCTRIEIHLLSPQGLQPMLDVPIYGRIATLELFRPHGEAQDYLFIATERYKFCVLQWDSETGELVTRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDPDGSRYLLGDHTGLVSLLVIIHEKEKVTGLKIEPLGETSIASTISYLDNAFVYVGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRVVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQVQTLFCHDAVHNQLVQVTSSSVRLVSSTTRDLRNEWHAPSGYSVNVATANATQVLLATGGGHLVYLEIGDGILQEVKHAQLEYEISCLDINPIGENPNHSNLAAVGMWTDISVRIFSLPDLSLITKEQLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFMLNTSTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNPASGEDSEMHFVRLLDDQTFEFISTYSLDTYEYGCFIISCSFSDDNNVYYCVGTAYVLPEENEPTKGRIIVFAVEDGKLQLIAEKETKGAVYCLNAFNGKLLAAINQKIQLYKWVLRDDGTHELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEIVDDDIYLGAENSFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTINGVIGVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESFLDLNRSKMDEISKAVDVSVEELCKRVEELTRLH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain