SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21120 | AT | Annotation by Michelle Graham. TAIR10: amino acid transporter 1 | chr4:11270318-11273775 FORWARD LENGTH=594 | SoyBase | E_val: 0 | ISS |
| GO:0003333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transmembrane transport | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006820 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anion transport | SoyBase | N/A | ISS |
| GO:0006862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide transport | SoyBase | N/A | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0015696 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ammonium transport | SoyBase | N/A | ISS |
| GO:0015802 | GO-bp | Annotation by Michelle Graham. GO Biological Process: basic amino acid transport | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0043269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of ion transport | SoyBase | N/A | ISS |
| GO:0051938 | GO-bp | Annotation by Michelle Graham. GO Biological Process: L-glutamate import | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005313 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-glutamate transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015171 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015181 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: arginine transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015189 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-lysine transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1286 | KOG | Amino acid transporters | JGI | ISS | |
| PTHR11785 | Panther | AMINO ACID TRANSPORTER | JGI | ISS | |
| PTHR11785:SF53 | Panther | TRYPTOPHAN PERMEASE | JGI | ISS | |
| PF00324 | PFAM | Amino acid permease | JGI | ISS | |
| UniRef100_G7L9L7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: High affinity cationic amino acid transporter n=1 Tax=Medicago truncatula RepID=G7L9L7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023385B4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023385B4 related cluster n=1 Tax=unknown RepID=UPI00023385B4 | SoyBase | E_val: 0 | ISS |
|
Glyma08g13655 not represented in the dataset |
Glyma08g13655 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g30510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g129700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g13655.1 sequence type=CDS gene model=Glyma08g13655 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGGAAGAAGGTGGGAGCAGGGGTGCGCGGAGAAGGGGATGCACGTTTCAGAAGAACGATTTCTTCCCGGAGGAATCGTTCAAGAGCTGGGGTAGCTACGGAATAGCGTTGAGGGAGACGCCGTGGAAGTTTAAGAATCGGGTCATGACCCGATCCAAGGACGAGACGGAGGTGGTGGAGATGAAGGGGCGGAGCAGCAACGAGATGAAGAAGACGCTCAACTCGTGGGACCTCATATGGTTCGGCATCGGCGCCGTCATCGGCTCCGGCATATTTGTCATTACCGGCCTCGAGGCACGTGACGCTGCCGGTCCTGCTGTCGTCTTGTCCTACGTTGTTTCCGGCATCTCCGCCTTGCTATCCGTCTTTTGCTACACAGAATTCGCCGTCGAAATTCCCGTCGCAGGTGGGTCATTTGCGTACTTAAGGGTGGAATTGGGAGACTTCGTGGCGTTCATAGCCGCCGGAAACATCCTCCTGGAGTACGTAATCGGCGGTGCCGCCATATCGCGGTCATGGACCTCCTATTTCGCCACCCTCTGCAACCACCACCCAGACGAGTTCCGCATAATAATCCCCAACGTGAATCCCGACTACGGCCACCTGGACCCCATAGCCGTGGTGGTCCTCATAGCCATCGCCACCCTCGCAATGGTCAGCACCAAAGCCTCCTCCCTCTTTAACAACATCGCCACCATCGTCCACTGCCTCGTCATCGTCTTCATCATCGTCGCCGGACTCATCAACGCCAACCCCCAAAACCTCACTCCCTTCACACCCTTCGGCGTTCGCGGCGTTTTCAAGGCCTCAGCGGTTCTCTTCTTCGCCTTCATCGGCTTCGACGCGGTGGCGACGATGGCTGAGGAAACCAAGAACCCCGCAAGAGACATTCCCATTGGACTTGTCGGCTCCATGACGATAACAACGTTGGTGTACTGCTTGTTGTCTTTAACACTATGTCTTGTGCAGTCCTACAAGGATATTGACGTGGATGCACCGTTTTCCGTTGCGTTTCATGCTGTGGGGTGGGATTGGGCTAAGTACATTGTCGCATTGGGTGCGTTGAAGGGAATGACCACTGTTTTGCTTGTGACTATAGTTGGTGAATCTCGTTACTTAACACACATTTCACGTACTCACATGATGCCACCTTGGTTTGGCCTCGTGGACGACAAGACCGGGACGCCAGTGAATGCTACAATAGCAATGCTAACAGTAACATCAGTGATTGCTTTCTTCACAAACTTTCGTGTTCTCTCTAGCCTCTTGTCCATTTCCACTCTCCTTATTTTCATGCTGGTGGCCGTGGCGCTTCTTGTGAGGCGATATTACTCAAGTGGGGTAACCACAAAGGCGAATCAAGTGAAGCTTATTGTGTGCCTTGTGCTAATATTTGGGTCTTCGTGTGGCGTTTCGGCTTATTGGGCAAACAGTGATGGGATTATTGGGTATGTGATTTGTGTGCCGTTCTGGCTTTTGGGGACTGGAGGGCTTTGGCTTGGTGTTCCAATGGCCAAGACACCCAAACTATGGGGGGTGCCTTTGGTTCCGTGGCTACCTGCTTTGTCTATTTTCATTAACATTTTCCTTCTTGGATCTATCGACGTGGCCTCATATATTAGGTTTGGGGTGTGGACAGCGTTTCTCTTGGTTTACTATGCTTTTGTTGGCTTGCATGCTTCTTATGACGCCGCAAAGGAGTTAAAGAGTGCAAGTAGTAATACTACTACTAATCAGCTTGACCAAGACTTGAACATGCTGGAACAGGGAGTGCAAAGCCAAAATATCAGTACTACATAG
>Glyma08g13655.1 sequence type=predicted peptide gene model=Glyma08g13655 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMEEGGSRGARRRGCTFQKNDFFPEESFKSWGSYGIALRETPWKFKNRVMTRSKDETEVVEMKGRSSNEMKKTLNSWDLIWFGIGAVIGSGIFVITGLEARDAAGPAVVLSYVVSGISALLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFIAAGNILLEYVIGGAAISRSWTSYFATLCNHHPDEFRIIIPNVNPDYGHLDPIAVVVLIAIATLAMVSTKASSLFNNIATIVHCLVIVFIIVAGLINANPQNLTPFTPFGVRGVFKASAVLFFAFIGFDAVATMAEETKNPARDIPIGLVGSMTITTLVYCLLSLTLCLVQSYKDIDVDAPFSVAFHAVGWDWAKYIVALGALKGMTTVLLVTIVGESRYLTHISRTHMMPPWFGLVDDKTGTPVNATIAMLTVTSVIAFFTNFRVLSSLLSISTLLIFMLVAVALLVRRYYSSGVTTKANQVKLIVCLVLIFGSSCGVSAYWANSDGIIGYVICVPFWLLGTGGLWLGVPMAKTPKLWGVPLVPWLPALSIFINIFLLGSIDVASYIRFGVWTAFLLVYYAFVGLHASYDAAKELKSASSNTTTNQLDQDLNMLEQGVQSQNISTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
