Glyma08g13640 - SoyBase

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Report for Sequence Feature Glyma08g13640

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9981599
stop:	9985259
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21120	AT	Annotation by Michelle Graham. TAIR10: amino acid transporter 1 \| chr4:11270318-11273775 FORWARD LENGTH=594	SoyBase	E_val: 0	ISS
GO:0003333	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transmembrane transport	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006820	GO-bp	Annotation by Michelle Graham. GO Biological Process: anion transport	SoyBase	N/A	ISS
GO:0006862	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide transport	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0015696	GO-bp	Annotation by Michelle Graham. GO Biological Process: ammonium transport	SoyBase	N/A	ISS
GO:0015802	GO-bp	Annotation by Michelle Graham. GO Biological Process: basic amino acid transport	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0043269	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of ion transport	SoyBase	N/A	ISS
GO:0051938	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-glutamate import	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005313	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-glutamate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: arginine transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015189	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-lysine transmembrane transporter activity	SoyBase	N/A	ISS
KOG1286	KOG	Amino acid transporters	JGI		ISS
PTHR11785	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PTHR11785:SF53	Panther	TRYPTOPHAN PERMEASE	JGI		ISS
PF00324	PFAM	Amino acid permease	JGI		ISS
UniRef100_G7L9L7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: High affinity cationic amino acid transporter n=1 Tax=Medicago truncatula RepID=G7L9L7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KST7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KST7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g13640 not represented in the dataset	Glyma08g13640 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g13640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g129600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g13640

Limit To All Plant Sequences

>Glyma08g13640.3   sequence type=transcript   gene model=Glyma08g13640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAATTATAAGTCCCCACTCTAAATAAATATCCATTATTCTCCTTACGGTTCTTCTTACTTTGGAATATTCACAACCACTCTTCAGTACGTAAGTGAGAGGAGCAAAACCTAAGAAACAGGATGGGGAGAGACGGTGAGATTGACGGCGGAGTGCGGCGGAGAGGATGCACGTTCAGGCGGAACGACTTCTTCCCGGAGGAGTCGTTCAAGAGTTGGGGAAACTACGCTCGAGCGGTGCTGGAGACGCCGTGGAGGCTGAAGGATCGTGTGGTGACGCGATCGGAGGACCAGACGGAGTTGGTGGAGATGAAGGCTCGTAGCAACCACGAGATGAAGAAAACGCTGAACTGGTGGGACCTCATGTGGTTCGGAATCGGTGCCGTCATTGGCTCCGGCATATTCGTCCTCACTGGCCTCGAGGCAAGGACGGCGGTCGGACCCGCCGTCGTGCTCTCCTACGTCGTTTCCGGCGTCTCCGCCTTGTTCTCGGTGTTCTGCTACACCGAGTTCGCCGTCGAAATTCCCGTCGCAGGCGGATCATTTGCGTACTTAAGAGTCGAACTGGGAGACTTTGTGGCCTACATAGCTGCCGGAAACATCCTCCTCGAGTATGTAATAGGCGGCGCTGCTGTGGCTCGGTCATGGACCTCTTATTTCGCCACCCTTTGTGGCAAACACCCTGATGACTTTCGTATAATAGCCCACAACATGAACCCCAACTATGGCCATCTTGACCCTATAGCCATTGGAGTCCTCATAGCCATAACTATCCTTGCAGTGTACAGCACCAAAGGCTCTTCCATCTTCAACTTCATTGCCACAATCTTTCACTTAATTGTCATTGTCTTCATCATCATCGCAGGCCTCACCAAGGCCAACACCGAAAACTACGCCAACTTTACTCCTTTTGGAGTTCGTGGTGTGTTCAAAGCTTCAGCTGTTCTTTTCTTCGCTTATGTGGGCTTTGATGCTGTCTCAACCATGGCTGAAGAAACAAAGAACCCTGCCAGGGACATTCCCATTGGTCTTGTGGGCTCAATGGTAATTACCACCTTGGCATATTGCTTGCTAGCAGTGACACTATGCCTCATGCAAAACTACACTGACATTGACAAGGATGCTCCCTACTCTGTTGCGTTTAGTGCTGTGGGAATGGATTGGGCTAAGTACATTGTTGCATTTGGGGCTTTGAAGGGAATGACCACTGTGTTATTGGTGAGTGCAGTGGGTCAAGCTCGTTACCTAACCCACATTGCACGTACCCACATGATGCCCCCATGGTTTGCTCATGTTGATGAGAGAACTGGGACACCCATGAATGCCACAATCTCAATGCTTGCAGCTACAGCTGTGATTGCTTTCTTCACTGATCTTGGAATTCTCTCCAACCTTTTGTCAATTTCTACTCTTTTCATCTTTATGCTTGTGGCTTTAGCGCTTCTAGTGCGGCGCTATTATTCAAGTGGGTTAACCACAAAAGAGAACCAAGTGAAGCTCATTGTGTGCCTTATGCTGATTTTGGGGTCTTCATGTGCTATTTCTGCATACTGGGCAAGCAGTGATGGTTGGGTTGGGTATGCAGTTTCTGTGCCGTTGTGGATTTTAGGGACTGGGGGTCTTTGGCTTTTTGTTCCACAGGCAAAGCAACCGAAACTTTGGGGGGTGCCTTTGGTTCCATGGCTACCTTCTTTATCTATTGCTATTAACATATTCCTTCTTGGCTCTATTGATAAAGATTCATTTATCAGGTTTGGGGTCTGGACAGGGTTTCTCTTGGTATACTATGTGCTATTGGGGTTACATGCTTCTTATGACACGGCAAAAGTGTTCGAGAGCAAGAAAAGTTCTGTGGATGTTGACAAGCAGTGGAATAAGGTGGAAGAAGGAGCAAAAGGGGAAGTATCTCTTACAGCAGTTTCAAATGATTGAAGTGTAAAAAGGTTGTTGTAACTAGACAATAGGCTTCTGCAAATAATATCTTACGGTTATAATATTCTAATTAGTTGATGTGTGTATTCGTCGAAAACAAAGTTGTGGGACGTGTGAATACGTTTGTTATTTGTGATGCTAAATTAAGTGTAGAGTGTTCCATACATACGCCTTTTAATTTGTGGAATTGATCATTACTCAACAAATTGAAACATTTTCCTA

Coding sequences of Glyma08g13640

Limit To All Plant Sequences

>Glyma08g13640.2   sequence type=CDS   gene model=Glyma08g13640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGAGACGGTGAGATTGACGGCGGAGTGCGGCGGAGAGGATGCACGTTCAGGCGGAACGACTTCTTCCCGGAGGAGTCGTTCAAGAGTTGGGGAAACTACGCTCGAGCGGTGCTGGAGACGCCGTGGAGGCTGAAGGATCGTGTGGTGACGCGATCGGAGGACCAGACGGAGTTGGTGGAGATGAAGGCTCGTAGCAACCACGAGATGAAGAAAACGCTGAACTGGTGGGACCTCATGTGGTTCGGAATCGGTGCCGTCATTGGCTCCGGCATATTCGTCCTCACTGGCCTCGAGGCAAGGACGGCGGTCGGACCCGCCGTCGTGCTCTCCTACGTCGTTTCCGGCGTCTCCGCCTTGTTCTCGGTGTTCTGCTACACCGAGTTCGCCGTCGAAATTCCCGTCGCAGGCGGATCATTTGCGTACTTAAGAGTCGAACTGGGAGACTTTGTGGCCTACATAGCTGCCGGAAACATCCTCCTCGAGTATGTAATAGGCGGCGCTGCTGTGGCTCGGTCATGGACCTCTTATTTCGCCACCCTTTGTGGCAAACACCCTGATGACTTTCGTATAATAGCCCACAACATGAACCCCAACTATGGCCATCTTGACCCTATAGCCATTGGAGTCCTCATAGCCATAACTATCCTTGCAGTGTACAGCACCAAAGGCTCTTCCATCTTCAACTTCATTGCCACAATCTTTCACTTAATTGTCATTGTCTTCATCATCATCGCAGGCCTCACCAAGGCCAACACCGAAAACTACGCCAACTTTACTCCTTTTGGAGTTCGTGGTGTGTTCAAAGCTTCAGCTGTTCTTTTCTTCGCTTATGTGGGCTTTGATGCTGTCTCAACCATGGCTGAAGAAACAAAGAACCCTGCCAGGGACATTCCCATTGGTCTTGTGGGCTCAATGGTAATTACCACCTTGGCATATTGCTTGCTAGCAGTGACACTATGCCTCATGCAAAACTACACTGACATTGACAAGGATGCTCCCTACTCTGTTGCGTTTAGTGCTGTGGGAATGGATTGGGCTAAGTACATTGTTGCATTTGGGGCTTTGAAGGGAATGACCACTGTGTTATTGGTGAGTGCAGTGGGTCAAGCTCGTTACCTAACCCACATTGCACGTACCCACATGATGCCCCCATGGTTTGCTCATGTTGATGAGAGAACTGGGACACCCATGAATGCCACAATCTCAATGCTTGCAGCTACAGCTGTGATTGCTTTCTTCACTGATCTTGGAATTCTCTCCAACCTTTTGTCAATTTCTACTCTTTTCATCTTTATGCTTGTGGCTTTAGCGCTTCTAGTGCGGCGCTATTATTCAAGTGGGTTAACCACAAAAGAGAACCAAGTGAAGCTCATTGTGTGCCTTATGCTGATTTTGGGGTCTTCATGTGCTATTTCTGCATACTGGGCAAGCAGTGATGGTTGGGTTGGGTATGCAGTTTCTGTGCCGTTGTGGATTTTAGGGACTGGGGGTCTTTGGCTTTTTGTTCCACAGGCAAAGCAACCGAAACTTTGGGGGGTGCCTTTGGTTCCATGGCTACCTTCTTTATCTATTGCTATTAACATATTCCTTCTTGGCTCTATTGATAAAGATTCATTTATCAGGTTTGGGGTCTGGACAGGGTTTCTCTTGGTATACTATGTGCTATTGGGGTTACATGCTTCTTATGACACGGCAAAAGTGTTCGAGAGCAAGAAAAGTTCTGTGGATGTTGACAAGCAGTGGAATAAGGTGGAAGAAGGAGCAAAAGGGGAAGTATCTCTTACAGCAGTTTCAAATGATTGA

>Glyma08g13640.3   sequence type=CDS   gene model=Glyma08g13640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGAGACGGTGAGATTGACGGCGGAGTGCGGCGGAGAGGATGCACGTTCAGGCGGAACGACTTCTTCCCGGAGGAGTCGTTCAAGAGTTGGGGAAACTACGCTCGAGCGGTGCTGGAGACGCCGTGGAGGCTGAAGGATCGTGTGGTGACGCGATCGGAGGACCAGACGGAGTTGGTGGAGATGAAGGCTCGTAGCAACCACGAGATGAAGAAAACGCTGAACTGGTGGGACCTCATGTGGTTCGGAATCGGTGCCGTCATTGGCTCCGGCATATTCGTCCTCACTGGCCTCGAGGCAAGGACGGCGGTCGGACCCGCCGTCGTGCTCTCCTACGTCGTTTCCGGCGTCTCCGCCTTGTTCTCGGTGTTCTGCTACACCGAGTTCGCCGTCGAAATTCCCGTCGCAGGCGGATCATTTGCGTACTTAAGAGTCGAACTGGGAGACTTTGTGGCCTACATAGCTGCCGGAAACATCCTCCTCGAGTATGTAATAGGCGGCGCTGCTGTGGCTCGGTCATGGACCTCTTATTTCGCCACCCTTTGTGGCAAACACCCTGATGACTTTCGTATAATAGCCCACAACATGAACCCCAACTATGGCCATCTTGACCCTATAGCCATTGGAGTCCTCATAGCCATAACTATCCTTGCAGTGTACAGCACCAAAGGCTCTTCCATCTTCAACTTCATTGCCACAATCTTTCACTTAATTGTCATTGTCTTCATCATCATCGCAGGCCTCACCAAGGCCAACACCGAAAACTACGCCAACTTTACTCCTTTTGGAGTTCGTGGTGTGTTCAAAGCTTCAGCTGTTCTTTTCTTCGCTTATGTGGGCTTTGATGCTGTCTCAACCATGGCTGAAGAAACAAAGAACCCTGCCAGGGACATTCCCATTGGTCTTGTGGGCTCAATGGTAATTACCACCTTGGCATATTGCTTGCTAGCAGTGACACTATGCCTCATGCAAAACTACACTGACATTGACAAGGATGCTCCCTACTCTGTTGCGTTTAGTGCTGTGGGAATGGATTGGGCTAAGTACATTGTTGCATTTGGGGCTTTGAAGGGAATGACCACTGTGTTATTGGTGAGTGCAGTGGGTCAAGCTCGTTACCTAACCCACATTGCACGTACCCACATGATGCCCCCATGGTTTGCTCATGTTGATGAGAGAACTGGGACACCCATGAATGCCACAATCTCAATGCTTGCAGCTACAGCTGTGATTGCTTTCTTCACTGATCTTGGAATTCTCTCCAACCTTTTGTCAATTTCTACTCTTTTCATCTTTATGCTTGTGGCTTTAGCGCTTCTAGTGCGGCGCTATTATTCAAGTGGGTTAACCACAAAAGAGAACCAAGTGAAGCTCATTGTGTGCCTTATGCTGATTTTGGGGTCTTCATGTGCTATTTCTGCATACTGGGCAAGCAGTGATGGTTGGGTTGGGTATGCAGTTTCTGTGCCGTTGTGGATTTTAGGGACTGGGGGTCTTTGGCTTTTTGTTCCACAGGCAAAGCAACCGAAACTTTGGGGGGTGCCTTTGGTTCCATGGCTACCTTCTTTATCTATTGCTATTAACATATTCCTTCTTGGCTCTATTGATAAAGATTCATTTATCAGGTTTGGGGTCTGGACAGGGTTTCTCTTGGTATACTATGTGCTATTGGGGTTACATGCTTCTTATGACACGGCAAAAGTGTTCGAGAGCAAGAAAAGTTCTGTGGATGTTGACAAGCAGTGGAATAAGGTGGAAGAAGGAGCAAAAGGGGAAGTATCTCTTACAGCAGTTTCAAATGATTGA

Predicted protein sequences of Glyma08g13640

Limit To All Plant Sequences

>Glyma08g13640.2   sequence type=predicted peptide   gene model=Glyma08g13640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRDGEIDGGVRRRGCTFRRNDFFPEESFKSWGNYARAVLETPWRLKDRVVTRSEDQTELVEMKARSNHEMKKTLNWWDLMWFGIGAVIGSGIFVLTGLEARTAVGPAVVLSYVVSGVSALFSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAYIAAGNILLEYVIGGAAVARSWTSYFATLCGKHPDDFRIIAHNMNPNYGHLDPIAIGVLIAITILAVYSTKGSSIFNFIATIFHLIVIVFIIIAGLTKANTENYANFTPFGVRGVFKASAVLFFAYVGFDAVSTMAEETKNPARDIPIGLVGSMVITTLAYCLLAVTLCLMQNYTDIDKDAPYSVAFSAVGMDWAKYIVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWFAHVDERTGTPMNATISMLAATAVIAFFTDLGILSNLLSISTLFIFMLVALALLVRRYYSSGLTTKENQVKLIVCLMLILGSSCAISAYWASSDGWVGYAVSVPLWILGTGGLWLFVPQAKQPKLWGVPLVPWLPSLSIAINIFLLGSIDKDSFIRFGVWTGFLLVYYVLLGLHASYDTAKVFESKKSSVDVDKQWNKVEEGAKGEVSLTAVSND*

>Glyma08g13640.3   sequence type=predicted peptide   gene model=Glyma08g13640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRDGEIDGGVRRRGCTFRRNDFFPEESFKSWGNYARAVLETPWRLKDRVVTRSEDQTELVEMKARSNHEMKKTLNWWDLMWFGIGAVIGSGIFVLTGLEARTAVGPAVVLSYVVSGVSALFSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAYIAAGNILLEYVIGGAAVARSWTSYFATLCGKHPDDFRIIAHNMNPNYGHLDPIAIGVLIAITILAVYSTKGSSIFNFIATIFHLIVIVFIIIAGLTKANTENYANFTPFGVRGVFKASAVLFFAYVGFDAVSTMAEETKNPARDIPIGLVGSMVITTLAYCLLAVTLCLMQNYTDIDKDAPYSVAFSAVGMDWAKYIVAFGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWFAHVDERTGTPMNATISMLAATAVIAFFTDLGILSNLLSISTLFIFMLVALALLVRRYYSSGLTTKENQVKLIVCLMLILGSSCAISAYWASSDGWVGYAVSVPLWILGTGGLWLFVPQAKQPKLWGVPLVPWLPSLSIAINIFLLGSIDKDSFIRFGVWTGFLLVYYVLLGLHASYDTAKVFESKKSSVDVDKQWNKVEEGAKGEVSLTAVSND*

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