Glyma08g13610 - SoyBase

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Report for Sequence Feature Glyma08g13610

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9949842
stop:	9958165
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30810	AT	Annotation by Michelle Graham. TAIR10: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein \| chr1:10938139-10941505 REVERSE LENGTH=819	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0032453	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone demethylase activity (H3-K4 specific)	SoyBase	N/A	ISS
KOG1246	KOG	DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain	JGI		ISS
PTHR10694	Panther	JUMONJI DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR10694:SF8	Panther	RETINOBLASTOMA BINDING PROTEIN-RELATED	JGI		ISS
PF02373	PFAM	JmjC domain	JGI		ISS
PF02375	PFAM	jmjN domain	JGI		ISS
PF02928	PFAM	C5HC2 zinc finger	JGI		ISS
PF05964	PFAM	F/Y-rich N-terminus	JGI		ISS
PF05965	PFAM	F/Y rich C-terminus	JGI		ISS
UniRef100_G7L9K9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lysine-specific demethylase 5A n=1 Tax=Medicago truncatula RepID=G7L9K9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KST5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KST5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13610

Paralog	Evidence	Comments
Glyma05g30470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g129200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g13610

Limit To All Plant Sequences

>Glyma08g13610.2   sequence type=CDS   gene model=Glyma08g13610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACAGTTGAAATTGGCTGCAGAAACTCACGCCAAAGAGGATAATCCTCTTAGGCATAAGCCAGAAATGGAAAACACACTTGAGTCTCCTGGCAGTTCACGGCATAGAAAGATATCAGCCAGATGGGATCCAGTTGACGCATGCCGGCCTATAGTCGATGAAGCACCTGTGTTTTATCCAACTATTGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATTCGCCCCCAAGCTGAACTTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCTTGCCCTCTTAAGGAGAAAGATTTATGGGAAAATGCAAAATTTCCCACTCGTATTCAGCAAATTGACTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAATTAGGGGAAGGAAACGAAAACATAGAAAACAGTCAAAGATGGGCATGGGTAGGAGAACTGCCAAATCAGGTTCTGAAGCTAATGTTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCAGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAGTGTTTTTAAAGATTGCTACTTTGGATTGAATGATGCCAATGAACATGAAAAAGTTAGTGATAATAGTCACCAGCAGAGATGGAAGCCCTCTGTGGAGGAAATTGAAGGCGAATACTGGCGAATAATAGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGTTTTCCTAAGATATCATCCTTAACTAAGAACGAGTCAGATAGATATACCTTGTCTGGTTGGAATCTGAATAACTTCCCGCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAATTCCTGGAAGCCATGCTCCAGGTCTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAGTTATCTCCTTCAGTTCTTAAATCCGAGGGGGTGCCTGTACATCGCACTGTCCAGCATTCAGGGGAATTTGTTGTTACCTTTCCAAGGGCATACCACTGTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTGAATGTGGCTCCTGTTGACTGGCTTCTGCATGGCCAGAATGCTGCCGAGCTTTACAGTTCGCAGTGCCGTAAGACTTCATTGTCTCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTGCATGCCCTTGCAGATTTAACTCTTCATGGAAAAGAAGATCTAAAATATATAAAATGGAGAAGCGCTTGTGGGAAAGATGGAGTTCTTACCAAAGCAGTTAAGATAAGGATAACTATGGAAAAGGAGAGGCTTGACTGTATTCCAACTCATTTAAAGATGCTGAAGATGGACAGTAAGTTTGATTTGTTTGAGGAAAGAGAATGCTTTGCTTGCTTCTATGACTTGCACCTATCTGCCGTAGGTTGCAAGTGCTCTCCTGACTGTTATTCTTGTCTCAAACATTCAAATTTGTTTTGCTCATGTGAAATGAACAACAGATTTATTCTGTTTCGTTATACTATGGATGAACTAAGTACATTGGTTGAAGCATTAGAAGGAGAATCGCATGCTATTGAAGTGTGGGCAAATAGAAACACTGTAATGGTTTCTGCTGATGCTGAGGATGCTTGCATTTATAAACAAGATGTGGAGAGTGCCATTTGCCAAACCCAGAGTTACAAAGAAGGGAAAAACTCAACTTATTGTGCAGGAACTAATGATAAGTCAAATTCAACTATACCTAGCAGTTCTTACAGCCAAATTTCAGCAGAATTGGTTCACTCAGAGTTTCACCATGAAACTCTTAGTGCACCATCTGACACTAAAGATTGTCATAAAGATAGTTTGAATGAAAAAGATTTGGCCATGGACAATAAAATTATGGTGGGCACAGGAGGTTCTGTGGATTTGAATATTGATGTTATGTCTGGTGAACCTGAAAATTATTTTCTGCATGCTGCTGATTACCATCATAATAAGGGTGTTCCATATGTGGAAAAAGTCTGCTTTGCAGAGACCAGAAAAGAACAAGACAACATGGAACCTGGGGCTGATTGTATTGCTTCCTTGGAGAAAGAATTTTCATCTTGTTCAAGGGATGTTCAAAATTCTTGTACACTTGATGGCTATAAATTGTTTGGGGTGGATTTGCAGATGCATTCTGATTCAGGAGAGCAACTCAACAGTGTATCTAAAATGGGCGTTGTCGAAACCTCCAATACAAGTATATCTTTGACAAACCAAAGCTCCTTAATGAATAACTTTGGTATTTCTGTTGAGCCTGTAAATTTGGGCTCTGTTATGTGCGGAAAACTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTATTTAGCATTCTTGATCCACCAAGAATTTGTAATTATGTTTCTGAAGTCTATGGTGCTGGATTTCTTGGGCCTATTTTCAAGGTTACCATGGAAGAACGTCCAAATGAGGCTTTCACAAACACCTCAGCAGATAAGTGCTGGGAAACAGTTCTTGACAGACTAAATCATGAAATCAAGAGGCGAAGGAGTCGAGGTGAAATAGAACTTCCACCCTTGGAACTTCTGCAAAGCATTAACGGTCACAAAATGTTTGGATTCCTTTCACCATCCATTATTCAGGCCGTTGAAGCTGCAGATCCCAAACATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAGTCTTCAGGCAGTGCCATTGATGACTGTAAGTTCAGTCATGGTTCAAGCAACTCCCTAGGTGATGTCAAGACCAAACTTTTTGGTGCCGGTTTGATAAAGCAGGAGCAAGATAGCATCATAGGAAATTGTGATTCTTTTGAAGAGATGAAATTGGTGCTACAAGGATTCTTGAAAAAGGCAAGTCCCAATGAATTAAGTGCCATGCATAAGTTATTCAGCTCTGATGCACTGTTCACTCAGTGGAGAACAGCATTTGTATCACTGATAGAGGAAATCCAGAAAGCTTGTGCATAA

Predicted protein sequences of Glyma08g13610

Limit To All Plant Sequences

>Glyma08g13610.2   sequence type=predicted peptide   gene model=Glyma08g13610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQLKLAAETHAKEDNPLRHKPEMENTLESPGSSRHRKISARWDPVDACRPIVDEAPVFYPTIEEFEDTLGYIAKIRPQAELYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKIRGRKRKHRKQSKMGMGRRTAKSGSEANVASEPEEKFGFQSGSDFTLKDFQQYASVFKDCYFGLNDANEHEKVSDNSHQQRWKPSVEEIEGEYWRIIEQPTDEVEVYYGADLETGSLGSGFPKISSLTKNESDRYTLSGWNLNNFPRLSGSALCFEGSDISGVVVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGIPGSHAPGLEDAMRKHLPDLFEEQPNLLNELVTQLSPSVLKSEGVPVHRTVQHSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLLHGQNAAELYSSQCRKTSLSHDKLLFGCAQEAVHALADLTLHGKEDLKYIKWRSACGKDGVLTKAVKIRITMEKERLDCIPTHLKMLKMDSKFDLFEERECFACFYDLHLSAVGCKCSPDCYSCLKHSNLFCSCEMNNRFILFRYTMDELSTLVEALEGESHAIEVWANRNTVMVSADAEDACIYKQDVESAICQTQSYKEGKNSTYCAGTNDKSNSTIPSSSYSQISAELVHSEFHHETLSAPSDTKDCHKDSLNEKDLAMDNKIMVGTGGSVDLNIDVMSGEPENYFLHAADYHHNKGVPYVEKVCFAETRKEQDNMEPGADCIASLEKEFSSCSRDVQNSCTLDGYKLFGVDLQMHSDSGEQLNSVSKMGVVETSNTSISLTNQSSLMNNFGISVEPVNLGSVMCGKLWCSKHAIYPKGFKSRVKLFSILDPPRICNYVSEVYGAGFLGPIFKVTMEERPNEAFTNTSADKCWETVLDRLNHEIKRRRSRGEIELPPLELLQSINGHKMFGFLSPSIIQAVEAADPKHQCVEYWNHKEVVSESSGSAIDDCKFSHGSSNSLGDVKTKLFGAGLIKQEQDSIIGNCDSFEEMKLVLQGFLKKASPNELSAMHKLFSSDALFTQWRTAFVSLIEEIQKACA*

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