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Report for Sequence Feature Glyma08g13590

Feature Type:gene_model
Chromosome:Gm08
Start:9940124
stop:9947425
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g13590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G20430AT Annotation by Michelle Graham. TAIR10: Subtilase family protein | chr4:11017656-11021105 REVERSE LENGTH=856 SoyBaseE_val: 0ISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0043086GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0004252GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
PTHR10795Panther SUBTILISIN/KEXIN-RELATED SERINE PROTEASE JGI ISS
PTHR10795:SF17Panther gb def: possible protease [sinorhizobium meliloti] JGI ISS
PF00082PFAM Subtilase family JGI ISS
PF05922PFAM Peptidase inhibitor I9 JGI ISS
UniRef100_G7L9K7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine protease aprX n=1 Tax=Medicago truncatula RepID=G7L9K7_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI00023385B2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023385B2 related cluster n=1 Tax=unknown RepID=UPI00023385B2 SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g13590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13590
ParalogEvidenceComments
Glyma05g30460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g129000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g13590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g13590
>Glyma08g13590.1   sequence type=CDS   gene model=Glyma08g13590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACATGCATTGGCCACAGCATATACATTTAGTGGTACTATTTTTCTTGGGAATGGTTCTAATACCTTCCTCGTGTCAAAGTGATGCAACTACAACTGTGTACATTGTTACTCTGAGACAAGCTCCTGCTTCTCACTATCATCAACATGAGTTGATCACAGTGGGCAACAACTCTAGACATGGTTCATCTGGGAGAAGAAGAACTAGAGTTCACAAACCAAGACATCAGAATGTTACAAAGCCAGATAGGAAACGTGGTTCATACTTTTCCCGAGTTCACGACTCGTTGTTGAATAAAGTGTTTAATGGGGAGAAATATCTGAAGCTCTATAGCTACCATTATTTGATTAATGGATTTGCTGTGCTGGTTACCCAACAACAGGCAGAAAAACTGTCAAGGAGAAGAGAAGTGTCCAATGTGGTTTTGGATTTTTCTGTGAGGACTGCAACCACACACACTCCACAATTTTTGGGTCTGCCACAGGGAGCTTGGTCGCAAGCAGGTGGGTTTGAAACTGCTGGAGAAGGAATCACCATTGGGTTTGTTGACACTGGCATTGATCCTACACATCCTAGTTTTGCTGACGATAAATCTGAACATCCATTCCCCGTTCCTGCTCATTTCTCTGGCATCTGCGAGGTTACTCCGGATTTTCCGTCCCGTTCTTGCAATAGGAAGCTTGTTGGGGCTAGACATTTTGCTGCTTCTGCTATAACCAGAGGAATATTTAACTCATCTCAGGACTATGCTTCTCCCTTTGATGGCGATGGCCACGGCACGCATACAGCTTCTGTTGCAGCTGGAAACCATGGAATTCCAGTGGTCGTTGCTGGGCAATTTTTTGGAAATGCTAGTGGGATGGCTCCTCATTCACACATTGCCATTTACAAGGCACTATACAAGAGATTTGGAGGATTTGCAGCGGATGTTGTTGCAGCTATTGACCAGGCAGCTCAGGATAGGGTTGACATAATATGCTTGTCAATCACTCCTAATAGGCGTCCTTCTGGTATTGCAACTTTCTTCAATCCAATAGATATGGCATTGCTATCAGCTGCGAAAGCTGGTATTTTTGTAGTGCAAGCTGCTGGCAATACTGGACCATCACCTATGAGCATGTCCTCCTTCAGTCCATGGATCTTTACTGTTGGTGCCACCTCTCATGATCGAGTTTATATCAACTCCCTATGTCTTGGAAATAATGTGACTATACCTGGTGTTGGACTTGCACCTGGCACATACGAGAACACATTGTTTAAATTGATTCATGCAAGACATGCTTTGAACAAAAACACAACAGTTACTGATGATATGTATATTGGTGAGTGTCAAGATTCAAGTAAGTTCAGTCAGGATTTGGTCCAGGGCAACCTCCTGATCTGTAGCTATTCAGTCCAATTTGTGCTTGGGCTCTCCACCATTCAGCAGGCCTTAGAAACAGCCATGAATCTTAGTGCAGTTGGTGTTGTTTTCTCCATGGATCCTTTTGTGACTTCTTTTCAGCTTAACCCAGTTCCAATGAAAATGCCTGGCATAATAATTCCATCTGCAAATGATTCCAAGATATTACTGCAATACTACAATTCTTCACTGCAAATAGATGGGGATTCAAATAAAATTGTTAAATTTGGGGCTGTTGCTAGTATTGGTGGTGGATTAGAAGCGAACTGCAATAATGAGGCCCCAATGGTTGTGTATTACTCTGCCAGAGGACCAGATCCAGAGGACAGTCTTCCTCATGAAGCTGACATTATGAAACCCAATTTGGTAGCTCCTGGAAATTTTATATGGGCTGCTTGGAGTTCTGTTGCCACTGATTCTGTTGAATTTCTAGGTGAGAATTTTGCAATGATGTCTGGCACAAGCATGGCTGCACCTCATGTTGCTGGTCTTGCTGCACTAGTTAAGCAAAAGTTTCCCAACTTTAGTCCTGCAGCCATTGGATCTGCACTTTCCACTACAGCTTCTCTGTATGACAACAATAGGAGGCCGATAATGGCTCAGCGATCCTATCCCTCCATAGACCTTAACCTATCTCCAGCAACTCCCTTTGACATGGGAAGTGGTTTTGTGAATGCAACTGCAGCATTAAATCCAGGATTGCTTTTTGATTCTGGTTATGATGATTACATGTCATTCCTATGTGGTATCAACGGTTCAACTCCTACAGTGCTAAACTACACTGGTCAAAATTGCTGGACTTATAATTCAACACTATATGGCCCTGATCTGAACTTGCCCTCAATCACAATAGCAAGGTTGAACCAATCTAGAGTAGTACAAAGAACAATCCAAAACATTGCTGGAAATGAAACTTACAATGTTGGTTGGAGTGCTCCATATGGAACTTCTATGAAAGTGTTTCCTAATCACTTCTCTCTTGCCAGTGGGGAGAGACTAGTCTTGTCTGTGATCTTCAATGCAACCAGCAACAGTTCTGCTGCCAGCTATGGGAGAATTGGGCTGTATGGTAATCAAGGTCATGTTGTCAACATTCCTGTGGCAGTCATTTTTAAAATCTTATAA
Predicted protein sequences of Glyma08g13590
>Glyma08g13590.1   sequence type=predicted peptide   gene model=Glyma08g13590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENMHWPQHIHLVVLFFLGMVLIPSSCQSDATTTVYIVTLRQAPASHYHQHELITVGNNSRHGSSGRRRTRVHKPRHQNVTKPDRKRGSYFSRVHDSLLNKVFNGEKYLKLYSYHYLINGFAVLVTQQQAEKLSRRREVSNVVLDFSVRTATTHTPQFLGLPQGAWSQAGGFETAGEGITIGFVDTGIDPTHPSFADDKSEHPFPVPAHFSGICEVTPDFPSRSCNRKLVGARHFAASAITRGIFNSSQDYASPFDGDGHGTHTASVAAGNHGIPVVVAGQFFGNASGMAPHSHIAIYKALYKRFGGFAADVVAAIDQAAQDRVDIICLSITPNRRPSGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPMSMSSFSPWIFTVGATSHDRVYINSLCLGNNVTIPGVGLAPGTYENTLFKLIHARHALNKNTTVTDDMYIGECQDSSKFSQDLVQGNLLICSYSVQFVLGLSTIQQALETAMNLSAVGVVFSMDPFVTSFQLNPVPMKMPGIIIPSANDSKILLQYYNSSLQIDGDSNKIVKFGAVASIGGGLEANCNNEAPMVVYYSARGPDPEDSLPHEADIMKPNLVAPGNFIWAAWSSVATDSVEFLGENFAMMSGTSMAAPHVAGLAALVKQKFPNFSPAAIGSALSTTASLYDNNRRPIMAQRSYPSIDLNLSPATPFDMGSGFVNATAALNPGLLFDSGYDDYMSFLCGINGSTPTVLNYTGQNCWTYNSTLYGPDLNLPSITIARLNQSRVVQRTIQNIAGNETYNVGWSAPYGTSMKVFPNHFSLASGERLVLSVIFNATSNSSAASYGRIGLYGNQGHVVNIPVAVIFKIL*






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