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Report for Sequence Feature Glyma08g13570

Feature Type:gene_model
Chromosome:Gm08
Start:9928766
stop:9932676
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g13570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20480AT Annotation by Michelle Graham. TAIR10: EF-TU receptor | chr5:6922497-6925679 FORWARD LENGTH=1031 SoyBaseE_val: 0ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0002764GO-bp Annotation by Michelle Graham. GO Biological Process: immune response-regulating signaling pathway SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0007169GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway SoyBaseN/AISS
GO:0009581GO-bp Annotation by Michelle Graham. GO Biological Process: detection of external stimulus SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009626GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010204GO-bp Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010359GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0016045GO-bp Annotation by Michelle Graham. GO Biological Process: detection of bacterium SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0050776GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of immune response SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0019199GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein kinase activity SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF474Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_G7L9K4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kinase-like protein n=1 Tax=Medicago truncatula RepID=G7L9K4_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KST1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KST1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g13570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g13570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g128800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g13570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g13570
>Glyma08g13570.1   sequence type=CDS   gene model=Glyma08g13570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTGTTCTCTCATTTTCTTGTTCATTTTGCCTTATTACTCATTTTCCTCCCTCTTGAGCTACACAACCTTTTGATTGGTGTATCATCAGCCACTTTAAGCATCACCACAGACAGAGAAGCCTTGATCTCATTTAAGTCTCAACTGAGTAATGAGAATCTTAGCCCTTTATCTTCTTGGAACCATAATTCATCTCCTTGCAATTGGACTGGTGTTCTATGTGACAGGCTTGGCCAAAGAGTAACTGGCTTGGATCTTTCAGGCTATGGACTCTCAGGTCACTTAAGCCCTTATGTTGGTAACCTTTCCTCTCTTCAGTCTCTCCAATTGCAGAATAACCAATTCAGAGGAGTGATTCCTGACCAAATTGGCAACCTATTAAGTCTTAAAGTTCTAAATATGAGCTATAACATGTTAGAAGGAAAGCTTCCTTCAAACATCACCCACTTGAATGAGCTTCAGGTTCTTGATTTATCCTCAAACAAGATTGTCAGCAAGATTCCTGAAGACATCAGCAGCTTGCAAAAGCTTCAGGCTTTGAAACTAGGAAGGAACAGCCTCTTTGGTGCAATACCAGCATCTCTAGGAAACATTTCTTCCCTAAAAAATATCAGCTTTGGCACCAACTTTCTCACTGGCTGGATTCCCAGTGAATTGGGCAGGCTCCATGATTTGATTGAGCTTGATCTCAGTCTCAACCATCTCAATGGGACTGTTCCACCTGCTATATACAACTTATCTTCCCTTGTCAACTTTGCCTTAGCTTCAAACTCTTTCTGGGGTGAGATTCCTCAGGATGTTGGTCACAAACTTCCAAAACTCATAGTTTTCTGTATCTGCTTCAATTATTTCACAGGTAGAATTCCAGGGTCTTTGCATAACCTCACCAACATTCAGGTCATTCGTATGGCTTCCAACCATTTGGAAGGATCAGTGCCACCTGGTTTGGGAAATCTCCCATTTCTTTGCACGTATAACATTCGGTATAACTGGATAGTGAGTTCAGGTGTTAGAGGTTTAGACTTCATTACTTCTTTGACAAACAGCACTCACCTGAACTTTCTAGCAATTGATGGAAATATGCTGGAAGGTGTGATTCCAGAAACCATTGGCAATCTCTCCAAGGATCTCTCAACACTATACATGGGACAGAATCGTTTCAATGGAAGCATACCCTCCTCCATTGGTCGTCTCAGTGGCTTGAAGTTGTTAAACTTAAGCTACAATTCAATCTCAGGAGAAATCCCACAAGAGTTAGGCCAGTTAGAGGAACTACAAGAGCTATCTCTGGCTGGGAATGAGATATCAGGAGGTATTCCAAGCATACTTGGTAATCTCCTGAAGTTAAACCTGGTTGATTTGTCAAGAAATAAACTTGTGGGGAGAATACCTACCAGTTTTGGGAATTTGCAAAACCTGCTTTACATGGACTTATCCAGCAACCAACTCAATGGAAGCATACCTATGGAAATCCTCAATCTCCCAACTTTGAGCAATGTTCTGAACTTGTCGATGAACTTTTTGAGTGGACCAATACCTGAAGTTGGCAGATTGAGTAGTGTGGCCTCCATTGACTTTTCTAACAACCAATTGTATGGTGGCATCCCCAGCTCATTCAGCAATTGTCTCAGCTTGGAAAAACTGTTTTTGCCTCGGAATCAGCTTTCAGGTCCCATTCCAAAGGCTCTTGGAGATGTGAGAGGCTTGGAAACTTTGGATCTGTCCTCCAACCAACTCTCTGGAACCATTCCTATTGAACTTCAAAATTTACACGGGCTTAAGCTCTTAAACCTCTCGTACAATGATATAGAAGGAGCCATTCCTGGTGCTGGAGTTTTCCAAAATCTCTCTGCTGTCCATTTAGAAGGCAATAGAAAACTCTGCTTGCATTTCTCATGCATGCCTCATGGCCAAGGAAGAAAAAATATAAGACTTTACATCATGATAGCCATCACGGTAACATTGATACTATGTCTCACTATTGGCTTATTACTATATATCGAGAACAAAAAGGTGAAGGTAGCACCAGTTGCAGAATTTGAACAGCTTAAACCTCATGCACCAATGATCTCTTATGATGAGCTTCTTTTGGCAACTGAGGAGTTCAGCCAGGAAAACCTATTAGGAGTTGGAAGCTTTGGCTCAGTTTATAAAGGCCATCTAAGTCATGGAGCTACCGTTGCAGTGAAAGTTCTTGACACCCTAAGAACTGGCTCTTTGAAGAGTTTCTTTGCCGAATGTGAGGCTATGAAGAACTCAAGGCATCGAAATCTGGTTAAGCTGATCACATCATGCTCTAGTATTGACTTTAAAAACAATGATTTTCTGGCTCTGGTGTACGAGTACCTGTGCAATGGTAGCTTGGATGATTGGATCAAGGGGAGGAGAAAGCATGAAAAGGGAAATGGGTTAAACCTTATGGAAAGACTGAACATTGCTCTAGATGTTGCTTGTGCATTGGACTACCTCCACAATGATAGTGAAATTCCAGTAGTGCACTGTGATTTGAAGCCTAGCAACATTCTATTGGATGAAGATATGACAGCAAAGGTTGGAGACTTTGGATTGGCTAGGTTGCTGATTCAAAGATCAACTAGTCAAGTTTCCATAAGCTCCACTCGTGTCCTTAGGGGTTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCATCTGCAGCTGGTGATGTATATAGTTTTGGTATAGTGTTACTAGAAATGTTCTCTGGTAAAAGTCCAACAGATGAGTGTTTCACAGGAGACCTAAGCATAAGAAGATGGGTGCAATCATCATGTAAAGACAAGATAGTGCAAGTGATTGACCCTCAGTTACTATCCCTCATTTTTAATGATGACCCTTCTGAGGGAGAGGGGCCAATTCTGCAACTTTATTGTGTGGATTCAATTGTAGGAGTTGGCATAGCTTGCACTACAAACAACCCAGATGAACGCATTGGCATCAGAGAAGCTGTTCGTCGACTAAAAGCTGCTAGGGACTCTCTTTTGAATTAG
Predicted protein sequences of Glyma08g13570
>Glyma08g13570.1   sequence type=predicted peptide   gene model=Glyma08g13570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALFSHFLVHFALLLIFLPLELHNLLIGVSSATLSITTDREALISFKSQLSNENLSPLSSWNHNSSPCNWTGVLCDRLGQRVTGLDLSGYGLSGHLSPYVGNLSSLQSLQLQNNQFRGVIPDQIGNLLSLKVLNMSYNMLEGKLPSNITHLNELQVLDLSSNKIVSKIPEDISSLQKLQALKLGRNSLFGAIPASLGNISSLKNISFGTNFLTGWIPSELGRLHDLIELDLSLNHLNGTVPPAIYNLSSLVNFALASNSFWGEIPQDVGHKLPKLIVFCICFNYFTGRIPGSLHNLTNIQVIRMASNHLEGSVPPGLGNLPFLCTYNIRYNWIVSSGVRGLDFITSLTNSTHLNFLAIDGNMLEGVIPETIGNLSKDLSTLYMGQNRFNGSIPSSIGRLSGLKLLNLSYNSISGEIPQELGQLEELQELSLAGNEISGGIPSILGNLLKLNLVDLSRNKLVGRIPTSFGNLQNLLYMDLSSNQLNGSIPMEILNLPTLSNVLNLSMNFLSGPIPEVGRLSSVASIDFSNNQLYGGIPSSFSNCLSLEKLFLPRNQLSGPIPKALGDVRGLETLDLSSNQLSGTIPIELQNLHGLKLLNLSYNDIEGAIPGAGVFQNLSAVHLEGNRKLCLHFSCMPHGQGRKNIRLYIMIAITVTLILCLTIGLLLYIENKKVKVAPVAEFEQLKPHAPMISYDELLLATEEFSQENLLGVGSFGSVYKGHLSHGATVAVKVLDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSIDFKNNDFLALVYEYLCNGSLDDWIKGRRKHEKGNGLNLMERLNIALDVACALDYLHNDSEIPVVHCDLKPSNILLDEDMTAKVGDFGLARLLIQRSTSQVSISSTRVLRGSIGYIPPEYGWGEKPSAAGDVYSFGIVLLEMFSGKSPTDECFTGDLSIRRWVQSSCKDKIVQVIDPQLLSLIFNDDPSEGEGPILQLYCVDSIVGVGIACTTNNPDERIGIREAVRRLKAARDSLLN*






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