Glyma08g13540 - SoyBase

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Report for Sequence Feature Glyma08g13540

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9909298
stop:	9915608
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30620	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr1:10855496-10857970 FORWARD LENGTH=419	SoyBase	E_val: 0	ISS
GO:0006012	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactose metabolic process	SoyBase	N/A	ISS
GO:0009225	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar metabolic process	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0019567	GO-bp	Annotation by Michelle Graham. GO Biological Process: arabinose biosynthetic process	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0052542	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003978	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucose 4-epimerase activity	SoyBase	N/A	ISS
GO:0050373	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-arabinose 4-epimerase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1371	KOG	UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF39	Panther	CDP-3, 6-DIDEOXY-D-GLYCERO-L-GLYCERO-4-HEXULOSE-4-REDUCTASE	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_G7L9K1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-D-xylose 4-epimerase n=2 Tax=Medicago truncatula RepID=G7L9K1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KSS7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSS7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13540

Paralog	Evidence	Comments
Glyma05g30410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g128500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g13540

Limit To All Plant Sequences

>Glyma08g13540.3   sequence type=transcript   gene model=Glyma08g13540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATGATGCTGTTCCTTTGATTCAGGGTTGGGTCTCTCTCTCCCTCTAACGTTTCGACAACATGGACTGCACGCACAGAACTCTCCGCCACTCTCTCTCTCTCTCTCTCTCTCTCCATCAACATTCAAGACCACCCTTCAATTTTGGACCTTTCCATATTCGTGTGCAACTCTCTTCCCATTTTCTACATATTTCCATTTTCCACTATTTCTCTCCACCGTCTCATCTGGTACACATTTTCCCCTTCTTCTTTTTAGTTCTTCATTTTTCTTTCCTTTTCTATTAAGATCTTGTGGGTAACAGTGAAAGATCGTTTTTTTTTCCGTCGCTTTTTCATCGAGGATGTCTCTCAAGATCTGTCTGGGGAGTGGAGCTTGATTTGATTATTGATATTAAGGAATAAAATCTCATTCAACACACTAAACAATAGGGATTTTGCAAATGCTAAATTTTGGAAGGTCCAGAAGTCAGTCAAGGGCAGCCAGAGCTACAACAATGGGAGGCATGGATTATGCAGATTCAAAAAAGAAGGGCAATTTTGTTGGGAAAGTATTTCTTGCTGCTGCATTAACAACACTGTGCATAATCATGATCAAGCGATCTCCATCTTTGAATTCCCCTAGCCCGTTTTCTGTTCGTGAACCTGGGGTCACTCATGTTTTAGTAACAGGGGGTGCAGGATATATTGGTTCACATGCTGCTCTACGACTTCTGAAGGAGAACTATCGTGTCACCATAGTAGACAATCTGTCACGTGGAAATTTGGGGGCCGTCAAGGTTCTTCAAGACTTATTTCCAGAACCTGGAAGGCTTCAATTTATTTATGCTGACTTGGGAGATCCACAATCTGTTAATAAAATATTTTTGGAGAACAAATTTGATGCCGTGATGCACTTTGCTGCTGTTGCATATGTGGGAGAAAGCACTGCTGATCCTCTTAAGTATTATCACAATATTACATCAAACACCGTGTTGGTATTGGAGTCTATGGCTAAACATGATGTGAAGACATTGATATATTCCAGTACATGTGCAACATATGGGGAACCTGAGAAGATGCCCATTACAGAAGAAACAAAGCAGGTCCCAATAAATCCATACGGGAAAGCCAAGAAGATGGCAGAAGAGATCATTCTTGATTTATCTAAAAACTCAGACATGGCAGTAATGATTCTGAGATACTTCAACGTGATTGGATCAGATCCTGAGGGAAGATTGGGTGAGGCTCCTAGGCCTGAACTGCGAGAGCAAGGTCGAATATCAGGTGCCTGCTTTGATGCTGCTCGTGGTATTGTACCTGGTTTGAAGGTAAGAGGAACAGACTATAAGACGGCTGATGGAACTTGTGTACGAGATTATATTGATGTAACTGACCTGGTTGATGCTCATGTAAAAGCTCTGGAAAAGGCACAACCTAGTAATGTTGGGATCTACAATGTTGGCACTGGAAAGGGTAGTTCAGTGAAGGAGTTTGTGGAAGCTTGTAAAAAGGCCACAGGGGTGGACATTAAAGTGGACTACCTTCCGCGTCGTCCAGGCGATTATGCTGAGGTGTACAGTGACCCATCAAAGATCAAACGTGAATTGAATTGGGTTGCTAAGCACACTGATCTTCAACAGAGTTTGAAGGTTGCATGGAGATGGCAGAAATCTCATCGTGATGGTTACGGGGTTTCAAATGCATTATTTTGAATTACATAGAATTCTAACATAACAGCAGAAGACTAGAAGAAACCCCGGCAGCATCCATTTCAGCTGCACTTCTATGATATCTTAGAATAGGGGTTGATATTATTTTTTTCTTCTTTTACTCCATTGGGGAATTTGTTCTTAGGGAGCATGTTGTCCATTCGATACATGTATTGACCGCATAATATGATTCAATAATATAATGCAGAGGCTCTATTATACTTTTTCTCTACGATGATATTTATATCACATTACT

Coding sequences of Glyma08g13540

Limit To All Plant Sequences

>Glyma08g13540.2   sequence type=CDS   gene model=Glyma08g13540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAAATTTTGGAAGGTCCAGAAGTCAGTCAAGGGCAGCCAGAGCTACAACAATGGGAGGCATGGATTATGCAGATTCAAAAAAGAAGGGCAATTTTGTTGGGAAAGTATTTCTTGCTGCTGCATTAACAACACTGTGCATAATCATGATCAAGCGATCTCCATCTTTGAATTCCCCTAGCCCGTTTTCTGTTCGTGAACCTGGGGTCACTCATGTTTTAGTAACAGGGGGTGCAGGATATATTGGTTCACATGCTGCTCTACGACTTCTGAAGGAGAACTATCGTGTCACCATAGTAGACAATCTGTCACGTGGAAATTTGGGGGCCGTCAAGGTTCTTCAAGACTTATTTCCAGAACCTGGAAGGCTTCAATTTATTTATGCTGACTTGGGAGATCCACAATCTGTTAATAAAATATTTTTGGAGAACAAATTTGATGCCGTGATGCACTTTGCTGCTGTTGCATATGTGGGAGAAAGCACTGCTGATCCTCTTAAGTATTATCACAATATTACATCAAACACCGTGTTGGTATTGGAGTCTATGGCTAAACATGATGTGAAGACATTGATATATTCCAGTACATGTGCAACATATGGGGAACCTGAGAAGATGCCCATTACAGAAGAAACAAAGCAGGTCCCAATAAATCCATACGGGAAAGCCAAGAAGATGGCAGAAGAGATCATTCTTGATTTATCTAAAAACTCAGACATGGCAGTAATGATTCTGAGATACTTCAACGTGATTGGATCAGATCCTGAGGGAAGATTGGGTGAGGCTCCTAGGCCTGAACTGCGAGAGCAAGGTCGAATATCAGGTGCCTGCTTTGATGCTGCTCGTGGTATTGTACCTGGTTTGAAGGTAAGAGGAACAGACTATAAGACGGCTGATGGAACTTGTGTACGAGATTATATTGATGTAACTGACCTGGTTGATGCTCATGTAAAAGCTCTGGAAAAGGCACAACCTAGTAATGTTGGGATCTACAATGTTGGCACTGGAAAGGGTAGTTCAGTGAAGGAGTTTGTGGAAGCTTGTAAAAAGGCCACAGGGGTGGACATTAAAGTGGACTACCTTCCGCGTCGTCCAGGCGATTATGCTGAGGTGTACAGTGACCCATCAAAGATCAAACGTGAATTGAATTGGGTTGCTAAGCACACTGATCTTCAACAGAGTTTGAAGGTTGCATGGAGATGGCAGAAATCTCATCGTGATGGTTACGGGGTTTCAAATGCATTATTTTGA

>Glyma08g13540.3   sequence type=CDS   gene model=Glyma08g13540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAAATTTTGGAAGGTCCAGAAGTCAGTCAAGGGCAGCCAGAGCTACAACAATGGGAGGCATGGATTATGCAGATTCAAAAAAGAAGGGCAATTTTGTTGGGAAAGTATTTCTTGCTGCTGCATTAACAACACTGTGCATAATCATGATCAAGCGATCTCCATCTTTGAATTCCCCTAGCCCGTTTTCTGTTCGTGAACCTGGGGTCACTCATGTTTTAGTAACAGGGGGTGCAGGATATATTGGTTCACATGCTGCTCTACGACTTCTGAAGGAGAACTATCGTGTCACCATAGTAGACAATCTGTCACGTGGAAATTTGGGGGCCGTCAAGGTTCTTCAAGACTTATTTCCAGAACCTGGAAGGCTTCAATTTATTTATGCTGACTTGGGAGATCCACAATCTGTTAATAAAATATTTTTGGAGAACAAATTTGATGCCGTGATGCACTTTGCTGCTGTTGCATATGTGGGAGAAAGCACTGCTGATCCTCTTAAGTATTATCACAATATTACATCAAACACCGTGTTGGTATTGGAGTCTATGGCTAAACATGATGTGAAGACATTGATATATTCCAGTACATGTGCAACATATGGGGAACCTGAGAAGATGCCCATTACAGAAGAAACAAAGCAGGTCCCAATAAATCCATACGGGAAAGCCAAGAAGATGGCAGAAGAGATCATTCTTGATTTATCTAAAAACTCAGACATGGCAGTAATGATTCTGAGATACTTCAACGTGATTGGATCAGATCCTGAGGGAAGATTGGGTGAGGCTCCTAGGCCTGAACTGCGAGAGCAAGGTCGAATATCAGGTGCCTGCTTTGATGCTGCTCGTGGTATTGTACCTGGTTTGAAGGTAAGAGGAACAGACTATAAGACGGCTGATGGAACTTGTGTACGAGATTATATTGATGTAACTGACCTGGTTGATGCTCATGTAAAAGCTCTGGAAAAGGCACAACCTAGTAATGTTGGGATCTACAATGTTGGCACTGGAAAGGGTAGTTCAGTGAAGGAGTTTGTGGAAGCTTGTAAAAAGGCCACAGGGGTGGACATTAAAGTGGACTACCTTCCGCGTCGTCCAGGCGATTATGCTGAGGTGTACAGTGACCCATCAAAGATCAAACGTGAATTGAATTGGGTTGCTAAGCACACTGATCTTCAACAGAGTTTGAAGGTTGCATGGAGATGGCAGAAATCTCATCGTGATGGTTACGGGGTTTCAAATGCATTATTTTGA

Predicted protein sequences of Glyma08g13540

Limit To All Plant Sequences

>Glyma08g13540.2   sequence type=predicted peptide   gene model=Glyma08g13540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNFGRSRSQSRAARATTMGGMDYADSKKKGNFVGKVFLAAALTTLCIIMIKRSPSLNSPSPFSVREPGVTHVLVTGGAGYIGSHAALRLLKENYRVTIVDNLSRGNLGAVKVLQDLFPEPGRLQFIYADLGDPQSVNKIFLENKFDAVMHFAAVAYVGESTADPLKYYHNITSNTVLVLESMAKHDVKTLIYSSTCATYGEPEKMPITEETKQVPINPYGKAKKMAEEIILDLSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREQGRISGACFDAARGIVPGLKVRGTDYKTADGTCVRDYIDVTDLVDAHVKALEKAQPSNVGIYNVGTGKGSSVKEFVEACKKATGVDIKVDYLPRRPGDYAEVYSDPSKIKRELNWVAKHTDLQQSLKVAWRWQKSHRDGYGVSNALF*

>Glyma08g13540.3   sequence type=predicted peptide   gene model=Glyma08g13540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNFGRSRSQSRAARATTMGGMDYADSKKKGNFVGKVFLAAALTTLCIIMIKRSPSLNSPSPFSVREPGVTHVLVTGGAGYIGSHAALRLLKENYRVTIVDNLSRGNLGAVKVLQDLFPEPGRLQFIYADLGDPQSVNKIFLENKFDAVMHFAAVAYVGESTADPLKYYHNITSNTVLVLESMAKHDVKTLIYSSTCATYGEPEKMPITEETKQVPINPYGKAKKMAEEIILDLSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREQGRISGACFDAARGIVPGLKVRGTDYKTADGTCVRDYIDVTDLVDAHVKALEKAQPSNVGIYNVGTGKGSSVKEFVEACKKATGVDIKVDYLPRRPGDYAEVYSDPSKIKRELNWVAKHTDLQQSLKVAWRWQKSHRDGYGVSNALF*

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