Glyma08g13520 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g13520

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9898910
stop:	9902890
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11400	AT	Annotation by Michelle Graham. TAIR10: partner of Y14-MAGO \| chr1:3838777-3839978 FORWARD LENGTH=204	SoyBase	E_val: 3.00E-72	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0010628	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of gene expression	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005654	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG4325	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR22959	Panther	PYM PROTEIN	JGI		ISS
PF09282	PFAM	Mago binding	JGI		ISS
UniRef100_D7KME2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Partner of Y14-mago n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KME2_ARALL	SoyBase	E_val: 6.00E-72	ISS
UniRef100_I1KSS4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSS4_SOYBN	SoyBase	E_val: 1.00E-132	ISS

Expression Patterns of Glyma08g13520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13520

Paralog	Evidence	Comments
Glyma05g30400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g128300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g13520

Limit To All Plant Sequences

>Glyma08g13520.2   sequence type=transcript   gene model=Glyma08g13520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAGTTGGGTCTTTAACTGCTAAAGTGAGTGACACAGAGACACAGCATAGCATAAGAAAGATGAGCGACGACGAAAGGAAGAAGCAAATAGCGGAGCTGAGCAAAAGCCTCAAAGAAGGAGAGAGGCTCGTGGGCCCAACGAGACGGCCCGACGGAACCCTCCGCAAGCCCATTCGAATCCGCGCCGGCTACACCCCTCAAGACGAAGTCGCCATTTACCAACCCAAAGGAGCACTCGAGATGGGCTCCGCTGGGCCTCCCGGGTACGAACCAGACGCTGATTCCAAGCCCAAGACCAAGTCCGTTAAGAGGAACGAGAGAAAGAAGGAAAAGCGCATTCAGGCTGCGCTTGAAAAGGAAAAGAATGTGAGTGAAGTTGAAGATAGTGGAAAGCAGGAATCTCTGGAGGCATTGACCTCACAGGTAAATCGGCTCGCTGTGCAAGATTCGCCCCAAGCTCAAGATATTGATAAAAGAATTCGTGCTCTCAAAAAGAAGATTCGACTTACAGAAGCATTGGAGCAGAAAAGTGCAGAGCAAGATCTGAAGCCAGAGCAGTTGGAAAAGCTAGCAAAATTAGAAGATTGGCGTAGGGAGTTAAAGTTATTGGAGGATGAGAAGGGTGAAACAACCGTATCATGAACAAAGTATTCGAAATAGCATGACAAAGTTGTGTAGTTTTATCCATGTCTTCCTGAAAGATATATTCCATGGAAACAGGTTTACCAAAGATTTTCCTGTAATCACCATCTTTTGTGTGCAACTTGTCAGATAAAGTCAGGCTGAATTTGGATGAACTTTTCAACAAGTTATAGGAAAGGAAAATTTAGAAGTAAAACAATTCTCTCATCTATTTTCTCCAAATGTTGAAAAATATGTCTTGATTTTAACTTGTAAAAGGATTGATTTATTTAACCTGTCTGTGTACTAGATTATTTAAACTAAACTTTAAACTTCATTTGTTTTCAAAAACAAGTTGCAATCTGTATTTAATATTTACTTGAAAAATTGCACGAGCTCTGAGTCGTTTCCATTAAACATAGGAAGCTTGTAGAAATTTAAAAAACTTAAGCGTTTTGGTAAATAAAATGGAGGCTGCTATTGTAAATTTC

Coding sequences of Glyma08g13520

Limit To All Plant Sequences

>Glyma08g13520.1   sequence type=CDS   gene model=Glyma08g13520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGACGACGAAAGGAAGAAGCAAATAGCGGAGCTGAGCAAAAGCCTCAAAGAAGGAGAGAGGCTCGTGGGCCCAACGAGACGGCCCGACGGAACCCTCCGCAAGCCCATTCGAATCCGCGCCGGCTACACCCCTCAAGACGAAGTCGCCATTTACCAACCCAAAGGAGCACTCTTGAAAAAGGAGATGGGCTCCGCTGGGCCTCCCGGGTACGAACCAGACGCTGATTCCAAGCCCAAGACCAAGTCCGTTAAGAGGAACGAGAGAAAGAAGGAAAAGCGCATTCAGGCTGCGCTTGAAAAGGAAAAGAATGTGAGTGAAGTTGAAGATAGTGGAAAGCAGGAATCTCTGGAGGCATTGACCTCACAGGTAAATCGGCTCGCTGTGCAAGATTCGCCCCAAGCTCAAGATATTGATAAAAGAATTCGTGCTCTCAAAAAGAAGATTCGACTTACAGAAGCATTGGAGCAGAAAAGTGCAGAGCAAGATCTGAAGCCAGAGCAGTTGGAAAAGCTAGCAAAATTAGAAGATTGGCGTAGGGAGTTAAAGTTATTGGAGGATGAGAAGGGTGAAACAACCGTATCATGA

>Glyma08g13520.2   sequence type=CDS   gene model=Glyma08g13520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGACGACGAAAGGAAGAAGCAAATAGCGGAGCTGAGCAAAAGCCTCAAAGAAGGAGAGAGGCTCGTGGGCCCAACGAGACGGCCCGACGGAACCCTCCGCAAGCCCATTCGAATCCGCGCCGGCTACACCCCTCAAGACGAAGTCGCCATTTACCAACCCAAAGGAGCACTCGAGATGGGCTCCGCTGGGCCTCCCGGGTACGAACCAGACGCTGATTCCAAGCCCAAGACCAAGTCCGTTAAGAGGAACGAGAGAAAGAAGGAAAAGCGCATTCAGGCTGCGCTTGAAAAGGAAAAGAATGTGAGTGAAGTTGAAGATAGTGGAAAGCAGGAATCTCTGGAGGCATTGACCTCACAGGTAAATCGGCTCGCTGTGCAAGATTCGCCCCAAGCTCAAGATATTGATAAAAGAATTCGTGCTCTCAAAAAGAAGATTCGACTTACAGAAGCATTGGAGCAGAAAAGTGCAGAGCAAGATCTGAAGCCAGAGCAGTTGGAAAAGCTAGCAAAATTAGAAGATTGGCGTAGGGAGTTAAAGTTATTGGAGGATGAGAAGGGTGAAACAACCGTATCATGA

Predicted protein sequences of Glyma08g13520

Limit To All Plant Sequences

>Glyma08g13520.1   sequence type=predicted peptide   gene model=Glyma08g13520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDDERKKQIAELSKSLKEGERLVGPTRRPDGTLRKPIRIRAGYTPQDEVAIYQPKGALLKKEMGSAGPPGYEPDADSKPKTKSVKRNERKKEKRIQAALEKEKNVSEVEDSGKQESLEALTSQVNRLAVQDSPQAQDIDKRIRALKKKIRLTEALEQKSAEQDLKPEQLEKLAKLEDWRRELKLLEDEKGETTVS*

>Glyma08g13520.2   sequence type=predicted peptide   gene model=Glyma08g13520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDDERKKQIAELSKSLKEGERLVGPTRRPDGTLRKPIRIRAGYTPQDEVAIYQPKGALEMGSAGPPGYEPDADSKPKTKSVKRNERKKEKRIQAALEKEKNVSEVEDSGKQESLEALTSQVNRLAVQDSPQAQDIDKRIRALKKKIRLTEALEQKSAEQDLKPEQLEKLAKLEDWRRELKLLEDEKGETTVS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain