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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71220 | AT | Annotation by Michelle Graham. TAIR10: UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups | chr1:26841664-26851730 FORWARD LENGTH=1614 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0009626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0010204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent | SoyBase | N/A | ISS |
| GO:0016051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0046283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003980 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| KOG1879 | KOG | UDP-glucose:glycoprotein glucosyltransferase | JGI | ISS | |
| PTHR11226 | Panther | UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE | JGI | ISS | |
| PF06427 | PFAM | UDP-glucose:Glycoprotein Glucosyltransferase | JGI | ISS | |
| UniRef100_G7IPG7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose:glycoprotein glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7IPG7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023385AE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023385AE related cluster n=1 Tax=unknown RepID=UPI00023385AE | SoyBase | E_val: 0 | ISS |
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Glyma08g13400 not represented in the dataset |
Glyma08g13400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g30230 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g127200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g13400.1 sequence type=CDS gene model=Glyma08g13400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTGCCTTTGGAGATCTCGATGTCGAGTTCTCATTGTGTTTATGTTGTTGAATATTGGTTCAGCCTTTGCTGACACTCCTCAGAGACCCAAGAATGTTCAAACTTCACTCCGTGCTAAGTGGTCTGGAACCCCCCTGCTTTTGGAAGCTGGTGAATTATTATCTAACGAGAAAAAGGACCTTTTCTGGGACTTCATTGAGATTTGGCTAAATACTGAGAAGGATGCTGTTAGCTCTCGAACAGCTAAAGATTGCCTGAAGAAAATTTTGGAATGTGGGCGCCCTCTTCTAAGGGAACCATTAAAATCATTATTTGAATTGTCTCTTATGCTGAGATCAGCATCCCCTAGGCTGGTGCTCTACCAGCAATTAGCGGAGGAATCTCTCACATCTTTTCCCCTAGGTGATGAAAATTATTCAGATAATGAGACTGAGGAAAAGTTGCAAACAGAAAAGAAGATTGAAAGGAGAAAAGTAGATCCCCTGCATGGTGTAATCCTGAAAAGCCATGGAGGAAAATGTTGTTGGGTAGATACTGGTGAACACTTGTTTCTGGATTTTTATGAATTACTGGCGTGGCTTCAGGACTCTGCTGAGCAGGTAGGTGATTCGTTTCAGAGACCTGAAATATTTGATTTTGATCACGTCTATTATGAGTTAAGCGTTGGAAGTCCAGTTGCTATCCTTTACGGTGCAATTGGAACCAATTGTTTTAAGGAGTTTCATGTTGCTTTAGTTAAAGCTGCCAAAGAGGGGAAAGTTAAGTATGTTGTACGGCCAGTGTTGCCTGCTGGATGTGAATTAAATATCAATCATTGTGGTTCTGTTGGTGCTGGTGAATCAGTGAACTTGGGTGGTTATGGTGTGGAACTTGCACTGAAGAATATGGAATATAAGGCCATGGATGACAGTACGGTAAAAAAAGGTGTGACTTTGGAGGATCCTCGAACTGAAGATCTTAGCCAGGAAGTCAGAGGATTCATATTCTCTAAAATTCTGGTGCGTAAACCCGAGTTAGCATCTGAGGTCATGGCTTTTCGGGATTATCTATTGTCATCAACTGTATCAGACACACTTGATGTTTGGGAATTAAAGGATCTAGGACATCAAACTGTACAGAGAATTGTCCGTGCTTCTGATCCTCTGCAGTCAATGCAGGAAATAAATCAAAATTTCCCTAGCGTAGTTTCTTCCTTGTCTCGCATGAAGCTTGAGGATTCTGTTCGAGATGAAATAATGGCAAACCAGCGGATGGTCCCACCTGGAAAGTCTTTAATGGCTCTAAATGGTGCTTTAGTCAATGTTGAAGATGTTGACCTCTATCTGTTGTTTGACTTGATCCATCAGGATCTCTTGTTGGCTGATCAATTCTCAAAATTGAAGATTCCTCAAGGCACTTTGAAGAAATTGCTCTCAACTTCACCTCCTTCAGAGTCCAGTATACCTCGAGTTGATTTTCGTTCTAGCCATGTTCATTATCTCAACAACTTGGAAGAAGATGCTAAATATAAACAGTGGAGGAACAATTTGGATGAGATCTTGATGCCAGTCTTCCCTGGGCAGCTACGTTACATCCGTAAAAACCTTTTCCATGCTGTCTTTGTTCTTGACCCAGCAACCCGTTGTGGTCTGGAGTCCATTGATATGATCATATCATTGTATGAAAATGATTTTCCTGTGAGATTTGGGATTGTGTTGTATTCTTCGAAGTTTGTCACACAGTTAGAAAATCATGCTACAAAAGAGCACAGCGATGAAGATATTTCTACTATGATCATATGTCTCTTCAGTTATATCAATGAGAATTATGGTGCTGAGATGGCTTACCAGTTTTTGAGAAATGTTAACAAATTACACATTGAGTCAGATGGCGATGCTGACGAAGCTCTTGAAACGCACCATGTTGAAGGAGTGTTTGTGGAAACAATATTATCAAAGGTAAAATCCCCACCTCAAGAGATATTACTAAAGCTGTATAAGGATCAAAAGTTGAAGGAATTGTCACAAGAAAGCTCTAAGTTTGTATTTAAGCTTGGTTTGTCTAAGCTTCAATGTTCATTTTTGATGAATGGCCTTATTATTGATCCCACTGAGGAAGCTCTTATAGATGCCTTGAGTGATGAGACTCAAAGAATACAGGAACAAGTATATTATGGACAAATGATGTCTGACACTGATGTATTAGCTAAGTTTCTATCAGAAGCTGGTATACAACGTTATAATCCTAAGATTATTTCTGACAGCAAACCTAGGTTCATACCTCTGTCAATGTTTACTCTTGGGGAGGAATCTGTACTAAATGACATTGTCTACTTGCATTCTCCTGGAACAATTGATGATACAAAGGCTGTGACGCATCTTCTTGCTGTTGATATCACTTCAAGGAATGGGATGAAATTACTTCAACAAGGCATACATTATCTGATAGAAGGATCCAAAAATGCTCGTGTAGGTCTTCTGTTTAATGCCAATCCAAGTCCTAATTTGTTTAGCCTCCTATTTGTTAAGGTCTTTGAAATCACTGCATCCTTATATAGTCATAAGACAAACGTATTGGACTTCTTGGATCAGCTATGCTCACTATATGAGAAGAATTACATCCTTTCACCTGCTATGGAAGCTGAGAGCACTGAAGCATTTGTTGATATGGTTTGCGAGCTTAGTAAAGCTAATGGGTTACCGTCTAAGGGCTATAGGTTTGCCCTCCCAGAATTTCCTGCTGGTGAAGTGAGAAAACATTTTACTAAGGTGCAGAATTCTTTGTATAGGGTGCTTGGGCTTGAATCTGGTGTCAATGCTGTCTTCACTAATGGAAGGGTAACTTATCCAATTGACAAAAGCACATTTTTGACTGCTGATCTGCATCTTCTGGAATCAATAGAATTTAAACAAAGGACAAAGCACATTGTGGAAATTATTGAAGAGGTGGAATGGCGTGATGTTGACCCCGACACTATAACAAGCAAATTCATTAGTGATATTGTCATGGCCTTATCATCTTCAATGGCCAAGCGGGATCGGAATTCTGAAAGTGCTCGTTTTGAGATTCTGAATGATCAGCATAGTGCCATTATTCTAAATAATGAAAATTCAAGTATTCATATTGATGCGGTTCTTGATCCTTTAAGTCCAACCAGCCAGAGGTTGTCTGGAATTCTTCGAGTTTTGTGGAAATACATTCAGCCCAGCATGAGGATTGTACTGAATCCAGTGAGTTCTCTTGCTGATCTTCCTCTGAAGAGCTACTACAGATATGTAGTACCAACAATGGATGATTTTAGCAACACTGACTCTGCAATAAATGGTCCAAAAGCATTCTTTGCAAACATGCCGTTGTCTAAGACTCTCACCATGAATCTTGATGTTCCTGAGTCTTGGCTTGTTGAGCCTGTTATTGCATTCCATGACCTGGATAACATTCTTCTTGAGAACCTTGGCAACACAAGGACATTGCAAGCAGTTTTTGAGCTTGAAGCTCTTGTCCTCACTGGTCATTTTTCTGAGAAAGATCATGACCCTCCTCGGGGACTTCAGCTGATCCTTGGGACGAAAACTACACCCCATTTAGTTGATACCCTTGTGATGGACAACCTGGGATATTGGCAAATGAAAGTCTCACCTGGAGTTTGGTACTTGCAGCTTGCTCCTGGAAGAAGTTCCGAGCTTTACATTTTAAAGGAAGATAGTGAAGGAAATTATGATAAAAAATCATCAAAACTCATTACTATTAATGATTTTCGGGGTAAAGTATTTCATATGGAAGTAGTGAAAAAAAAGGGCAAGGAGCATGAGAAATTACTCCTTCTTGATGACAATGCACAAGATAATAAGAAAGGAAGTGGCTTGAATTCCAACTTCTTAAAATGGGCTTCTGGTTTCATTGGCAGCAACAAATCATCCAAAAAGGCTGAAAAAAGTCCACAAGAGAAAGGAAAGGGTGGACGACATGGAAAAACTATTAATATCTTTTCTATTGCTTCTGGGCACCTATATGAACGCTTTATGAAGATTATGATTCTAAGTGTTCTAAAGAATACTCATCGTCCTGTTAAATTCTGGTTCATAAAGAACTACCTCTCTCCTCCTTTTAAGGACTTGATTCCACACATGGCCCTAGAGTATGGTTTTGAATATGAACTAGTCACATACAAGTGGCCCACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAAGAATTTGGGCATATAAAATCTTATTCCTAGATGTCATTTTCCCCCTTTCTTTGGAGAAGGTCATTTTTGTGGATGCTGATCAAGTTGTTAGGGCAGACATGGGAGTACTCTATGACATGGATATAAGAGGAAAACCCCTGGCATATACCCCATTTTGTGATAATAATAAGGAGATGGATGGATATAGGTTTTGGAGACAAGGTTTCTGGAAGGATCATTTGCGGGGAAAACCATACCATATTAGTGCTTTATATGTTGTTGATCTGAAGAAGTTCCGAGAGACTGCAGCTGGAGATAATCTTAGAGTTATATATGAAACACTAAGCAAGGATCCAAATAGTCTAGCCAACTTGGATCAGGATCTTCCTAATTATGCTCAGCATACCGTGCCTATTTTCTCTTTGCCACAAGAGTGGCTATGGTGTGAATCATGGTGTGGTAATGCTACAAAATACAAGGCAAAAACCATTGATCTGTGCAACAATCCCATGACAAAAGAACCCAAACTGCAGGGTGCTAGACGAATAGTTTCTGAGTGGCCAGACCTGGATTTTGAGGCAAGAAGATTCACAGCACGAATCTTGGGTGATGATCAAGAATCAGAATCAATACAACCCCCTAATCAATCCAAGGACTTGAATAGTGAAGGTTCATCGAATGAGGACAGGGAATCCAGGGCTGAGTTATGA
>Glyma08g13400.1 sequence type=predicted peptide gene model=Glyma08g13400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGCLWRSRCRVLIVFMLLNIGSAFADTPQRPKNVQTSLRAKWSGTPLLLEAGELLSNEKKDLFWDFIEIWLNTEKDAVSSRTAKDCLKKILECGRPLLREPLKSLFELSLMLRSASPRLVLYQQLAEESLTSFPLGDENYSDNETEEKLQTEKKIERRKVDPLHGVILKSHGGKCCWVDTGEHLFLDFYELLAWLQDSAEQVGDSFQRPEIFDFDHVYYELSVGSPVAILYGAIGTNCFKEFHVALVKAAKEGKVKYVVRPVLPAGCELNINHCGSVGAGESVNLGGYGVELALKNMEYKAMDDSTVKKGVTLEDPRTEDLSQEVRGFIFSKILVRKPELASEVMAFRDYLLSSTVSDTLDVWELKDLGHQTVQRIVRASDPLQSMQEINQNFPSVVSSLSRMKLEDSVRDEIMANQRMVPPGKSLMALNGALVNVEDVDLYLLFDLIHQDLLLADQFSKLKIPQGTLKKLLSTSPPSESSIPRVDFRSSHVHYLNNLEEDAKYKQWRNNLDEILMPVFPGQLRYIRKNLFHAVFVLDPATRCGLESIDMIISLYENDFPVRFGIVLYSSKFVTQLENHATKEHSDEDISTMIICLFSYINENYGAEMAYQFLRNVNKLHIESDGDADEALETHHVEGVFVETILSKVKSPPQEILLKLYKDQKLKELSQESSKFVFKLGLSKLQCSFLMNGLIIDPTEEALIDALSDETQRIQEQVYYGQMMSDTDVLAKFLSEAGIQRYNPKIISDSKPRFIPLSMFTLGEESVLNDIVYLHSPGTIDDTKAVTHLLAVDITSRNGMKLLQQGIHYLIEGSKNARVGLLFNANPSPNLFSLLFVKVFEITASLYSHKTNVLDFLDQLCSLYEKNYILSPAMEAESTEAFVDMVCELSKANGLPSKGYRFALPEFPAGEVRKHFTKVQNSLYRVLGLESGVNAVFTNGRVTYPIDKSTFLTADLHLLESIEFKQRTKHIVEIIEEVEWRDVDPDTITSKFISDIVMALSSSMAKRDRNSESARFEILNDQHSAIILNNENSSIHIDAVLDPLSPTSQRLSGILRVLWKYIQPSMRIVLNPVSSLADLPLKSYYRYVVPTMDDFSNTDSAINGPKAFFANMPLSKTLTMNLDVPESWLVEPVIAFHDLDNILLENLGNTRTLQAVFELEALVLTGHFSEKDHDPPRGLQLILGTKTTPHLVDTLVMDNLGYWQMKVSPGVWYLQLAPGRSSELYILKEDSEGNYDKKSSKLITINDFRGKVFHMEVVKKKGKEHEKLLLLDDNAQDNKKGSGLNSNFLKWASGFIGSNKSSKKAEKSPQEKGKGGRHGKTINIFSIASGHLYERFMKIMILSVLKNTHRPVKFWFIKNYLSPPFKDLIPHMALEYGFEYELVTYKWPTWLHKQKEKQRRIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGVLYDMDIRGKPLAYTPFCDNNKEMDGYRFWRQGFWKDHLRGKPYHISALYVVDLKKFRETAAGDNLRVIYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKYKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDFEARRFTARILGDDQESESIQPPNQSKDLNSEGSSNEDRESRAEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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