Glyma08g13380 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g13380): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g13380): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma08g13380

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9789612
stop:	9793142
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10940	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr1:3656050-3658170 REVERSE LENGTH=363	SoyBase	E_val: 4.00E-110	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0080022	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0070300	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidic acid binding	SoyBase	N/A	ISS
KOG0583	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24343	Panther	SERINE/THREONINE KINASE	JGI		ISS
PTHR24343:SF58	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_I1KSR2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSR2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8RXH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Osmotic stress-activated protein kinase n=1 Tax=Nicotiana tabacum RepID=Q8RXH5_TOBAC	SoyBase	E_val: 6.00E-116	ISS

Expression Patterns of Glyma08g13380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g13380 not represented in the dataset	Glyma08g13380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g13380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g127000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g13380

Limit To All Plant Sequences

>Glyma08g13380.2   sequence type=transcript   gene model=Glyma08g13380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACTTTATTGGATGGAAGCCCTGCTAATCGCCTTAAAATTTGTGATTTCGGCTATTCTAAGTCATACCTACTTCATTCGAGACCCCATTCAGTGATTGGAACTCCAGCCTATATTGCACCAGAGGTTCTTTCCGGGAAAGATTACGATGGAAAGTTGGCAGATGTATGGTCCTGTGGAGTGATACTTTATACAATGTTGGTAGGAGCATTGCCATTTGAGGACATAAAGGATACCGAAAATTTCCAGAAAACCATAAAACGAGTTATGGCTGTTCAATACAAGTTCCCTGAAAGAGTTTGCATATCTCAAGACAGTAAAAATCTGATATCTCGCATTTTTGTGGCAAATCCAGCAATGAGAATCACCATGAAGGAAATCAAGTCACATCCTTGGTTTTTAAAGAACTTGCCTAAGGAATTGAGAGACGGGGCTCAAGATGTCTACTACAATGAAGAAAATACAAAATATCCTCTTCAAAGTATAGAAGAGATCATGAACATTGTCAACGAGGCCAAAACTACAACTGCAACTTCCAGTCCATATCTATAGTGGAGATTGATTGGAAATTAATGTAAGAAAAAATAATGCTTAATTAGGTACATGAAATCATTTATGAGAAGTGAGTCAAGGAAGCACAAACTATTAATGTATGTAAGAAAAAATAATGCTTAATTAGATTTTTGGCTCACTTTTCCCCCCTAACTTAAGGCGAATGTTTTGCCTGTATCTATGTATCAAATTTAGTTTTATGACATAAAGTTTAACTGTGCATTTTTGTTGATGTGGCACAAGGTTTGTAGTTGTGACAGCATTGTGATTTGTAAGTATGAGGTCTTCGTTTTCTCCCCTCTAAATATGATGTTATGTTCAGTCTTC

Coding sequences of Glyma08g13380

Limit To All Plant Sequences

>Glyma08g13380.1   sequence type=CDS   gene model=Glyma08g13380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGTACGAGGTAGTGAATGAGGAGATAGGGATTGGGAGAGACGCGGTCGTAAGACTTATGCGTTGCAAAGAAACTAAGGATCTCGTTGCCGTCAAATACATCCCACGGGAAGACAGGATTATTGATGAGAAGGTGGCAAGGGAAATCATAAACCTTAGATCTCTTCGTCATCCGAATATTGTTCGGTTCAAGGAGGTGGCTTTGACTCCAACGCATCTTGCAATAGTTATGGAGTATGCAGCGGGTGGAGAGCTGTATAACCGAGTTTGCAACGGAAGAATACGTGAAGACGAGTCATACCTACTTCATTCGAGACCCCATTCAGTGATTGGAACTCCAGCCTATATTGCACCAGAGGTTCTTTCCGGGAAAGATTACGATGGAAAGTTGGCAGATGTATGGTCCTGTGGAGTGATACTTTATACAATGTTGGTAGGAGCATTGCCATTTGAGGACATAAAGGATACCGAAAATTTCCAGAAAACCATAAAACGAGTTATGGCTGTTCAATACAAGTTCCCTGAAAGAGTTTGCATATCTCAAGACAGTAAAAATCTGATATCTCGCATTTTTGTGGCAAATCCAGCAATGAGAATCACCATGAAGGAAATCAAGTCACATCCTTGGTTTTTAAAGAACTTGCCTAAGGAATTGAGAGACGGGGCTCAAGATGTCTACTACAATGAAGAAAATACAAAATATCCTCTTCAAAGTATAGAAGAGATCATGAACATTGTCAACGAGGCCAAAACTACAACTGCAACTTCC

>Glyma08g13380.2   sequence type=CDS   gene model=Glyma08g13380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGTAGGAGCATTGCCATTTGAGGACATAAAGGATACCGAAAATTTCCAGAAAACCATAAAACGAGTTATGGCTGTTCAATACAAGTTCCCTGAAAGAGTTTGCATATCTCAAGACAGTAAAAATCTGATATCTCGCATTTTTGTGGCAAATCCAGCAATGAGAATCACCATGAAGGAAATCAAGTCACATCCTTGGTTTTTAAAGAACTTGCCTAAGGAATTGAGAGACGGGGCTCAAGATGTCTACTACAATGAAGAAAATACAAAATATCCTCTTCAAAGTATAGAAGAGATCATGAACATTGTCAACGAGGCCAAAACTACAACTGCAACTTCCAGTCCATATCTATAG

Predicted protein sequences of Glyma08g13380

Limit To All Plant Sequences

>Glyma08g13380.1   sequence type=predicted peptide   gene model=Glyma08g13380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKYEVVNEEIGIGRDAVVRLMRCKETKDLVAVKYIPREDRIIDEKVAREIINLRSLRHPNIVRFKEVALTPTHLAIVMEYAAGGELYNRVCNGRIREDESYLLHSRPHSVIGTPAYIAPEVLSGKDYDGKLADVWSCGVILYTMLVGALPFEDIKDTENFQKTIKRVMAVQYKFPERVCISQDSKNLISRIFVANPAMRITMKEIKSHPWFLKNLPKELRDGAQDVYYNEENTKYPLQSIEEIMNIVNEAKTTTATS

>Glyma08g13380.2   sequence type=predicted peptide   gene model=Glyma08g13380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVGALPFEDIKDTENFQKTIKRVMAVQYKFPERVCISQDSKNLISRIFVANPAMRITMKEIKSHPWFLKNLPKELRDGAQDVYYNEENTKYPLQSIEEIMNIVNEAKTTTATSSPYL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain