Glyma08g13330 - SoyBase

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Report for Sequence Feature Glyma08g13330

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9749492
stop:	9754179
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G58110	AT	Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein \| chr1:21515919-21517374 REVERSE LENGTH=374	SoyBase	E_val: 1.00E-119	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0009612	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus	SoyBase	N/A	ISS
GO:0019722	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR13301	Panther	X-BOX TRANSCRIPTION FACTOR-RELATED	JGI		ISS
PTHR13301:SF28	Panther		JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
UniRef100_G7L8T7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bZIP63 n=2 Tax=Medicago truncatula RepID=G7L8T7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KSQ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KSQ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13330

Paralog	Evidence	Comments
Glyma05g30170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g126500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g13330

Limit To All Plant Sequences

>Glyma08g13330.1   sequence type=CDS   gene model=Glyma08g13330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAATTCAAAGGGCTCATCGAGTTTCAGAAATTTTATGTATCCTGGAAAGCATCCTCTACTTCCTCCTAAAAGTCCGTTTCCTAGTGTTTCCCAAGCATATGCTGATTATGTCCCAAATCCCGCTGTTGGTTTAAAGGCTGGTAACAGACCGAGAGATGGAAACACACACCACCAACGTACTTCATCTGAGAGCCTAGTTATAGAGGAGCAGCCTTCATGGCTTGATGATCTCCTTAATGAGCCAGAGACACCTGTCCGAAGAGGTGGACATCGACGTTCATCAAGTGATTCTTTTGCGTACATAGACACTGTTAATGCATCTAACCTCAATTATGCTAGTCAGGACGAATATAAATATAAGAATATGATGTCTATTCCACCTTGGTCACCTCAAGATTTTGACTGCAGCAAAGATGCTCGTCATGTGCCTGTTTATGCAGAAATGAACTCCACAAAACAGAAAAATAGGTCATGGGACTCTTTTTCAAATGCCATGACAAATCCAGTTGGTGTTCCCTCAGGCAAAGACAGTGCTGCTTTTCAGAGTTCAGGATTGCAATGTACACCACATGAAGCAGATGCTCTTCCACCAGCTGCAAGTGAAAAGCATGATTCAGTAGAATTGGGTTTACAGGATGCAAAATCCTTTCCTGAAAAAAAGGACATTTCACATGCAAAGTCATCTGCCTCTGAAACTGATACAAAACGTGCTAAACAGCAATTTGCTCAACGTTCACGGGTCCGGAAACTTCAATACATAGCGGAGCTGGAAAGGAATGTACAAGCTTTACAGGCAGAAGGGTCTGAAGTCTCAGCCGAGCTTGAGTTTCTTAACCAGCAGAATCTTATCCTGAGTATGGAGAATAAAGCACTCAAGCAACGTCTAGAAAATATAGCACAAGAGCAGCTTATCAAATATTTGGAGCAGGAAGTACTGGAAAGAGAGATTGGAAGATTACGTGCATTGTATCAACAGCAGCAACAACCACCACAGACACAGCCACAACAGCAACCATCTGGTAGTCACAGACGCTCGAACAGTAGAGAACTCGAATCTCAGTTTGCAAACCTTTCTCTAAAACACAAGGACACCAATTCAGGGCAAGACCCTGCTCTCAGAATTTAG

Predicted protein sequences of Glyma08g13330

Limit To All Plant Sequences

>Glyma08g13330.1   sequence type=predicted peptide   gene model=Glyma08g13330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANSKGSSSFRNFMYPGKHPLLPPKSPFPSVSQAYADYVPNPAVGLKAGNRPRDGNTHHQRTSSESLVIEEQPSWLDDLLNEPETPVRRGGHRRSSSDSFAYIDTVNASNLNYASQDEYKYKNMMSIPPWSPQDFDCSKDARHVPVYAEMNSTKQKNRSWDSFSNAMTNPVGVPSGKDSAAFQSSGLQCTPHEADALPPAASEKHDSVELGLQDAKSFPEKKDISHAKSSASETDTKRAKQQFAQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSMENKALKQRLENIAQEQLIKYLEQEVLEREIGRLRALYQQQQQPPQTQPQQQPSGSHRRSNSRELESQFANLSLKHKDTNSGQDPALRI*

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