Glyma08g13310 - SoyBase

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Report for Sequence Feature Glyma08g13310

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9739928
stop:	9744128
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G06634	AT	Annotation by Michelle Graham. TAIR10: zinc finger (C2H2 type) family protein \| chr4:3764499-3766439 REVERSE LENGTH=387	SoyBase	E_val: 2.00E-149	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR14003	Panther	TRANSCRIPTIONAL REPRESSOR PROTEIN YY	JGI		ISS
PTHR14003:SF2	Panther	TRANSCRIPTIONAL REPRESSOR PROTEIN YY1	JGI		ISS
PF00096	PFAM	Zinc finger, C2H2 type	JGI		ISS
UniRef100_B9SSP5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSP5_RICCO	SoyBase	E_val: 1.00E-178	ISS
UniRef100_UPI000233925F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233925F related cluster n=1 Tax=unknown RepID=UPI000233925F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13310

Paralog	Evidence	Comments
Glyma05g30150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g126300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g13310

Limit To All Plant Sequences

>Glyma08g13310.2   sequence type=transcript   gene model=Glyma08g13310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGGAAGAGCGTAGCGGAGATGGAGATTCACTACAGTAACAGCTACTTCGAGAGGCGCCCCATCCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTCAAAGAATGGGTTCCCCAAGATCTTGTGACGACGGGAGGGAAGTGCATGATCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTGAAAGAAAAGGTGAAAGAGCCTTCAGTGCCAGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCGTTGAGGAAACATTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTACGATGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCTCAAGAGAACTATCATATCTGCCCATATCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGCAGAATGCACCCTTGGATGTGGCAAAGTACACTACTCCACCTCCAGAGAAGCAAACAAAAACTTCTAAACCATCTGGAGGGGCATACGGTTCTGCATCATCTGACCGTCCCTATGCATGTCCCTATGATGGGTGTGAAAAGGCATACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCACCCGGGGCTTATGGCTGATGAAAATGCAGAGCATGCTCAGGCTAATGTTGGCAATGAAATGGATGAAGCAAGTGACCATGATGCCTATGTTGCGAAACGGTCAAATGGTAAAATTCAGAAGCAGAGTAAGCCAAAACCAAACCTCAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGTCTCCACTCCCACTTTAACTGTAAATAAAAATTCTTGGCCCGTGAAAGATGAACCTTTCGATGAAGAAGATAGTGAAGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCAGGAGGAAACAATGAAGATGATGATGAAGAAACAGAATATGAAGACTGAATCAGTTATGGCATCCTCTATGGAACTTACCTTTTTCAAGAAGTATATTTCTCTTCTACAATTGTTTTTTGGGTTGTCGCTTTTTTATTTGGCTTTGGAAATGACATCTTGTCAAACTGTGTGTTGGCTGTTACAAGCATTAGGAAGAATTTATATAAATAAAATGCGATTTAAAATGCTCTTGGTTCAGTTGTCATCCGTTGACACCGCAAGATTCTGACTGAATTTTGAAGACTTTGGATAAACCTTGGAATGGAGGTATAATTCTGTCATCCTGTC

Coding sequences of Glyma08g13310

Limit To All Plant Sequences

>Glyma08g13310.1   sequence type=CDS   gene model=Glyma08g13310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTCACTACAGTAACAGCTACTTCGAGAGGCGCCCCATCCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTCAAAGAATGGGTTCCCCAAGATCTTGTGACGACGGGAGGGAAGTGCATGATCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTGAAAGAAAAGGTGAAAGAGCCTTCAGTGCCAGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCGTTGAGGAAACATTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTACGATGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCTCAAGAGAACTATCATATCTGCCCATATCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGAATGCACCCTTGGATGTGGCAAAGTACACTACTCCACCTCCAGAGAAGCAAACAAAAACTTCTAAACCATCTGGAGGGGCATACGGTTCTGCATCATCTGACCGTCCCTATGCATGTCCCTATGATGGGTGTGAAAAGGCATACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCACCCGGGGCTTATGGCTGATGAAAATGCAGAGCATGCTCAGGCTAATGTTGGCAATGAAATGGATGAAGCAAGTGACCATGATGCCTATGTTGCGAAACGGTCAAATGGTAAAATTCAGAAGCAGAGTAAGCCAAAACCAAACCTCAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGTCTCCACTCCCACTTTAACTGTAAATAAAAATTCTTGGCCCGTGAAAGATGAACCTTTCGATGAAGAAGATAGTGAAGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCAGGAGGAAACAATGAAGATGATGATGAAGAAACAGAATATGAAGACTGA

>Glyma08g13310.2   sequence type=CDS   gene model=Glyma08g13310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTCACTACAGTAACAGCTACTTCGAGAGGCGCCCCATCCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTCAAAGAATGGGTTCCCCAAGATCTTGTGACGACGGGAGGGAAGTGCATGATCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTGAAAGAAAAGGTGAAAGAGCCTTCAGTGCCAGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCGTTGAGGAAACATTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTACGATGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCTCAAGAGAACTATCATATCTGCCCATATCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGCAGAATGCACCCTTGGATGTGGCAAAGTACACTACTCCACCTCCAGAGAAGCAAACAAAAACTTCTAAACCATCTGGAGGGGCATACGGTTCTGCATCATCTGACCGTCCCTATGCATGTCCCTATGATGGGTGTGAAAAGGCATACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCACCCGGGGCTTATGGCTGATGAAAATGCAGAGCATGCTCAGGCTAATGTTGGCAATGAAATGGATGAAGCAAGTGACCATGATGCCTATGTTGCGAAACGGTCAAATGGTAAAATTCAGAAGCAGAGTAAGCCAAAACCAAACCTCAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGTCTCCACTCCCACTTTAACTGTAAATAAAAATTCTTGGCCCGTGAAAGATGAACCTTTCGATGAAGAAGATAGTGAAGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCAGGAGGAAACAATGAAGATGATGATGAAGAAACAGAATATGAAGACTGA

Predicted protein sequences of Glyma08g13310

Limit To All Plant Sequences

>Glyma08g13310.1   sequence type=predicted peptide   gene model=Glyma08g13310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIHYSNSYFERRPILKSKAPAVKWVKEWVPQDLVTTGGKCMILKWVTEDTLKTLKEKVKEPSVPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNAPLDVAKYTTPPPEKQTKTSKPSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGLMADENAEHAQANVGNEMDEASDHDAYVAKRSNGKIQKQSKPKPNLKLPPSKIAKRKVSTPTLTVNKNSWPVKDEPFDEEDSEETEEDRDNVEDGWRYAGGNNEDDDEETEYED*

>Glyma08g13310.2   sequence type=predicted peptide   gene model=Glyma08g13310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIHYSNSYFERRPILKSKAPAVKWVKEWVPQDLVTTGGKCMILKWVTEDTLKTLKEKVKEPSVPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKQNAPLDVAKYTTPPPEKQTKTSKPSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGLMADENAEHAQANVGNEMDEASDHDAYVAKRSNGKIQKQSKPKPNLKLPPSKIAKRKVSTPTLTVNKNSWPVKDEPFDEEDSEETEEDRDNVEDGWRYAGGNNEDDDEETEYED*

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