Glyma08g13290 - SoyBase

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Report for Sequence Feature Glyma08g13290

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9716873
stop:	9724156
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31810	AT	Annotation by Michelle Graham. TAIR10: ACT domain-containing small subunit of acetolactate synthase protein \| chr2:13524271-13528246 FORWARD LENGTH=491	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009082	GO-bp	Annotation by Michelle Graham. GO Biological Process: branched-chain amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003984	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetolactate synthase activity	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
KOG2663	KOG	Acetolactate synthase, small subunit	JGI		ISS
PF01842	PFAM	ACT domain	JGI		ISS
PF10369	PFAM	Small subunit of acetolactate synthase	JGI		ISS
UniRef100_G7L8T1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acetolactate synthase small subunit n=1 Tax=Medicago truncatula RepID=G7L8T1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KSP9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSP9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13290

Paralog	Evidence	Comments
Glyma05g30130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g126100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g13290

Limit To All Plant Sequences

>Glyma08g13290.1   sequence type=CDS   gene model=Glyma08g13290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCATTCTATCTCCAATCCAAACCCTCAAATTCCGTTCTCCCAATCCCAAACCTCTCTTCTCTCCCAAACCGCCTCCCATCTCCACACCTCTCACCTTCCGCGCCGATAAACTCACTCTCTTCGTCTCCTCCGCCACCTCCTCCGCCACCGTCTCCACCAACGGCCCTCCCTCTCCTCCCTCCCCTGCTCGCTCAAAGGTTCGGCGACACACGATTTCCGTGTTCGTCGGCGATGAGAGCGGAATGATAAACCGGATTGCTGGCGTGTTCGCGAGGAGAGGATACAACATCGAGTCGCTCGCCGTTGGCCTCAATGAGGACAGGGCGCTCTTCACCATCGTCGTGTCAGGGACTGATAAGGTGCTGCGCCAAGTCATGGAGCAGCTTCAGAAGCTCGTCAATGTCTTAAAGGTAGAGGATCTTTCGAGGGAACCGCAGGTGGAACGTGAACTGATGCTCATAAAAGTGCATGCGGATCCGAAGCACCATGCGGAGTTGAAGTGGTTGGTGGACATCTTCAGAGCTAAGATTGTGGATATCTCGCAACATTCGGTGACAATTGAGGTCACTGGAGATCCAGGGAAGATGGCTGCGGTTCAAAGAAATTTCAGCAAGTTTGGAATTAAAGAGATAGCCAGAACTGGAAAGATTGCATTAAGAAGGGAAAAGATGGGTGCATCTGCTCCATTTTGGCGGTATTCAGCTGCTTCTTATCCAGATCTTGAAGGAAGAACACCTGTGAATGCCATGGTGGGAGCAAAAAATATGAAACCTGTTGCCAAACATGATACACCTGTGGGGGGAGATGTTTATCCTATAGAGCCACCAGATGGTTTTACAGTCAATCAAGTACTTGATGCTCACTGGGGTGTCCTCAATGAAGAAGATACTAGTGGAATTCGATCACACACTTTATCCATGCTTGTGAACGATGCTCCTGGAGTTCTAAACATTGTTACAGGAGTTTTTGCTAGAAGAGGCTATAACATTCAGAGTTTAGCTGTAGGACATGCAGAAGTTGAAGGACTTTCTCGACTTACGACTGTGGTTCCTGGGACAGATGAGTCAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATAAAGATTGCTGTAAATGCTGCTGCACGGCGTGATGTCCTTGATATTGCTAGCATTTTCCGGGCTAAAGCCGTTGATGTATCTGGTCACACAATAACTCTGGAGCTTACTGGAGATTTGGACAAGATGGTTGCATTGCAGAGATTGTTAGAACCATATGGCATTTGTGAGGTGGCACGAACTGGGCGAATTGCTCTAGTCCGTGAGTCAGGTGTGGACTCCAAGTACTTGCGTGGATACTCTTATCCTTTGTAA

Predicted protein sequences of Glyma08g13290

Limit To All Plant Sequences

>Glyma08g13290.1   sequence type=predicted peptide   gene model=Glyma08g13290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATILSPIQTLKFRSPNPKPLFSPKPPPISTPLTFRADKLTLFVSSATSSATVSTNGPPSPPSPARSKVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNEDRALFTIVVSGTDKVLRQVMEQLQKLVNVLKVEDLSREPQVERELMLIKVHADPKHHAELKWLVDIFRAKIVDISQHSVTIEVTGDPGKMAAVQRNFSKFGIKEIARTGKIALRREKMGASAPFWRYSAASYPDLEGRTPVNAMVGAKNMKPVAKHDTPVGGDVYPIEPPDGFTVNQVLDAHWGVLNEEDTSGIRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHAEVEGLSRLTTVVPGTDESISKLVQQLYKLVELHEVRDITHLPFAERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSGHTITLELTGDLDKMVALQRLLEPYGICEVARTGRIALVRESGVDSKYLRGYSYPL*

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