Glyma08g13170 - SoyBase

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Report for Sequence Feature Glyma08g13170

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9607494
stop:	9610787
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G36110	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 716, subfamily A, polypeptide 1 \| chr5:14195377-14197613 FORWARD LENGTH=477	SoyBase	E_val: 5.00E-149	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
KOG0157	KOG	Cytochrome P450 CYP4/CYP19/CYP26 subfamilies	JGI		ISS
PTHR24286	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24286:SF25	Panther		JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_G7L8R4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 n=1 Tax=Medicago truncatula RepID=G7L8R4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KSN6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSN6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13170

Paralog	Evidence	Comments
Glyma05g30050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g125000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g13170

Limit To All Plant Sequences

>Glyma08g13170.2   sequence type=transcript   gene model=Glyma08g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATATCTTATCTGGTCCAGTCTCCAAAGGGCAAGCTCTGTGTGTCTTTCGTCCATCTTACACCTTAGTTTTCCCGGTTCCCAGAATAGTCTTTCATACTCTCCATTGTCTTGTGTCCTTCATCAATAGTTATGGTCTGGTCTTAAGGACACTAAATCTTATGGAGGTGACCAACCTTGTAGTCTTGCCAGCAGTTTCGGCATTCTTTGTCCTTTCTCTACATTTCATCACTAAAGCTGACAGACTCAGGAAACATCCAAACCTCAATCTTCCTCCTGGAAGATTAGGATGTCCTATTGTTGGAGAAACCCTCGAGTTTCTGCGTACAATGAATGAGGGCAACGTGTTAAGGTTCATACAAGAGAGAGTGGAGAAATATGACGCCAGGGTGTTCAAGACTTCAATGTTTGGAGATCCTGTTGTTGTGTTTTGCGGGCCAGCTGGGAACAAGTTCCTATTTAGCAATGAGAACAAGAATGTTCAAGTGTGGTGGCCTAGCTCGGTAAGGAAGTTGTTAAGGTTGTCTCTGGTTAATAAGGTTGGTGATGAGGCTAAGATGGTGAGAAGGTTGCTCATGAGCTTTCTTAATGCAGAAACACTCAGAAACTACTTGCCAAAAATGGATAGCATTGCTCAGCGCCATATAGACACCTATTGGGAAGGGATCATTGGCTTGCCCCTCAACATTCCTGGAACAAGGTTTCATCGTGCAATGAAAGCTGCAGACGTAATAAGGAATGAAATTGAAATGATTTTAAAGAAAAGGAAAGTGGATTTGGAGGAGAAGAGGGCATCACCTACTCAAGACCTTCTATCACACATGCTTGTTACATCTGACCCCAATGGAAGGTTTATGACCGAAATGGAGATTATTGATAACATACTTCTTCTACTCTTTGCTGGCCACGATAGTTCTAGATCAGTGTTATCATTGGTCATGAAGTATCTTGGACAGTTACCTCAAGTTTATGAACATGTCTTGAAAGAACAACTTGAAATTAGTCAAGGGAAAGAGGCTGGGCAGTTGTTGCAATGGGAAGATGTTCAGAAAATGAAATACTCTTGGAATGTTGCATCTGAAGTCATGAGGCTGTCCCCACCTGTGAGTGGTGCTTACAGAGAAGCTATAAAGGATTTCACCTATGGTGACTATAACATCCCTAAAGGGTGGAAGCTGCATTGGAACACCGGTTCATCACACGAGGATCCAGCACTCTTCTCAAATCCCGAAACTTTTGATGCTTCAAGGTTTGAAGGGGCAGGGCCTACACCATTTTCATATGTTCCATTTGGAGGTGGCCCCCGAATGTGTTTGGGGCAAGAGTTTGCTAGACTAGAGATACTTGTGTTCATGCATAATATCGTGAAACGGTTCAAGTGGGATTTGGTGATTCCTGATGAGAAGTTTAAGTATGATCCCTTGTTAGAACCAGTAAAAGGGCTTGCAATTCGACTTCATCCTTCCCATTTCTAGTCAAATACCTTCATCATACGAATAATCCATTGTTTAGAAGTTTTCTAAGTAGTCATCTTATATTGCTATATTAGTATTAGAAAAAAAAAAAAACTTTTTGCTACATTGATTGCCAACGTTTTGTATCTGCATGCTTCCATGAGTTCTATGAAGTATTGATATCATTAAAACTTTGATTATTTGGATTTTTTTACAGCATTAATGGGATTGTTATGTTAAAATGGTTATTCACTTTTTGTATACCCCTATTTGCTAAACTGTCACGCCTTGTGGCAGGTTTAGTGTTCAATAGTATATTCTCGTTTTGCTGTTAAAAAAA

>Glyma08g13170.3   sequence type=transcript   gene model=Glyma08g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATATCTTATCTGGTCCAGTCTCCAAAGGGCAAGCTCTGTGTGTCTTTCGTCCATCTTACACCTTAGTTTTCCCGGTTCCCAGAATAGTCTTTCATACTCTCCATTGTCTTGTGTCCTTCATCAATAGTTATGGTCTGGTCTTAAGGACACTAAATCTTATGGAGGTGACCAACCTTGTAGTCTTGCCAGCAGTTTCGGCATTCTTTGTCCTTTCTCTACATTTCATCACTAAAGCTGACAGACTCAGGAAACATCCAAACCTCAATCTTCCTCCTGGAAGATTAGGATGTCCTATTGTTGGAGAAACCCTCGAGTTTCTGCGTACAATGAATGAGGGCAACGTGTTAAGGTTCATACAAGAGAGAGTGGAGAAATATGACGCCAGGGTGTTCAAGACTTCAATGTTTGGAGATCCTGTTGTTGTGTTTTGCGGGCCAGCTGGGAACAAGTTCCTATTTAGCAATGAGAACAAGAATGTTCAAGTGTGGTGGCCTAGCTCGAAACACTCAGAAACTACTTGCCAAAAATGGATAGCATTGCTCAGCGCCATATAGACACCTATTGGGAAGGAAAAGAGCAGGTGCTTGTCTATCCCATAGTACAGCTATACACGTTTGAATTGGCTTGTTGCTTATTTTTAAGCATTGAAGACTCTGACCATATATCAAAGCTTTCCTTAAAATTTGATGAATTTCTGAAAGGGATCATTGGCTTGCCCCTCAACATTCCTGGAACAAGGTTTCATCGTGCAATGAAAGCTGCAGACGTAATAAGGAATGAAATTGAAATGATTTTAAAGAAAAGGAAAGTGGATTTGGAGGAGAAGAGGGCATCACCTACTCAAGACCTTCTATCACACATGCTTGTTACATCTGACCCCAATGGAAGGTTTATGACCGAAATGGAGATTATTGATAACATACTTCTTCTACTCTTTGCTGGCCACGATAGTTCTAGATCAGTGTTATCATTGGTCATGAAGTATCTTGGACAGTTACCTCAAGTTTATGAACATGTCTTGAAAGAACAACTTGAAATTAGTCAAGGGAAAGAGGCTGGGCAGTTGTTGCAATGGGAAGATGTTCAGAAAATGAAATACTCTTGGAATGTTGCATCTGAAGTCATGAGGCTGTCCCCACCTGTGAGTGGTGCTTACAGAGAAGCTATAAAGGATTTCACCTATGGTGACTATAACATCCCTAAAGGGTGGAAGCTGCATTGGAACACCGGTTCATCACACGAGGATCCAGCACTCTTCTCAAATCCCGAAACTTTTGATGCTTCAAGGTTTGAAGGGGCAGGGCCTACACCATTTTCATATGTTCCATTTGGAGGTGGCCCCCGAATGTGTTTGGGGCAAGAGTTTGCTAGACTAGAGATACTTGTGTTCATGCATAATATCGTGAAACGGTTCAAGTGGGATTTGGTGATTCCTGATGAGAAGTTTAAGTATGATCCCTTGTTAGAACCAGTAAAAGGGCTTGCAATTCGACTTCATCCTTCCCATTTCTAGTCAAATACCTTCATCATACGAATAATCCATTGTTTAGAAGTTTTCTAAGTAGTCATCTTATATTGCTATATTAGTATTAGAAAAAAAAAAAAACTTTTTGCTACATTGATTGCCAACGTTTTGTATCTGCATGCTTCCATGAGTTCTATGAAGTATTGATATCATTAAAACTTTGATTATTTGGATTTTTTTACAGCATTAATGGGATTGTTATGTTAAAATGGTTATTCACTTTTTGTATACCCCTATTTGCTAAACTGTCACGCCTTGTGGCAGGTTTAGTGTTCAATAGTATATTCTCGTTTTGCTGTTAAAAAAA

Coding sequences of Glyma08g13170

Limit To All Plant Sequences

>Glyma08g13170.1   sequence type=CDS   gene model=Glyma08g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTGACCAACCTTGTAGTCTTGCCAGCAGTTTCGGCATTCTTTGTCCTTTCTCTACATTTCATCACTAAAGCTGACAGACTCAGGAAACATCCAAACCTCAATCTTCCTCCTGGAAGATTAGGATGTCCTATTGTTGGAGAAACCCTCGAGTTTCTGCGTACAATGAATGAGGGCAACGTGTTAAGGTTCATACAAGAGAGAGTGGAGAAATATGACGCCAGGGTGTTCAAGACTTCAATGTTTGGAGATCCTGTTGTTGTGTTTTGCGGGCCAGCTGGGAACAAGTTCCTATTTAGCAATGAGAACAAGAATGTTCAAGTGTGGTGGCCTAGCTCGGTAAGGAAGTTGTTAAGGTTGTCTCTGGTTAATAAGGTTGGTGATGAGGCTAAGATGGTGAGAAGGTTGCTCATGAGCTTTCTTAATGCAGAAACACTCAGAAACTACTTGCCAAAAATGGATAGCATTGCTCAGCGCCATATAGACACCTATTGGGAAGGAAAAGAGCAGGTGCTTGTCTATCCCATAGTACAGCTATACACGTTTGAATTGGCTTGTTGCTTATTTTTAAGCATTGAAGACTCTGACCATATATCAAAGCTTTCCTTAAAATTTGATGAATTTCTGAAAGGGATCATTGGCTTGCCCCTCAACATTCCTGGAACAAGGTTTCATCGTGCAATGAAAGCTGCAGACGTAATAAGGAATGAAATTGAAATGATTTTAAAGAAAAGGAAAGTGGATTTGGAGGAGAAGAGGGCATCACCTACTCAAGACCTTCTATCACACATGCTTGTTACATCTGACCCCAATGGAAGGTTTATGACCGAAATGGAGATTATTGATAACATACTTCTTCTACTCTTTGCTGGCCACGATAGTTCTAGATCAGTGTTATCATTGGTCATGAAGTATCTTGGACAGTTACCTCAAGTTTATGAACATGTCTTGAAAGAACAACTTGAAATTAGTCAAGGGAAAGAGGCTGGGCAGTTGTTGCAATGGGAAGATGTTCAGAAAATGAAATACTCTTGGAATGTTGCATCTGAAGTCATGAGGCTGTCCCCACCTGTGAGTGGTGCTTACAGAGAAGCTATAAAGGATTTCACCTATGGTGACTATAACATCCCTAAAGGGTGGAAGCTGCATTGGAACACCGGTTCATCACACGAGGATCCAGCACTCTTCTCAAATCCCGAAACTTTTGATGCTTCAAGGTTTGAAGGGGCAGGGCCTACACCATTTTCATATGTTCCATTTGGAGGTGGCCCCCGAATGTGTTTGGGGCAAGAGTTTGCTAGACTAGAGATACTTGTGTTCATGCATAATATCGTGAAACGGTTCAAGTGGGATTTGGTGATTCCTGATGAGAAGTTTAAGTATGATCCCTTGTTAGAACCAGTAAAAGGGCTTGCAATTCGACTTCATCCTTCCCATTTCTAG

>Glyma08g13170.2   sequence type=CDS   gene model=Glyma08g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTGACCAACCTTGTAGTCTTGCCAGCAGTTTCGGCATTCTTTGTCCTTTCTCTACATTTCATCACTAAAGCTGACAGACTCAGGAAACATCCAAACCTCAATCTTCCTCCTGGAAGATTAGGATGTCCTATTGTTGGAGAAACCCTCGAGTTTCTGCGTACAATGAATGAGGGCAACGTGTTAAGGTTCATACAAGAGAGAGTGGAGAAATATGACGCCAGGGTGTTCAAGACTTCAATGTTTGGAGATCCTGTTGTTGTGTTTTGCGGGCCAGCTGGGAACAAGTTCCTATTTAGCAATGAGAACAAGAATGTTCAAGTGTGGTGGCCTAGCTCGGTAAGGAAGTTGTTAAGGTTGTCTCTGGTTAATAAGGTTGGTGATGAGGCTAAGATGGTGAGAAGGTTGCTCATGAGCTTTCTTAATGCAGAAACACTCAGAAACTACTTGCCAAAAATGGATAGCATTGCTCAGCGCCATATAGACACCTATTGGGAAGGGATCATTGGCTTGCCCCTCAACATTCCTGGAACAAGGTTTCATCGTGCAATGAAAGCTGCAGACGTAATAAGGAATGAAATTGAAATGATTTTAAAGAAAAGGAAAGTGGATTTGGAGGAGAAGAGGGCATCACCTACTCAAGACCTTCTATCACACATGCTTGTTACATCTGACCCCAATGGAAGGTTTATGACCGAAATGGAGATTATTGATAACATACTTCTTCTACTCTTTGCTGGCCACGATAGTTCTAGATCAGTGTTATCATTGGTCATGAAGTATCTTGGACAGTTACCTCAAGTTTATGAACATGTCTTGAAAGAACAACTTGAAATTAGTCAAGGGAAAGAGGCTGGGCAGTTGTTGCAATGGGAAGATGTTCAGAAAATGAAATACTCTTGGAATGTTGCATCTGAAGTCATGAGGCTGTCCCCACCTGTGAGTGGTGCTTACAGAGAAGCTATAAAGGATTTCACCTATGGTGACTATAACATCCCTAAAGGGTGGAAGCTGCATTGGAACACCGGTTCATCACACGAGGATCCAGCACTCTTCTCAAATCCCGAAACTTTTGATGCTTCAAGGTTTGAAGGGGCAGGGCCTACACCATTTTCATATGTTCCATTTGGAGGTGGCCCCCGAATGTGTTTGGGGCAAGAGTTTGCTAGACTAGAGATACTTGTGTTCATGCATAATATCGTGAAACGGTTCAAGTGGGATTTGGTGATTCCTGATGAGAAGTTTAAGTATGATCCCTTGTTAGAACCAGTAAAAGGGCTTGCAATTCGACTTCATCCTTCCCATTTCTAG

>Glyma08g13170.3   sequence type=CDS   gene model=Glyma08g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGCATTGCTCAGCGCCATATAGACACCTATTGGGAAGGAAAAGAGCAGGTGCTTGTCTATCCCATAGTACAGCTATACACGTTTGAATTGGCTTGTTGCTTATTTTTAAGCATTGAAGACTCTGACCATATATCAAAGCTTTCCTTAAAATTTGATGAATTTCTGAAAGGGATCATTGGCTTGCCCCTCAACATTCCTGGAACAAGGTTTCATCGTGCAATGAAAGCTGCAGACGTAATAAGGAATGAAATTGAAATGATTTTAAAGAAAAGGAAAGTGGATTTGGAGGAGAAGAGGGCATCACCTACTCAAGACCTTCTATCACACATGCTTGTTACATCTGACCCCAATGGAAGGTTTATGACCGAAATGGAGATTATTGATAACATACTTCTTCTACTCTTTGCTGGCCACGATAGTTCTAGATCAGTGTTATCATTGGTCATGAAGTATCTTGGACAGTTACCTCAAGTTTATGAACATGTCTTGAAAGAACAACTTGAAATTAGTCAAGGGAAAGAGGCTGGGCAGTTGTTGCAATGGGAAGATGTTCAGAAAATGAAATACTCTTGGAATGTTGCATCTGAAGTCATGAGGCTGTCCCCACCTGTGAGTGGTGCTTACAGAGAAGCTATAAAGGATTTCACCTATGGTGACTATAACATCCCTAAAGGGTGGAAGCTGCATTGGAACACCGGTTCATCACACGAGGATCCAGCACTCTTCTCAAATCCCGAAACTTTTGATGCTTCAAGGTTTGAAGGGGCAGGGCCTACACCATTTTCATATGTTCCATTTGGAGGTGGCCCCCGAATGTGTTTGGGGCAAGAGTTTGCTAGACTAGAGATACTTGTGTTCATGCATAATATCGTGAAACGGTTCAAGTGGGATTTGGTGATTCCTGATGAGAAGTTTAAGTATGATCCCTTGTTAGAACCAGTAAAAGGGCTTGCAATTCGACTTCATCCTTCCCATTTCTAG

Predicted protein sequences of Glyma08g13170

Limit To All Plant Sequences

>Glyma08g13170.1   sequence type=predicted peptide   gene model=Glyma08g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVTNLVVLPAVSAFFVLSLHFITKADRLRKHPNLNLPPGRLGCPIVGETLEFLRTMNEGNVLRFIQERVEKYDARVFKTSMFGDPVVVFCGPAGNKFLFSNENKNVQVWWPSSVRKLLRLSLVNKVGDEAKMVRRLLMSFLNAETLRNYLPKMDSIAQRHIDTYWEGKEQVLVYPIVQLYTFELACCLFLSIEDSDHISKLSLKFDEFLKGIIGLPLNIPGTRFHRAMKAADVIRNEIEMILKKRKVDLEEKRASPTQDLLSHMLVTSDPNGRFMTEMEIIDNILLLLFAGHDSSRSVLSLVMKYLGQLPQVYEHVLKEQLEISQGKEAGQLLQWEDVQKMKYSWNVASEVMRLSPPVSGAYREAIKDFTYGDYNIPKGWKLHWNTGSSHEDPALFSNPETFDASRFEGAGPTPFSYVPFGGGPRMCLGQEFARLEILVFMHNIVKRFKWDLVIPDEKFKYDPLLEPVKGLAIRLHPSHF*

>Glyma08g13170.2   sequence type=predicted peptide   gene model=Glyma08g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVTNLVVLPAVSAFFVLSLHFITKADRLRKHPNLNLPPGRLGCPIVGETLEFLRTMNEGNVLRFIQERVEKYDARVFKTSMFGDPVVVFCGPAGNKFLFSNENKNVQVWWPSSVRKLLRLSLVNKVGDEAKMVRRLLMSFLNAETLRNYLPKMDSIAQRHIDTYWEGIIGLPLNIPGTRFHRAMKAADVIRNEIEMILKKRKVDLEEKRASPTQDLLSHMLVTSDPNGRFMTEMEIIDNILLLLFAGHDSSRSVLSLVMKYLGQLPQVYEHVLKEQLEISQGKEAGQLLQWEDVQKMKYSWNVASEVMRLSPPVSGAYREAIKDFTYGDYNIPKGWKLHWNTGSSHEDPALFSNPETFDASRFEGAGPTPFSYVPFGGGPRMCLGQEFARLEILVFMHNIVKRFKWDLVIPDEKFKYDPLLEPVKGLAIRLHPSHF*

>Glyma08g13170.3   sequence type=predicted peptide   gene model=Glyma08g13170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSIAQRHIDTYWEGKEQVLVYPIVQLYTFELACCLFLSIEDSDHISKLSLKFDEFLKGIIGLPLNIPGTRFHRAMKAADVIRNEIEMILKKRKVDLEEKRASPTQDLLSHMLVTSDPNGRFMTEMEIIDNILLLLFAGHDSSRSVLSLVMKYLGQLPQVYEHVLKEQLEISQGKEAGQLLQWEDVQKMKYSWNVASEVMRLSPPVSGAYREAIKDFTYGDYNIPKGWKLHWNTGSSHEDPALFSNPETFDASRFEGAGPTPFSYVPFGGGPRMCLGQEFARLEILVFMHNIVKRFKWDLVIPDEKFKYDPLLEPVKGLAIRLHPSHF*

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