SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G13460 | AT | Annotation by Michelle Graham. TAIR10: evolutionarily conserved C-terminal region 2 | chr3:4385274-4388220 REVERSE LENGTH=667 | SoyBase | E_val: 0 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1901 | KOG | Uncharacterized high-glucose-regulated protein | JGI | ISS | |
| PTHR12357 | Panther | YTH (YT521-B HOMOLOGY) DOMAIN-CONTAINING | JGI | ISS | |
| PTHR12357:SF6 | Panther | YTH DOMAIN-CONTAINING | JGI | ISS | |
| PF04146 | PFAM | YT521-B-like family | JGI | ISS | |
| UniRef100_G7L842 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: YTH domain family protein n=1 Tax=Medicago truncatula RepID=G7L842_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KSN3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSN3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g13130 not represented in the dataset |
Glyma08g13130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g30020 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g124600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g13130.2 sequence type=transcript gene model=Glyma08g13130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGGTGAATGAGATCACGGAGTGACCTGCGGGTGAGAGAGTGAGAGTGCAGAAAGAGAGCGTGTGGTGGTGCTATTTGAATCACTGCTTTTGGAGGAACAAAACCCTCTCTCCCGAAAAGCCCAAACCCTTGGCGGCTGCGAGACCCGTTGTGTTCTCTCTTCTCTCTCTTTTTTTTCTCTTTCCCTCTCTTCTTCGCCGCTCTTTTTAGGGTTTTCTCAACTCTTCGATTTGGGGCTTAAACCCTCGCTTCCGATTCAGATTCGGATTTAGGGCTTCCGTTTCTCGATTCTGCCTCCCAAGAAAAACCAGATCTCGTGATTGATTATTCATCATGGCCACTGTTGCTAGTCCCGCGGATCAAGCAACTGATTTGCTGCAGAAGCTATCGTTGGAAACTCAGCCCAAGCCCTTGGAGATTCCTGAGCCAACCAAGAAGGCCACTGGGAATCAGTATGGATCAGTTGATTCAGGAAATGCTGCGAATGGCCAGATCCCATCGTATGATCGGTCTGTAACCCCAGTGTTGCAGGATTTTATTGATCCTACTATGTGTTACCTCCCAAATGGTTACCCATCCACTGCCTATTATTATGGTGGTTATGATGGAACTGGTAACGAGTGGGATGATTATTCTAGATATGTGAATTCGGAAGGAGTTGAGATGACTTCGGGAGTTTATGGGGATAATGGGTCTCTACTTTATCACCATGGATATGGATATGCACCCTATGGCCCCTATTCGCCAGCAGGGTCTCCAGTTCCAACCATGGGGAATGATGGTCAGTTGTATGGGCCTCAACACTATCAGTACCCTCCATATTTTCAACCGCTAACACCAACCAGTGCACCATTCACACCTACTCCTGCTGTCCTTCCTCAGGGTGAGGTTTCCACCTCTGTTGCTGCTGATCAAAAGCCTCTTCCTGTTGAAGCAGCCAATGGAAATTCTAATGGTGTCTCAAATGGTGGCAATGCAAAAGGTCGTGGTCCAACCTCAGGTTATCAGGATCCAAGATTTGGTTATGATGGAGTTCGCTCACCTATCCCCTGGCTAGATGCCCCACTATTTTCAGATGGGCAACCAAGGCCTGTAAGTAGCACAACCATCACTTCTTCGATATCAGGTGGCAACAACACTGCCTCAAGGAGCCAGACTTTCCGCCCTAATTCTCAGTTCATGGGCTTGCACCACCCAAGACCAATGCCTGCCATGGGAGCCACCCATAGCTTCATAAATAGGATGTACCCCAACAAATTATATGGTCAATATGGGAACACTGTCAGATCTGGAATGGGTTATGGTACACATGGGTATGATTCTCGGGCTAATGGGCGGGCTTGGTTGGCTGTTGACAGCAAATACAAAACTAGGGGAAGAAGTGGTGGCTATTTTGGCTATGGAAATGAGAATGTAGATGGCTTGAATGAACTGAACAGAGGCCCTAGGGCCAAGGGTGGCAAAAACCAAAAAGGTTTTGCACCAACTATTTTGGCAGTCAAAGGGCAGAACTTGCCTGCAAGTTTAGGCACCGATGAAGAGAAAGACAAGACTAGTACCGTTCCGGACCGTGATCAGTATAACAAAGCTGATTTTCCAGAAGAATATACTGATGCTAAATTTTTTGTCATCAAGTCTTACAGTGAGGATGATATCCATAAGAGTATTAAGTATAACGTGTGGGCCAGTACCCAAAATGGCAACAAGAAGCTTGATGCTGCATATCATGAGGCACAGCAGAAACCTGGTGGCTGCCCTGTTTTTCTCTTTTTCTCAGTTAATACCAGTGGGCAATTTGTGGGGCTTGCTGAAATGATTGGTCCTGTTGATTTTAACAAGAGTGTTGAGTATTGGCAGCAAGACAAGTGGAATGGCTGCTTTCCTCTTAAGTGGCACGTTGTTAAGGATGTTCCTAACAATTTGTTGAGGCACATTACCCTGGATAACAATGAGAACAAACCTGTCACTAACAGTAGGGATACACAAGAGGTAATGTTGGAGCCTGGCCTGAAATTAATCAAAATTTTCAAGGAATATACCAGCAAGACATGCATTCTGGATGATTTTGGCTTCTATGAGGCCCGTCAGAAGACTATTTTGGAGAAGAAAGCAAAGCAACAATTCCCAAAGCAGGTATGGGAAGGGAAACCTGCTGATGAGAAGATTGAGATAAATGGGGAAGTCAATACTCAAAAATCTGAAGTTAGCTCGGAAGTGCTCAAGGAGTCCCTTGCTGAGAAGGATAGTGATGACCACAAAGTTCCCGAGAATGGATGTGCTACAAAAACTGGAGATGCCCCAAAGGGTGCTAAACCAGTTGTTCCTGAGAGCAAGATTGTAGCCAATGGGGTTGTTTCTAATGGTTGCTAAGCTCTACTGTGTTTGAAGGAGGCGGTCCTATCCATTTCAGTGGCATATATTGGTTCTTAGAAGTATTTTATCAGAAACTTGGTACCGCCTGATTTTATCTTTCTTGCCTCTTCTCTTGCAGTCTGAAGATAGAGATTGGTTGCCTAGTGAAGATAAAGATCTGTATATTGAGATTGGCTGGGCGGAGTTACTTCATAGAATGCTAGCACCAATCCCTTCTCATTGGGTTTTGTTTACAGTGGTTAGCTCCTAACAGGCTTTACTCCTAGGGTTTTTTGGGTTTTAGGGTTTCTGCCTAAGATGCTTATATCTTTTGGTTTTTGTTCGGGTTTATCCTTCTCTTTGCCTTTTTTCTTTTTTCTTTCTTTTATTTTACTTTGTTGGTCGTTTCCTGTCTTGTAAATTTAGATCTACTTTGTTGCAGAGCAGCTTTACTTTGTTACTTTCAACAGGGGTAGAAGCAAGGTGGGAAATACTGAAAAATATAGTTGGATTTTAAGTTTGAGTTTTTCGTCTTAATTTAGTCTTCTGTTTATTTTCTATCTGTTGATTGACTTGGGCATAGTGGAAAAAGAATTATATTTGTGGACAATCTGTTATGTAATAGGGGTGTTTTTCTGGCTATGAAGCTCACCATATTGTTTAGTTAAATTAGTCCTTCCTGTTCTTATTAGATATTTTTCACCGTTAATTTTAGCTAGTATGATCTAGTTCCTTAGTTAAATTAACAGC
>Glyma08g13130.1 sequence type=CDS gene model=Glyma08g13130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACTGTTGCTAGTCCCGCGGATCAAGCAACTGATTTGCTGCAGAAGCTATCGTTGGAAACTCAGCCCAAGCCCTTGGAGATTCCTGAGCCAACCAAGAAGGCCACTGGGAATCAGTATGGATCAGTTGATTCAGGAAATGCTGCGAATGGCCAGATCCCATCGTATGATCGGTCTGTAACCCCAGTGTTGCAGGATTTTATTGATCCTACTATGTGTTACCTCCCAAATGGTTACCCATCCACTGCCTATTATTATGGTGGTTATGATGGAACTGGTAACGAGTGGGATGATTATTCTAGATATGTGAATTCGGAAGGAGTTGAGATGACTTCGGGAGTTTATGGGGATAATGGGTCTCTACTTTATCACCATGGATATGGATATGCACCCTATGGCCCCTATTCGCCAGCAGGGTCTCCAGTTCCAACCATGGGGAATGATGGTCAGTTGTATGGGCCTCAACACTATCAGTACCCTCCATATTTTCAACCGCTAACACCAACCAGTGCACCATTCACACCTACTCCTGCTGTCCTTCCTCAGGGTGAGGTTTCCACCTCTGTTGCTGCTGATCAAAAGCCTCTTCCTGTTGAAGCAGCCAATGGAAATTCTAATGGTGTCTCAAATGGTGGCAATGCAAAAGGTAATAACGCTGCTGCTCCTATTAAACAGGCCAATCAGAATTCATCTTTTAGTTCCAAAGCATCAAATGAAAGGGTTGCTATGCCAGGTCGTGGTCCAACCTCAGGTTATCAGGATCCAAGATTTGGTTATGATGGAGTTCGCTCACCTATCCCCTGGCTAGATGCCCCACTATTTTCAGATGGGCAACCAAGGCCTGTAAGTAGCACAACCATCACTTCTTCGATATCAGGTGGCAACAACACTGCCTCAAGGAGCCAGACTTTCCGCCCTAATTCTCAGTTCATGGGCTTGCACCACCCAAGACCAATGCCTGCCATGGGAGCCACCCATAGCTTCATAAATAGGATGTACCCCAACAAATTATATGGTCAATATGGGAACACTGTCAGATCTGGAATGGGTTATGGTACACATGGGTATGATTCTCGGGCTAATGGGCGGGCTTGGTTGGCTGTTGACAGCAAATACAAAACTAGGGGAAGAAGTGGTGGCTATTTTGGCTATGGAAATGAGAATGTAGATGGCTTGAATGAACTGAACAGAGGCCCTAGGGCCAAGGGTGGCAAAAACCAAAAAGGTTTTGCACCAACTATTTTGGCAGTCAAAGGGCAGAACTTGCCTGCAAGTTTAGGCACCGATGAAGAGAAAGACAAGACTAGTACCGTTCCGGACCGTGATCAGTATAACAAAGCTGATTTTCCAGAAGAATATACTGATGCTAAATTTTTTGTCATCAAGTCTTACAGTGAGGATGATATCCATAAGAGTATTAAGTATAACGTGTGGGCCAGTACCCAAAATGGCAACAAGAAGCTTGATGCTGCATATCATGAGGCACAGCAGAAACCTGGTGGCTGCCCTGTTTTTCTCTTTTTCTCAGTTAATACCAGTGGGCAATTTGTGGGGCTTGCTGAAATGATTGGTCCTGTTGATTTTAACAAGAGTGTTGAGTATTGGCAGCAAGACAAGTGGAATGGCTGCTTTCCTCTTAAGTGGCACGTTGTTAAGGATGTTCCTAACAATTTGTTGAGGCACATTACCCTGGATAACAATGAGAACAAACCTGTCACTAACAGTAGGGATACACAAGAGGTAATGTTGGAGCCTGGCCTGAAATTAATCAAAATTTTCAAGGAATATACCAGCAAGACATGCATTCTGGATGATTTTGGCTTCTATGAGGCCCGTCAGAAGACTATTTTGGAGAAGAAAGCAAAGCAACAATTCCCAAAGCAGGTATGGGAAGGGAAACCTGCTGATGAGAAGATTGAGATAAATGGGGAAGTCAATACTCAAAAATCTGAAGTTAGCTCGGAAGTGCTCAAGGAGTCCCTTGCTGAGAAGGATAGTGATGACCACAAAGTTCCCGAGAATGGATGTGCTACAAAAACTGGAGATGCCCCAAAGGGTGCTAAACCAGTTGTTCCTGAGAGCAAGATTGTAGCCAATGGGGTTGTTTCTAATGGTTGCTAA >Glyma08g13130.2 sequence type=CDS gene model=Glyma08g13130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACTGTTGCTAGTCCCGCGGATCAAGCAACTGATTTGCTGCAGAAGCTATCGTTGGAAACTCAGCCCAAGCCCTTGGAGATTCCTGAGCCAACCAAGAAGGCCACTGGGAATCAGTATGGATCAGTTGATTCAGGAAATGCTGCGAATGGCCAGATCCCATCGTATGATCGGTCTGTAACCCCAGTGTTGCAGGATTTTATTGATCCTACTATGTGTTACCTCCCAAATGGTTACCCATCCACTGCCTATTATTATGGTGGTTATGATGGAACTGGTAACGAGTGGGATGATTATTCTAGATATGTGAATTCGGAAGGAGTTGAGATGACTTCGGGAGTTTATGGGGATAATGGGTCTCTACTTTATCACCATGGATATGGATATGCACCCTATGGCCCCTATTCGCCAGCAGGGTCTCCAGTTCCAACCATGGGGAATGATGGTCAGTTGTATGGGCCTCAACACTATCAGTACCCTCCATATTTTCAACCGCTAACACCAACCAGTGCACCATTCACACCTACTCCTGCTGTCCTTCCTCAGGGTGAGGTTTCCACCTCTGTTGCTGCTGATCAAAAGCCTCTTCCTGTTGAAGCAGCCAATGGAAATTCTAATGGTGTCTCAAATGGTGGCAATGCAAAAGGTCGTGGTCCAACCTCAGGTTATCAGGATCCAAGATTTGGTTATGATGGAGTTCGCTCACCTATCCCCTGGCTAGATGCCCCACTATTTTCAGATGGGCAACCAAGGCCTGTAAGTAGCACAACCATCACTTCTTCGATATCAGGTGGCAACAACACTGCCTCAAGGAGCCAGACTTTCCGCCCTAATTCTCAGTTCATGGGCTTGCACCACCCAAGACCAATGCCTGCCATGGGAGCCACCCATAGCTTCATAAATAGGATGTACCCCAACAAATTATATGGTCAATATGGGAACACTGTCAGATCTGGAATGGGTTATGGTACACATGGGTATGATTCTCGGGCTAATGGGCGGGCTTGGTTGGCTGTTGACAGCAAATACAAAACTAGGGGAAGAAGTGGTGGCTATTTTGGCTATGGAAATGAGAATGTAGATGGCTTGAATGAACTGAACAGAGGCCCTAGGGCCAAGGGTGGCAAAAACCAAAAAGGTTTTGCACCAACTATTTTGGCAGTCAAAGGGCAGAACTTGCCTGCAAGTTTAGGCACCGATGAAGAGAAAGACAAGACTAGTACCGTTCCGGACCGTGATCAGTATAACAAAGCTGATTTTCCAGAAGAATATACTGATGCTAAATTTTTTGTCATCAAGTCTTACAGTGAGGATGATATCCATAAGAGTATTAAGTATAACGTGTGGGCCAGTACCCAAAATGGCAACAAGAAGCTTGATGCTGCATATCATGAGGCACAGCAGAAACCTGGTGGCTGCCCTGTTTTTCTCTTTTTCTCAGTTAATACCAGTGGGCAATTTGTGGGGCTTGCTGAAATGATTGGTCCTGTTGATTTTAACAAGAGTGTTGAGTATTGGCAGCAAGACAAGTGGAATGGCTGCTTTCCTCTTAAGTGGCACGTTGTTAAGGATGTTCCTAACAATTTGTTGAGGCACATTACCCTGGATAACAATGAGAACAAACCTGTCACTAACAGTAGGGATACACAAGAGGTAATGTTGGAGCCTGGCCTGAAATTAATCAAAATTTTCAAGGAATATACCAGCAAGACATGCATTCTGGATGATTTTGGCTTCTATGAGGCCCGTCAGAAGACTATTTTGGAGAAGAAAGCAAAGCAACAATTCCCAAAGCAGGTATGGGAAGGGAAACCTGCTGATGAGAAGATTGAGATAAATGGGGAAGTCAATACTCAAAAATCTGAAGTTAGCTCGGAAGTGCTCAAGGAGTCCCTTGCTGAGAAGGATAGTGATGACCACAAAGTTCCCGAGAATGGATGTGCTACAAAAACTGGAGATGCCCCAAAGGGTGCTAAACCAGTTGTTCCTGAGAGCAAGATTGTAGCCAATGGGGTTGTTTCTAATGGTTGCTAA
>Glyma08g13130.1 sequence type=predicted peptide gene model=Glyma08g13130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATVASPADQATDLLQKLSLETQPKPLEIPEPTKKATGNQYGSVDSGNAANGQIPSYDRSVTPVLQDFIDPTMCYLPNGYPSTAYYYGGYDGTGNEWDDYSRYVNSEGVEMTSGVYGDNGSLLYHHGYGYAPYGPYSPAGSPVPTMGNDGQLYGPQHYQYPPYFQPLTPTSAPFTPTPAVLPQGEVSTSVAADQKPLPVEAANGNSNGVSNGGNAKGNNAAAPIKQANQNSSFSSKASNERVAMPGRGPTSGYQDPRFGYDGVRSPIPWLDAPLFSDGQPRPVSSTTITSSISGGNNTASRSQTFRPNSQFMGLHHPRPMPAMGATHSFINRMYPNKLYGQYGNTVRSGMGYGTHGYDSRANGRAWLAVDSKYKTRGRSGGYFGYGNENVDGLNELNRGPRAKGGKNQKGFAPTILAVKGQNLPASLGTDEEKDKTSTVPDRDQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKYNVWASTQNGNKKLDAAYHEAQQKPGGCPVFLFFSVNTSGQFVGLAEMIGPVDFNKSVEYWQQDKWNGCFPLKWHVVKDVPNNLLRHITLDNNENKPVTNSRDTQEVMLEPGLKLIKIFKEYTSKTCILDDFGFYEARQKTILEKKAKQQFPKQVWEGKPADEKIEINGEVNTQKSEVSSEVLKESLAEKDSDDHKVPENGCATKTGDAPKGAKPVVPESKIVANGVVSNGC* >Glyma08g13130.2 sequence type=predicted peptide gene model=Glyma08g13130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATVASPADQATDLLQKLSLETQPKPLEIPEPTKKATGNQYGSVDSGNAANGQIPSYDRSVTPVLQDFIDPTMCYLPNGYPSTAYYYGGYDGTGNEWDDYSRYVNSEGVEMTSGVYGDNGSLLYHHGYGYAPYGPYSPAGSPVPTMGNDGQLYGPQHYQYPPYFQPLTPTSAPFTPTPAVLPQGEVSTSVAADQKPLPVEAANGNSNGVSNGGNAKGRGPTSGYQDPRFGYDGVRSPIPWLDAPLFSDGQPRPVSSTTITSSISGGNNTASRSQTFRPNSQFMGLHHPRPMPAMGATHSFINRMYPNKLYGQYGNTVRSGMGYGTHGYDSRANGRAWLAVDSKYKTRGRSGGYFGYGNENVDGLNELNRGPRAKGGKNQKGFAPTILAVKGQNLPASLGTDEEKDKTSTVPDRDQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKYNVWASTQNGNKKLDAAYHEAQQKPGGCPVFLFFSVNTSGQFVGLAEMIGPVDFNKSVEYWQQDKWNGCFPLKWHVVKDVPNNLLRHITLDNNENKPVTNSRDTQEVMLEPGLKLIKIFKEYTSKTCILDDFGFYEARQKTILEKKAKQQFPKQVWEGKPADEKIEINGEVNTQKSEVSSEVLKESLAEKDSDDHKVPENGCATKTGDAPKGAKPVVPESKIVANGVVSNGC*
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