Glyma08g13100 - SoyBase

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Report for Sequence Feature Glyma08g13100

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9550597
stop:	9554460
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02510	AT	Annotation by Michelle Graham. TAIR10: translocon at the outer envelope membrane of chloroplasts 159 \| chr4:1104766-1109360 FORWARD LENGTH=1503	SoyBase	E_val: 0	ISS
GO:0045036	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009707	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0004888	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane signaling receptor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0016817	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides	SoyBase	N/A	ISS
PTHR10903	Panther	AIG1	JGI		ISS
PTHR10903:SF24	Panther	OS03G0835100 PROTEIN	JGI		ISS
PF04548	PFAM	AIG1 family	JGI		ISS
PF11886	PFAM	Domain of unknown function (DUF3406)	JGI		ISS
UniRef100_Q9LKR1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast protein import component Toc159 n=2 Tax=Pisum sativum RepID=Q9LKR1_PEA	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338433	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338433 related cluster n=1 Tax=unknown RepID=UPI0002338433	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13100

Paralog	Evidence	Comments
Glyma05g29990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g124300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g13100

Limit To All Plant Sequences

>Glyma08g13100.1   sequence type=CDS   gene model=Glyma08g13100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTTCTTCTCTTCCCCAAACCTCTCTTCCTCCCGCTTCCGACTCTGAGAACGATGATGGCTTCTTAAGCGGTGAAGAGTCCGATTTCGAGCCCGAGCCCACCAGGCCCGTTCTCGTCAACTCTTCTTCTCAGCCCCCTCATGAGCCCGTCTTCGATTCTCCTCCCCACAGACCCATTGCGAAGGTGTCCGGGGACGATGATGATGATGATGATGACGGTTCCATTGTTGAGGACGCGGACGACGACGTCGTTTTGGAGGAAGGCGGTGAGAAAGAGGAATCGGGTGAGGCGGTGAAGGATGGGGAAGTTAGCGATAGTAACGAGGTCTTTGTGGAGGCCTCTGGCGGTGATGATGTTGCTGTTGAGAATGGAGTCGAATTCAGTGGCGCTGATAAAGGGTTTGAGGGTGCTGCTGTTGAATTGAATGAGAAAGAGGACAAAGTTAATGACGGTGGGACCGATAATTCGGATTCTGAAGTTGTGGTGGACGAGAAGAAGGGTGAGGGTGTTGATGTTGAAAAGGATGATGATGGTGGTGGTGGTGTGGGTGTGGATGGTGCTGTTGATAACGTCGAGGAATCTCAGATTAAAGGGCTAGACGAGACCGCGATGAATCTGGAGAATGATTTTGAGCCCATTGAGAAGGGTGAGGAGGAGGTTGTTGATGGGGGTGATGAGTCTGCCGTTGGCCCTGTACATGACGGTCAATCGGGTACTGAAGGTGTTGGTGTTGGTGAGAATGGAGTTGAAGGGGATGGGTTGAAGAGTGACATTGATGTTCCTCCTGAGGAAGGTGGTGGAGGTTCGGAGTTTGTTGAGAAAAATGAAGTAAAGATGGAGGGTGATGTTGGTCAACATGGTGACAGGGAGATTGATGATTCGGTGTTGGATGGGGAAATTGGGAGCCATGTGGAGGAGATTGGTGGCAATGGTGAGAGGGAGATTAATGGTTCGGTGTCGGATGAGAAGGGTGATGGACTGGTGTTTGGAAGCACTGAGGCTGCCAATAAGTTCCTGGAGGATTTGGAATTACATCAATCGCGTGATGCTGAGAGGATTGTTACTGACTCGGACGAAGAAGAGGAGTCTGACGATGAAGGAGAAGGCAAGGAGCTGTTTGATACTGCTACATTGGCAGCTCTTTTGAAAGCGGCATCGGGTGCGGACCAAGATGGCGGCAGCATCACAATAACCTCTCAAGATGGGTCCAGGCTTTTCTCTGTTGAGCGCCCTGCTGGCTTGGGATCACCGCTCCAGTCAGGTAAACCTGCCGTGAGGCAAACTCGTCCGAGTCTTTTTACTCCTTCCATGAGTAGACCTAGTGCCATTTCTGATAGCAATTTGAGCCAAGAGGAGAAAAATAAACTGGAGAAATTGCATGAAATTAGGGTCAAATACTTGAGACTAGTTCATAGGCTGGGTTTTACTACAGAAGAATCAATAGCAGCACAGGTGCTGTATCGGATGACACTTGTTGCAGGCAGGCAAAGTGGTCAAATGTTTAGCGTAGAGTCTGCAAAGGAGACTGCTTCGCGTCTTGAAGCTGAGGGAAGAGATGATTTTGATTTTTCTGTAAATATTCTGGTTCTTGGGAAAGCAGGTGTGGGCAAGAGTGCTACAATAAATTCAATTTTCGGCGAGACAAAGACCAGCATTAATGCTTGTGGTCCTGCTACTACTTCTGTGAAAGAAATTGTTGGGGTGGTTGATGGAGTGAAGTTAAGGATTTTTGACACACCAGGCCTCAAATCTTCTGCATTGGAACAAAATTTCAATATGAAAGTCCTGTCTGCGGTGAAGAAATTGACTAAAAAATCTCCCCCTGATATTGTCCTCTATGTGGATCGCCTGGACCTGCAAACTAGAGATATGAATGACCTGCCTATGTTAAGATCAATTACTAGTGTCCTGGGTTCATCAATATGGCGAAATGTCATAGTCACTCTGACCCATGCTGCCTCTGCTCCTCCAGACGGGCCATCAGGTGCCCCATTGAGTTATGAAGTATTTGTTGCTCAAAGATCTCATACAGTTCAACAAACCATTGGACAAGCTGTTGGGGACCTACGTCTTATGAATCCGAGCTTAATGAATCCAGTTTCTCTTGTTGAAAACCATCCTTCTTGTCGAAAAAATAGAGATGGCCAGAAGGTGCTTCCTAATGGTCAAAGTTGGAGACCTCTCTTGTTGCTCTTATGCTTCTCAATGAAGATTCTCTCTGATGCTAGTAACTCTACAAAAACTCAAGAATCATTTGACCACCGCAGGCTGTTTGGTTTTCGTCCCCGCTCCCCACCACTTCCATACTTGTTATCTTCGTTATTGCAGACACATACATACCCAAAACTCCCTGCAGATCAAAGTGGGCCTGACAATGGTGATTCTGATGTTGAAATGGCTGATTTATCTGATTCTGATCTAGATGAAGATGAGGATGAGTATGACCAGCTCCCACCATTTAAGCCTATGAAGAAATCTCAGGTTGCTAAGCTTACTAAAGAACAGCAGAAAGCATATTTTGATGAGTACGATTATCGGGTGAAACTTCTACAGAAAAAGCAATGGAGAGAGGAGTTGAGAAGGATGAGAGAGATGAAGAAAAAAGGTAACACAAAAGAAAATGACTATGGTTACATGGAAGAAGATGATCAAGAGAATGGAAGTCCAGCAGCAGTGCCAGTTCCATTGCCTGATATGGCCATGCCACCATCCTTTGACAGTGACAATCCAGCCTATAGATACCGTTTCTTAGAGCCAACTTCACAACTCCTGACAAGGCCAGTCTTAGACAACCATGGATGGGATCACGATTGTGGTTATGATGGTGTAAACATTGAACAGAGTCTAGCTATCATCAATAAATTCCCAGCAGCTGTCACTGTTCACGTAACAAAGGATAAGAAAGACTTCACCATCCAGTTGGATTCCTCAGTTGCTGCAAAACTTGGAGAGAATGGATCAGCCATGGCAGGCTTTGACATTCAAAGCGTTGGAAAGCAGCTATCTTACAGTGTTAGAGGAGAGACAAAATTGAAAAATTTCAAAAGAAATAAAACTTCTGCTGGGGTGTCTGTGACATATTTGGGTGAAAATGTGTGTACTGGGCTGAAAGTTGAGGATCAGATTGCTGTGGGGAAACGCTTGGTATTAGTGGGTAGCACAGGGGTTGTGAAGTCTAAAACTGATTCTGCTTATGGTGCCAACGTTGAAGTGAGGCTTAGAGAGGCAGATTTTCCAATTGGCCAGGACCAGTCTTCACTGAGCCTTTCTCTTGTGAAGTGGAGGGGAGACCTTGCTTTAGGGGCCAATCTTCAGTCCCAAATTTCTGTTGGACGAGGTTATAAGGTGGCTGTTCGTGCTGGATTGAACAACAAGCTCAGTGGACAGATCACTGTGAGAACAAGTAGCTCAGACCAGCTTCAGATTGCCCTTGTTGCTATCCTTCCGATTGCCAAGGCTATCTACAAAAACTTCTGGCCTGGGGCTAGTGAGAATTATTCTATCTACTAG

Predicted protein sequences of Glyma08g13100

Limit To All Plant Sequences

>Glyma08g13100.1   sequence type=predicted peptide   gene model=Glyma08g13100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSSSLPQTSLPPASDSENDDGFLSGEESDFEPEPTRPVLVNSSSQPPHEPVFDSPPHRPIAKVSGDDDDDDDDGSIVEDADDDVVLEEGGEKEESGEAVKDGEVSDSNEVFVEASGGDDVAVENGVEFSGADKGFEGAAVELNEKEDKVNDGGTDNSDSEVVVDEKKGEGVDVEKDDDGGGGVGVDGAVDNVEESQIKGLDETAMNLENDFEPIEKGEEEVVDGGDESAVGPVHDGQSGTEGVGVGENGVEGDGLKSDIDVPPEEGGGGSEFVEKNEVKMEGDVGQHGDREIDDSVLDGEIGSHVEEIGGNGEREINGSVSDEKGDGLVFGSTEAANKFLEDLELHQSRDAERIVTDSDEEEESDDEGEGKELFDTATLAALLKAASGADQDGGSITITSQDGSRLFSVERPAGLGSPLQSGKPAVRQTRPSLFTPSMSRPSAISDSNLSQEEKNKLEKLHEIRVKYLRLVHRLGFTTEESIAAQVLYRMTLVAGRQSGQMFSVESAKETASRLEAEGRDDFDFSVNILVLGKAGVGKSATINSIFGETKTSINACGPATTSVKEIVGVVDGVKLRIFDTPGLKSSALEQNFNMKVLSAVKKLTKKSPPDIVLYVDRLDLQTRDMNDLPMLRSITSVLGSSIWRNVIVTLTHAASAPPDGPSGAPLSYEVFVAQRSHTVQQTIGQAVGDLRLMNPSLMNPVSLVENHPSCRKNRDGQKVLPNGQSWRPLLLLLCFSMKILSDASNSTKTQESFDHRRLFGFRPRSPPLPYLLSSLLQTHTYPKLPADQSGPDNGDSDVEMADLSDSDLDEDEDEYDQLPPFKPMKKSQVAKLTKEQQKAYFDEYDYRVKLLQKKQWREELRRMREMKKKGNTKENDYGYMEEDDQENGSPAAVPVPLPDMAMPPSFDSDNPAYRYRFLEPTSQLLTRPVLDNHGWDHDCGYDGVNIEQSLAIINKFPAAVTVHVTKDKKDFTIQLDSSVAAKLGENGSAMAGFDIQSVGKQLSYSVRGETKLKNFKRNKTSAGVSVTYLGENVCTGLKVEDQIAVGKRLVLVGSTGVVKSKTDSAYGANVEVRLREADFPIGQDQSSLSLSLVKWRGDLALGANLQSQISVGRGYKVAVRAGLNNKLSGQITVRTSSSDQLQIALVAILPIAKAIYKNFWPGASENYSIY*

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