Glyma08g13070 - SoyBase

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Report for Sequence Feature Glyma08g13070

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9527302
stop:	9533116
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21160	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent ARF-type GTPase activating protein family \| chr4:11284694-11286532 FORWARD LENGTH=337	SoyBase	E_val: 1.00E-180	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006605	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016197	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosomal transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1030	KOG	Predicted Ca2+-dependent phospholipid-binding protein	JGI		ISS
PTHR23180	Panther	CENTAURIN/ARF	JGI		ISS
PTHR23180:SF24	Panther	CENTAURIN/ARF-RELATED	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF01412	PFAM	Putative GTPase activating protein for Arf	JGI		ISS
UniRef100_G7L835	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein AGD12 n=1 Tax=Medicago truncatula RepID=G7L835_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KSM5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KSM5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g13070 not represented in the dataset	Glyma08g13070 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g13070

Paralog	Evidence	Comments
Glyma05g29940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g13070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g124000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g13070

Limit To All Plant Sequences

>Glyma08g13070.3   sequence type=transcript   gene model=Glyma08g13070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGGATTTCAAACTCGACTCGTGCAATTCATTCATTCACCCGTAGTTTAGCTTGGCTGCTATTACTGGAGTTGCAGTTTTGAACGATAGCTGGCTTCAAGGGTGGCAATGAATAATCAACGGTTGGAATTTGGGAGGCCTGTCTCAAGTAAAAGAAGATTGCAGGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTCGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCAGATATCAAAGGTTTTATCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATTTACAAAACCTGGACCAGATGCCACTCATGATCAGCGTGTGAAATTCATCCGGTTAAAGTATGAGCATCAAGAATTTTTGCAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCAACCCCCCAAAAAGTATATCCAAAGGGATTATGGATAGTTTTCGAATTACAAGTGATTCACAGCATATGGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTGAATGTATTTGATTATGACTTGTTTTCGGCTGATGACATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATAACATCCGCAATCGCATACGGTGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCAATGGCAATGCGCTTATAGATGATAGCATAGTTAATATAGTTGATGGTAAGGTTAAACAAGTCATATCACTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATGCCTCTTGATTATTAGAATTAAATGAAGCATTCTTGGATTGAATGGGGAAACAGTAATTCCAAATCAATAACTGCACGGCACGTCAGAAAAAAAAAAAAAAACACTGCATGAAATTTTGGGACGGCAGCATCTCATATGTTGCTGAGCTATATTCTAGATATGAAAGCATATATTCCTTAAGTTTTGCACCAAATTGGGGTGGCATGTTGTGAAGAGCACTAAACGAATTTACGGTAGAAGATATAGTTGCAAGTTGCAAGTTGCAATGTCTTTAATAAAATATGTTTGGAGATTGAGTGGACAGTAAGATTTTTTTGGTGGTAGCAAGATGATACAAGTCAAGAAAGATTTGAAGAGTATTACTTTAAACTTTCATTCAAATCGTTGCAAAATTGATGATCTTAGGTTTCATG

Coding sequences of Glyma08g13070

Limit To All Plant Sequences

>Glyma08g13070.2   sequence type=CDS   gene model=Glyma08g13070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAATCAACGGTTGGAATTTGGGAGGCCTGTCTCAAGTAAAAGAAGATTGCAGGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTCGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCAGATATCAAAGGTTTTATCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATTTACAAAACCTGGACCAGATGCCACTCATGATCAGCGTGTGAAATTCATCCGGTTAAAGTATGAGCATCAAGAATTTTTGCAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCAACCCCCCAAAAAGTATATCCAAAGGGATTATGGATAGTTTTCGAATTACAAGTGATTCACAGCATATGGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTGAATGTATTTGATTATGACTTGTTTTCGGCTGATGACATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATAACATCCGCAATCGCATACGGTGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCAATGGCAATGCGCTTATAGATGATAGCATAGTTAATATAGTTGATGGTAAGGTTAAACAAGTCATATCACTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATGCCTCTTGATTATTAG

>Glyma08g13070.3   sequence type=CDS   gene model=Glyma08g13070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAATCAACGGTTGGAATTTGGGAGGCCTGTCTCAAGTAAAAGAAGATTGCAGGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTCGTATGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGCTCTCAGATATCAAAGGTTTTATCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCAGAAGGATTTACAAAACCTGGACCAGATGCCACTCATGATCAGCGTGTGAAATTCATCCGGTTAAAGTATGAGCATCAAGAATTTTTGCAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCAACCCCCCAAAAAGTATATCCAAAGGGATTATGGATAGTTTTCGAATTACAAGTGATTCACAGCATATGGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTGAATGTATTTGATTATGACTTGTTTTCGGCTGATGACATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATAACATCCGCAATCGCATACGGTGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCAATGGCAATGCGCTTATAGATGATAGCATAGTTAATATAGTTGATGGTAAGGTTAAACAAGTCATATCACTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATGCCTCTTGATTATTAG

Predicted protein sequences of Glyma08g13070

Limit To All Plant Sequences

>Glyma08g13070.2   sequence type=predicted peptide   gene model=Glyma08g13070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNQRLEFGRPVSSKRRLQDLLLQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSQISKVLSVTLDEWSSDEIDAMIEVGGNSSANSIYEAYFPEGFTKPGPDATHDQRVKFIRLKYEHQEFLQPSLRIVSGKSNPPKSISKGIMDSFRITSDSQHMEGMVEFIGMLKVKVIKGTDLAIRDMMTSDPYVILKLGQQTVQTTVIKSNLNPVWNEELMLSVPQQFGILNLNVFDYDLFSADDIMGEADIDLQPLITSAIAYGDARMFDDMQIGKWLKSNGNALIDDSIVNIVDGKVKQVISLKLQNVESGELDLELEWMPLDY*

>Glyma08g13070.3   sequence type=predicted peptide   gene model=Glyma08g13070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNQRLEFGRPVSSKRRLQDLLLQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSQISKVLSVTLDEWSSDEIDAMIEVGGNSSANSIYEAYFPEGFTKPGPDATHDQRVKFIRLKYEHQEFLQPSLRIVSGKSNPPKSISKGIMDSFRITSDSQHMEGMVEFIGMLKVKVIKGTDLAIRDMMTSDPYVILKLGQQTVQTTVIKSNLNPVWNEELMLSVPQQFGILNLNVFDYDLFSADDIMGEADIDLQPLITSAIAYGDARMFDDMQIGKWLKSNGNALIDDSIVNIVDGKVKQVISLKLQNVESGELDLELEWMPLDY*

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