Glyma08g13060 - SoyBase

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Report for Sequence Feature Glyma08g13060

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9517054
stop:	9522010
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20940	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich receptor-like protein kinase family protein \| chr4:11202728-11206038 FORWARD LENGTH=977	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:1901527	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway involved in stomatal movement	SoyBase	N/A	ISS
GO:1901528	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide mediated signaling pathway involved in stomatal movement	SoyBase	N/A	ISS
GO:1901529	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of anion channel activity	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF466	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_B9SB23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SB23_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KSM4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KSM4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g13060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g123800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g13060

Limit To All Plant Sequences

>Glyma08g13060.1   sequence type=CDS   gene model=Glyma08g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTATTTAGCTTTATCCTTTTATTGTTGTCATTACCTTTCTTCTCCGTTATGGCGGAGCTTCCTTCACAGGACATTTTAGCATTGTTGGAATTCAAGAAAGGCATCAAGCATGACCCTACTGGTTATGTCCTTAGTTCCTGGAATGAGGACTCTGTTGATGTTGATGGATGTCCATCTTCATGGAATGGAGTACTGTGTAATGGTAGTGATGTTGCTGGTATTGTACTTGATAACCTTGGTCTCGCCGCTGATGCCAACTTGAGTGTTTTCTCAAACCTCACAAAGCTAGTAAAACTCTCTATGTCCAACAATTCTATCTCAGGAAAACTTCCTGGCAACATTGCTGAATTCAAAAGCCTCGAGTTTCTGGATGTTTCTAATAATCTCTTTTCTTCATCCTTACCGGTGGGAATTGGCAAGTTATCTAGCTTGCAGAATCTTTCATTGGCTGGAAATAACTTCTCTGGCTCAATACCTGACTCTATTTCTGGAATGGCTTCAATCCAATCTTTGGACTTGAGCTGCAATTCATTTTCTGGACCACTGCTAGCATCATTGACTAAGCTGACTAACCTGGTATCATTTAATTTATCTCATAATTGCTTCACTGGAAAAATTCCCAAAGGTTTTGAGCTGATTTTTTCCCTTGAAAAGATTGACTTGCATGGGAATATGCTTGAGGGTCATTTAGATGATGAATTTATACTTTTTTCAAGTGCCAGCTATGTTGATTTTAGTGAGAATATGCTTGTGAGTTCTAATTCTCAGCAGCAGAAGTCTCTGCCACAATTATCTGAAAGTATTAAGTATTTGAATCTAAGCCATAACCGGCTAACTGGATCATTGGTTAGTGGAGGCAAGCAACCAAATTTTGAATACTTGAAGGTGTTAGACCTTAGTTACAATCAATTATCCGGAGAATTGCCTGAATTTGATTTTGTTTATGAACTCATGGTCCTTAAGCTCAGCAACAACAGATTTTCAGGATTTGTTCCCTCTGGTCTTCTTAAAGGAGACTCTTTGGTTTTAACTGAACTGGATTTGAGTGGCAACAATCTCTTAGGGCCAGTAAGTATAATTGCATCAACAACACTGTACTTTCTTAATCTGTCATCAAATGGGTTTACTGGTGAGCTGCCATTGCTTACTGGAAGCTGTGCTGTACTTGATTTGTCAAATAACAAATTAGAAGGAAATTTAACTAGGATGATGAAATGGGGGAATATTGAATTTCTTGATCTCAGTAGGAATCACTTGATAGGATCCATCCCCGAGGTAACTCAGTTTTTTCGATTAAATTATCTAAATCTTTCCCATAACTTTCTTAGCAGCTCCCTTCCAAAAGTCTTAACACAGTATCCAAAGCTTAGAATGCTTGATGTTAGTTCCAACCAGTTAGATGGGAAATTTCTAATTGATCTGGTCACAATGCCCACTTTGCAAGAGCTTCATCTTGGAAATAATACGATTTCTGGTGGCATTAGTTTATCATCCTTTCCTCCTCGTCCTTTCAATCTTCAGATTCTTGAACTTTCTTATAACCATTTTAATGGTTCTTTTCCTGCTGAGTTTGGGTCATTAACAGGCCTGAAAGTGCTCAATATTGCTGGAAATCATTTTTCTGGTTCTCTGCCAACCACAATTGCTAACATGAGTTCCCTAGATTCCTTGGATATATCAGAAAATAATTTTACAGGCCCTTTACCAAATAACATACCAAAGGGGCTAAAAAAATTCAATGCTTCAAACAATGATCTGTCTGGAGTTGTCCCAGAAAACCTTAGGAAGTTCCCTAGTTCTTCTTTCTATCCCGGTAATGATAGGTTGCATTTTCCAAACGACCCTTCTGGATCAACCAATAAATCTGATGAAAGTTCCAATAGGAAGTCTATCAGCTCTATTGTTAAAGTGATCATCATAGTATCATGTGTGGTTGCTGTTCTCTTCATGTTAGTACTGCTCGTTGTCATCATACACTACACTCGAATATCAAGATCTCCATCAGAATATGCTACTGCTAAGGATATGAGAGAGCATGCTCAACCACAAACCACTGGCCCTGGTCACGCAAAAGATTCGATTGGTGCTTTGGTTGTATCAGCCGAGGATTTTGTGACCTCACAGAAAGGTTCGTCATCTGAGATTATCAGCCATGATGAAAAAATGGCAGCTGCAACAAGGTTCTCCCCATCAAAAAATAGCCACTTTTCATCACCAGGATCTAGTGATTCAGTTTCTGTAGGAAATCATGCAAGACTATATGCAAGATCAGCAGATAAATTGACTGGAGAACTTTATTTTCTTGATGATGCAATAACATTGACACATGAGGAGCTGTCTGGAGCCCCAGCTGAAGTTTTGGGGAGAAGCAGTCATGGTACATCTTACAAGGCAACTCTGGAGCATGGTTTGTTATTGAGAGTGAAGTGGCTAAGAGAAGGAATGGCAACAAAGAGAAAAGAATTTACCAAAGAGGCTAAAAAAATTGCAAACATCAGGCATCCCAATGTTGTGGGATTGAAAGGGTACTACTGGGGTCCTACTCAGCATGAGAAGCTTATTATTTCAGATTACATCTCTCCAGGAAGTCTTGCAAGTTTTCTTTACGATCGACCAGGACAAGAAGATCCACCATTGACTTGGGCTCTGAGACTAAAAATAGCAGTTGATATAGCACGTGGGCTGAACTATCTACACTTCGATCGTGCTGTTCCTCACGGCAACCTCAAAGCAACAAATGTGTTGTTAGATACATGTGACTTGCATGCACGTGTAGCTGATTACTGCCTTCACAAGCTTATGACTCAGGCTGGTACATTTGAACAAATGCTTGATGCTGGGGTCTTGGGATATCGCGCCCCAGAGCTTTCTGCTTCCAAGAAGCCAATGCCTTCCTTCAAATCAGATGTTTATGCTTTTGGGATTATACTTTTGGAACTTTTAACTGGAAGGTGTGCTGGTGATGTTGTGTCTGGCGAGAAGGAAGGTGTTGATCTGGCAAATTGGGTAAGGTTGCATGTTGCACAAGGTAGAGGATCAGAATGTTTTGATGATGCACTGGTGCAAGAAATAAGTAATTCAATTGTTGAAAAGGGAATGAATGAGGTTCTTGGAATAGCCATTCGATGCATAAGATCTGTTTCTGATAGGCCAGGTATCAGGACTATATATGAAGATCTTTCGTCTATATAG

Predicted protein sequences of Glyma08g13060

Limit To All Plant Sequences

>Glyma08g13060.1   sequence type=predicted peptide   gene model=Glyma08g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLFSFILLLLSLPFFSVMAELPSQDILALLEFKKGIKHDPTGYVLSSWNEDSVDVDGCPSSWNGVLCNGSDVAGIVLDNLGLAADANLSVFSNLTKLVKLSMSNNSISGKLPGNIAEFKSLEFLDVSNNLFSSSLPVGIGKLSSLQNLSLAGNNFSGSIPDSISGMASIQSLDLSCNSFSGPLLASLTKLTNLVSFNLSHNCFTGKIPKGFELIFSLEKIDLHGNMLEGHLDDEFILFSSASYVDFSENMLVSSNSQQQKSLPQLSESIKYLNLSHNRLTGSLVSGGKQPNFEYLKVLDLSYNQLSGELPEFDFVYELMVLKLSNNRFSGFVPSGLLKGDSLVLTELDLSGNNLLGPVSIIASTTLYFLNLSSNGFTGELPLLTGSCAVLDLSNNKLEGNLTRMMKWGNIEFLDLSRNHLIGSIPEVTQFFRLNYLNLSHNFLSSSLPKVLTQYPKLRMLDVSSNQLDGKFLIDLVTMPTLQELHLGNNTISGGISLSSFPPRPFNLQILELSYNHFNGSFPAEFGSLTGLKVLNIAGNHFSGSLPTTIANMSSLDSLDISENNFTGPLPNNIPKGLKKFNASNNDLSGVVPENLRKFPSSSFYPGNDRLHFPNDPSGSTNKSDESSNRKSISSIVKVIIIVSCVVAVLFMLVLLVVIIHYTRISRSPSEYATAKDMREHAQPQTTGPGHAKDSIGALVVSAEDFVTSQKGSSSEIISHDEKMAAATRFSPSKNSHFSSPGSSDSVSVGNHARLYARSADKLTGELYFLDDAITLTHEELSGAPAEVLGRSSHGTSYKATLEHGLLLRVKWLREGMATKRKEFTKEAKKIANIRHPNVVGLKGYYWGPTQHEKLIISDYISPGSLASFLYDRPGQEDPPLTWALRLKIAVDIARGLNYLHFDRAVPHGNLKATNVLLDTCDLHARVADYCLHKLMTQAGTFEQMLDAGVLGYRAPELSASKKPMPSFKSDVYAFGIILLELLTGRCAGDVVSGEKEGVDLANWVRLHVAQGRGSECFDDALVQEISNSIVEKGMNEVLGIAIRCIRSVSDRPGIRTIYEDLSSI*

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