Glyma08g13050 - SoyBase

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Report for Sequence Feature Glyma08g13050

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9514365
stop:	9516834
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g13050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46460	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr5:18840305-18842398 FORWARD LENGTH=697	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7L833	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7L833_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KSM3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KSM3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g13050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g13050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g123700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g13050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g13050

Limit To All Plant Sequences

>Glyma08g13050.2   sequence type=CDS   gene model=Glyma08g13050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTTGTCAGTCGAGTGCCCAAGTCGAAGTTCTACACGACGCCGTTTACCACGGGCCCCCAAATTCTCGTTGGTATTCGAAACTCAAGAACCTTTTCATTCAACACCGCCACGAACGATTCTACTTCTACTTCCACTTCCACGAATTCTTTCAATATCATCAAATCACACAAGTATCTTCTCTTTCACCACCTCAACAATCGAAGTTTAGATGAAGCTCGCGCCATCTTCGATCAAATCCCTACCCCGCACGTTTCCCTATACACCATAATGCTCCATGCTTACGCACAGAACCACAGACTCCGCGAAGCTATCGACCTCTTTCGTAGAATTCCCTTCAAGGACGTCGTTTCCTGGAACTCCATCATCAAGGGGTGTCTTCATTGCGGCGATATCGTCACCGCCCGAAAGCTGTTCGACGAAATGCCCCGCCGAACCGTCGTGTCGTGGACCACCCTCGTCGACGGGTTACTGCGCTTGGGAATTGTTCAAGAGGCTGAAACCTTGTTCTGGGCAATGGAACCTATGGACAGGGACGTGGCTGCGTGGAATGCAATGATTCATGGGTATTGTAGCAATGGTAGAGTTGATGATGCTTTGCAATTGTTCTGCCAAATGCCTTCGAGGGATGTGATTTCTTGGAGTTCCATGATTGCTGGGCTTGATCACAATGGGAAGAGTGAACAAGCATTGGTTCTTTTTCGTGACATGGTGGCTTCTGGCGTGTGTTTATCTTCTGGTGTCTTGGTTTGCGGGTTGTCTGCTGCTGCTAAGATACCGGCTTGGCGTGTGGGGATTCAAATTCATTGCTCTGTGTTCAAGCTGGGTGACTGGCATTTTGATGAATTTGTTTCTGCTTCGCTTGTCACTTTTTATGCTGGTTGCAAGCAGATGGAAGCTGCGTGCAGAGTTTTTGGTGAGGTGGTTTATAAGAGTGTGGTGATATGGACTGCTCTATTGACAGGGTATGGTTTGAATGATAAGCATAGAGAGGCATTGGAGGTGTTTGGAGAAATGATGAGAATTGATGTGGTTCCGAATGAATCTTCCTTCACCAGTGCTTTGAATTCTTGTTGTGGATTGGAGGATATTGAGAGGGGGAAAGTGATCCATGCTGCAGCGGTTAAGATGGGTTTAGAAAGTGGCGGATATGTGGGAGGTTCTCTTGTTGTCATGTATAGTAAATGTGGTTATGTCAGTGATGCAGTGTATGTATTTAAGGGGATTAATGAGAAAAATGTTGTCTCGTGGAACTCAGTCATTGTTGGTTGTGCACAGCATGGATGTGGCATGTGGGCTCTAGCACTCTTTAACCAAATGTTGCGGGAAGGGGTTGATCCTGATGGAATTACAGTGACTGGTTTGCTTTCTGCTTGTAGTCATTCTGGGATGTTACAGAAAGCAAGGTGCTTCTTCCGATACTTTGGCCAGAAAAGATCAGTTACTCTTACAATTGAGCACTATACAAGCATGGTGGATGTACTTGGACGATGTGGAGAGCTCGAGGAAGCAGAAGCAGTGGTGATGAGCATGCCAATGAAAGCAAATTCAATGGTATGGTTGGCTTTATTGAGTGCATGCAGAAAGCACTCTAATTTAGATTTAGCCAAAAGAGCTGCAAATCAGATATTTGAAATAGAGCCCGATTGTAGTGCTGCATATGTATTGCTGTCAAACTTGTATGCATCTTCGAGCAGATGGGCTGAAGTAGCTTTGATACGGAGAAAAATGAAACATAATGGAGTTGTGAAGAAACCAGGATCCAGTTGGCTAACCTTAAAAGGACAAAAGCACAAATTTCTCTCTGCAGATAGGTCTCATCCTCTTGCTGAGAAAATTTATCAAAAGCTAGAGTGGCTAGGAGTGAAGTTAAAAGAATTAGGTTATGTTCCAGATCAACAATTCGCTTTGCATGATGTTGAAACTGAGCAAAAAGAAGAAATGTTGTCTTACCATAGTGAAAGGCTTGCAATTGCATTTGGGTTGCTTAGCACTGTTGAAGGCAGTGCAATAACAGTAATGAAAAATCTACGTGTATGTGGTGATTGTCATAATGCAATAAAGCTTATGGCAAAGATTGTTGACCGTGAGATTGTAGTACGTGATTCTAGCCGCTTTCATGACTTTAAGAATGGTATATGTTCGTGTGGGGATTATTGGTAG

Predicted protein sequences of Glyma08g13050

Limit To All Plant Sequences

>Glyma08g13050.2   sequence type=predicted peptide   gene model=Glyma08g13050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLVSRVPKSKFYTTPFTTGPQILVGIRNSRTFSFNTATNDSTSTSTSTNSFNIIKSHKYLLFHHLNNRSLDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHCGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKRAANQIFEIEPDCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGSSWLTLKGQKHKFLSADRSHPLAEKIYQKLEWLGVKLKELGYVPDQQFALHDVETEQKEEMLSYHSERLAIAFGLLSTVEGSAITVMKNLRVCGDCHNAIKLMAKIVDREIVVRDSSRFHDFKNGICSCGDYW*

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