SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma08g13040

Feature Type:gene_model
Chromosome:Gm08
Start:9502860
stop:9513798
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G56460AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr5:22865509-22867866 FORWARD LENGTH=408 SoyBaseE_val: 5.00E-167ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF881Panther JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF00931PFAM NB-ARC domain JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_C6ZRP4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Glycine max RepID=C6ZRP4_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1KSM1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KSM1_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g29921 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g123500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g13040.1   sequence type=CDS   gene model=Glyma08g13040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATAGAGGCCTTGCTTCAATCATTACTGGCATCCGGGAAATGGGTTCTCGTTTGAGCAAAGCACGTGGTTCTCTCAAAAATGAATCAGAAGGAACATCCTCGGGAAAAAATGAAGTTTCATACGAGGAGCTGTCTAGATTGATGAGGATAAGGGATTTGATGAGCCTATTGTTGACTTATCCAATGAAAATGGACGAGGGAGGTAAATTAAAATCCTGCATTAGTGCATTTCCTGAATGGAAAGCTCAGTTATTGTCCACTGATCATGATACTATTGTGATGGACAAACCATGGCGTGTACTAACTGAGAAGGCACTGGGATGTATGAAGGGATTTATGCCCACGGAAATAATAAGTAAAATAGAAAGTGGTGAGAGATCCATCTTCAACCATAATGATGCCGATGCAATACCAAAAGCCATTCTCCACCTAACTGTTGATCTCGCAGTTAACCAACTAATTCAAACTTTGTTTTCTGGAGATTACTATGCACGCTATATCAGTCTGTCATCCAGAAACTTGGCTGAAAAAAGATCTGTAGTGAACAAAATAGAAGCAGCCTTTGAAGAGAAGCACAATATGTTTGGAATCGACAAAGATTTTCTTAGTGCCCTGTGGATCAATTCCTCAACATATAAGACTGATGCAGAGATTCGAGTTCAAGAAGAGATCAATAACAAGATGGCAGCAGGTTTTTCGGAGACAAAAGGGGGTGAGGAAAAAATGAATAGGCATTTGGTGATTGTAGTGGATGCAGACAGCAACAAGAAGCTGGACCTTCACAAAGTGCGTTTTCCTACTGGAGTTGTGGTGGTGTTGATAACAACTGAGCTGAAGGATGATGACTTCAGAATCACAAGCATGATGGATTTGAATATAAGGACCCAGGATCATTTGTTGCCTTGGGAACTCTTTTGCAGCTATGTGGGCAGTAGCAAGGTATGCTCATCACTGGTCATTCAGAGAATTGCAGTGCAAATTGTTAAGGAATGTCATGGCCATCTTCTTGCCGTTGTCCTTGTGGCAAACTACCTGAAGAATGTGGAAGATGTTAAACAGTGGCAAGTTGCACTTGACAAATTAAGCAGCAGCCTGAATCCTTCCTATGATTATAGAGATAGTGACGGAATTGGCATTAGTAGGGTCATGGTCAATGCATTTGTAGATATTATTTGGGAAGACATTGATGATACACAAAAGCTTTGCCTTGAACTAAGTTTGTCTGTTCACAACATTAAAATTGGGAAGCGACTTGCTATCTTAGTGTCTGATTGGGCCGATATTTTATCAGGACATACACAAGAAATGAAACTGAATTCAAATGAATTTGGTGAATACATAAGGCATATCAGAGTGCTTCTAGACCGTTTTGTCTTTTTGAAAATTGAAAGGGGAGATGTCTATTTGCCTGTAGAAACCTATGATATAATAAAATCATTACACACCTTGAATCCTTCCATCATAAGGCATGATGCATTAGGGTTTCTGGAGCCACCCTGCATTGAACGATGGCACAACCTTATTCGGATAGAATTGATGGACGACAAAATATGTGAGCTACCAGAATCACCAGAATGCCCTAAACTCAGAGTGCTCCTGTTGCAGGGTAATGTTGATTTGATGGATATCCCTGACTCATTTTTCGAGCACATGCCTTTGCTACAACAGTTGGACTTATCCTACACTAGTATAAGGGATTTGCCCTCTTCTGTCTCCAAATTAACACAACTTAAGAAATTTTATCTTAGAGGTTGTGATCTCTTCATGGAACTACCACCACAAATTGGACTACTAAAAAATCTTGAAGAGCTTGATCTTGATGGGACTTTGATAACCCATCTACCTAAAGAGATCCGAGAATTGATCAACTTGCGAAGCTTAACCCTTTGCTTTGATGGATACCATCATGTACTTGGTCATGGCAATAAAGGCAAGCAAATTTCCAACTCAACAATTATTCCTACGGGACTGATATCAAATCTTACTCAGTTGAATTATTTAAACATCAAAGTTGACCCTGAAGATGAGCGATGGAATGATAATGTTAATATTGTTTTTGTGGAAATTATTGGATTAAAGAGGTTGGAGACAGTGAGTATATATATCCCAAAGGCTAACCTTTTGAAATTGATACCTGTCCACAAATCCCTCAATTTCAGATTGGTTGTTGGTAATCATATGCGACGTTTCATATCGCGTGTGACACCTGAACTGGAGGAAAAATTCAAACGTTGTGACTATAGTATAAAGTTTGTTAATGGTGTAAATGTTCCAAACGTAGTGAAGATGACGCTTGGAAACTTCAAGGCCTTATACCTAGACCGACATATGACCATCAAGAGTCTCTCTGATTTTGAGTTGAGGAATTTATCTGGGTTGCAAATATGTGTATTGGCGGAATGTAATCAAATGGAAACAATTGTGGATAGAAGTTATTTACATGATGGGCCTGCTCTTCCAAATTTGGAGTTTTTGAGCGTATTCTATATGAAAAACTTAAAAAGCCTTTGTGAAAGGCCTAACCCCTCTTTTCTCCGCTTGAAGTCTATAGCATTGCACACTTGCCCCATGTTAACTACAGTTTTTACCGAAGATTCTCTTAAGGACCTTTCCTTATTGGAGGAGATTATTATTGAAGACTGTCCAAAAGTAACCACCCTTATACGCCATGACTCATCAGAAATAAAAACACGGTTCACAATGCCCAAGTTGAGAAAGATATCTCTTCTCTATCTTCCTGAATTGGTCAACATTTTTAATGGCCTGCATGTTGAACATGATGTAGAAAAAATGGTATTTTATTATTGTCCTAAACTCCAAAGTCTTTCACAATGGGAGTTGTCAAAGGCATCTGTGAAGATCATCATAGGAGAAAGCGTGTGGTGGGAAGCATTGAAATGGAATGCAGCAGAGTGGGGAGATGCTGGTCGACCCAATGTTTTTGAACGAATTTTTTCACCAATCAGTGAGGAGGCTGACATCATGACTCAACTGGCTGCACATCAAGAGACTCAATTAAGTACAGATCACGATGAGTTTCTGGGAACCAAACAAAGGCATGATGATAGTAAGTTACCATCAAATCCTGAAGAAGTAGAAGACCTACGGCGTGACTCAGCTGCAAATCCTTTGATTGCATTCACTTATGATGAGTTAAAGATTATCACAGAAAATTTTAGGCAAGATCGTGTGTTGGGGGGAGTAGGATTTGGAAGGGTTTACAAAGGATTCATTTCTGAGGAGTTAATAAGGAAAGGGCTTCCAACACTTGATGTAGCTGTTAAGGTTCATGATGGTGACAACAGTCATCAAGGGCACAGAGAATGGCTGTCGCAAGTCGAATTTTGGGGGCAGCTTTCACATCCAAATCTAGTCAAAGTAATTGGGTACTGTTGCGAAGACAACCATAGGGTACTAATATATGAGTACATGTCCCGGGGAGGTCTGGACAACTATTTGTTCAAATATGCACCTGCCATACCACCATTGTCCTGGTCCATGAGAATGAAGATTGCATTTGGCGCTGCAAAGGGACTTGCATTTCTTCATGAAGCAGAGAAAACTGTCATCTATCGATGTTTCAAGACATCAAATATTTTATTGGACCAGGAGTACAATTCAAAACTTTCCGACTTTGGCCTTGCTAAGTTTGGACCAGTTGGAGACAAATCCCATGTTTCTACTCGAGTAATGGGAACATATGGTTATGCCGCACCTGAATACTTAGCGACAGGTCATCTGTATATCAAAAGTGATGTTTACAGTTTTGGTGTTGTTCTTCTTGAACTTCTCACTGGAAGAAGATCCTTAGACACGACATTTGATGGAGAGCAGAAACTTGCAGAATGGGCTCATTCTTTGCTGAAGGAAAAGAAGAAACTTCTAAAAATCATAGATCCAAGGTTGGATGGTGATTATCCAATTAAAGCAGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACCGCGACCCGAAAGCAAGGCCTCTAATGCGAGAAATTGTACATTCATTGGAGCCTTTGCAGGCACACACAGAGGCACCTATTGGAAAAAAACGTTGA

>Glyma08g13040.1   sequence type=predicted peptide   gene model=Glyma08g13040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHRGLASIITGIREMGSRLSKARGSLKNESEGTSSGKNEVSYEELSRLMRIRDLMSLLLTYPMKMDEGGKLKSCISAFPEWKAQLLSTDHDTIVMDKPWRVLTEKALGCMKGFMPTEIISKIESGERSIFNHNDADAIPKAILHLTVDLAVNQLIQTLFSGDYYARYISLSSRNLAEKRSVVNKIEAAFEEKHNMFGIDKDFLSALWINSSTYKTDAEIRVQEEINNKMAAGFSETKGGEEKMNRHLVIVVDADSNKKLDLHKVRFPTGVVVVLITTELKDDDFRITSMMDLNIRTQDHLLPWELFCSYVGSSKVCSSLVIQRIAVQIVKECHGHLLAVVLVANYLKNVEDVKQWQVALDKLSSSLNPSYDYRDSDGIGISRVMVNAFVDIIWEDIDDTQKLCLELSLSVHNIKIGKRLAILVSDWADILSGHTQEMKLNSNEFGEYIRHIRVLLDRFVFLKIERGDVYLPVETYDIIKSLHTLNPSIIRHDALGFLEPPCIERWHNLIRIELMDDKICELPESPECPKLRVLLLQGNVDLMDIPDSFFEHMPLLQQLDLSYTSIRDLPSSVSKLTQLKKFYLRGCDLFMELPPQIGLLKNLEELDLDGTLITHLPKEIRELINLRSLTLCFDGYHHVLGHGNKGKQISNSTIIPTGLISNLTQLNYLNIKVDPEDERWNDNVNIVFVEIIGLKRLETVSIYIPKANLLKLIPVHKSLNFRLVVGNHMRRFISRVTPELEEKFKRCDYSIKFVNGVNVPNVVKMTLGNFKALYLDRHMTIKSLSDFELRNLSGLQICVLAECNQMETIVDRSYLHDGPALPNLEFLSVFYMKNLKSLCERPNPSFLRLKSIALHTCPMLTTVFTEDSLKDLSLLEEIIIEDCPKVTTLIRHDSSEIKTRFTMPKLRKISLLYLPELVNIFNGLHVEHDVEKMVFYYCPKLQSLSQWELSKASVKIIIGESVWWEALKWNAAEWGDAGRPNVFERIFSPISEEADIMTQLAAHQETQLSTDHDEFLGTKQRHDDSKLPSNPEEVEDLRRDSAANPLIAFTYDELKIITENFRQDRVLGGVGFGRVYKGFISEELIRKGLPTLDVAVKVHDGDNSHQGHREWLSQVEFWGQLSHPNLVKVIGYCCEDNHRVLIYEYMSRGGLDNYLFKYAPAIPPLSWSMRMKIAFGAAKGLAFLHEAEKTVIYRCFKTSNILLDQEYNSKLSDFGLAKFGPVGDKSHVSTRVMGTYGYAAPEYLATGHLYIKSDVYSFGVVLLELLTGRRSLDTTFDGEQKLAEWAHSLLKEKKKLLKIIDPRLDGDYPIKAVHKAAMLAYHCLNRDPKARPLMREIVHSLEPLQAHTEAPIGKKR*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo