SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G29810 | AT | Annotation by Michelle Graham. TAIR10: Transcriptional coactivator/pterin dehydratase | chr1:10435606-10437406 REVERSE LENGTH=187 | SoyBase | E_val: 6.00E-57 | ISS |
| GO:0006729 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tetrahydrobiopterin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004160 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dihydroxy-acid dehydratase activity | SoyBase | N/A | ISS |
| GO:0008124 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | SoyBase | N/A | ISS |
| KOG4073 | KOG | Pterin carbinolamine dehydratase PCBD/dimerization cofactor of HNF1 | JGI | ISS | |
| PTHR12599 | Panther | PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE | JGI | ISS | |
| PF01329 | PFAM | Pterin 4 alpha carbinolamine dehydratase | JGI | ISS | |
| UniRef100_C6TE00 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TE00_SOYBN | SoyBase | E_val: 9.00E-92 | ISS |
| UniRef100_G7KDI6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PCD/DCoH-like protein n=1 Tax=Medicago truncatula RepID=G7KDI6_MEDTR | SoyBase | E_val: 7.00E-58 | ISS |
|
Glyma08g12980 not represented in the dataset |
Glyma08g12980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g123200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g12980.2 sequence type=transcript gene model=Glyma08g12980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAAAGGCTGAAGTTTGATTATACAATAAAAATAATTAAAGTAGAGCCCCACGTGGGCAGTGCCTCATTTCCGGGAGAAACGATCACATACGGTTAGTTGATCTAGAATGATAAGCGGCACCCTCTGCGCTGCGCAAAGTTTTATCCAATTTCTCTATAGATTCGTTCATTCCCTTTAGTATTACCCTGTGCTTCTCTCCAACCTCTCATCATCTATCTATTTGCTCCAAACATGGATGCTAAATCTCGGATCTCGCCCACACGTCTGACAGATAAGAAGTGTGTGCCATGCAATCTGAAGGAATTGCGACCAATGAGTGAGGATGCAGCACACACTCTAATGCCACAGGTTGCTGAGTGGAATTTGGTAAACGAAGATGGTGTCATGAAGCTGAGGCGGTCATGGGCAGTAAAGACTTTCACCAAAGGATTGGAATTTTTCAGGATAGTAGCTGTTCTTGCTGAAAATGAAGGTCATCATCCTGATCTTCACCTTGTTGGCTGGAATAATGTTACAATAGAGATTTGGACTCATGCTGTTGAAAATGATTTCATACTTGCTGCTAAGATTGATAAGCTTGATGTGCTTGACCTACTTAGACGGAAGCCTTCAGACTGAGTCAATAGTGTTAAGAAGTACTGTAGTATTTGCAAATTACCCGTCTTTTTGCAGTAATATTTTGTTTTAAGATGGTGAATTACACTGCATGTTAGGTATTTTTATGAATTATTCGAAAATAAAATAAATATTTTCAATCAAAATAACTAA
>Glyma08g12980.1 sequence type=CDS gene model=Glyma08g12980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGCTAAATCTCGGATCTCGCCCACACGTCTGACAGATAAGAAGTGTGTGCCATGCAATCTGAAGGAATTGCGACCAATGAGTGAGGATGCAGCACACACTCTAATGCCACAGGTTGCTGAGTGGAATTTGGTAAACGAAGATGGTGTCATGAAGCTGAGGCGGTCATGGGCAGTAAAGACTTTCACCAAAGGATTGGAATTTTTCAGGATAGTAGCTGTTCTTGCTGAAAATGAAGGTCATCATCCTGATCTTCACCTTGTTGGCTGGAATAATGTTACAATAGAGATTTGGACTCATGCTGTTGGTGGGTTGACAGAAAATGATTTCATACTTGCTGCTAAGATTGATAAGCTTGATGTGCTTGACCTACTTAGACGGAAGCCTTCAGACTGA >Glyma08g12980.2 sequence type=CDS gene model=Glyma08g12980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGCTAAATCTCGGATCTCGCCCACACGTCTGACAGATAAGAAGTGTGTGCCATGCAATCTGAAGGAATTGCGACCAATGAGTGAGGATGCAGCACACACTCTAATGCCACAGGTTGCTGAGTGGAATTTGGTAAACGAAGATGGTGTCATGAAGCTGAGGCGGTCATGGGCAGTAAAGACTTTCACCAAAGGATTGGAATTTTTCAGGATAGTAGCTGTTCTTGCTGAAAATGAAGGTCATCATCCTGATCTTCACCTTGTTGGCTGGAATAATGTTACAATAGAGATTTGGACTCATGCTGTTGAAAATGATTTCATACTTGCTGCTAAGATTGATAAGCTTGATGTGCTTGACCTACTTAGACGGAAGCCTTCAGACTGA
>Glyma08g12980.1 sequence type=predicted peptide gene model=Glyma08g12980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDAKSRISPTRLTDKKCVPCNLKELRPMSEDAAHTLMPQVAEWNLVNEDGVMKLRRSWAVKTFTKGLEFFRIVAVLAENEGHHPDLHLVGWNNVTIEIWTHAVGGLTENDFILAAKIDKLDVLDLLRRKPSD* >Glyma08g12980.2 sequence type=predicted peptide gene model=Glyma08g12980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDAKSRISPTRLTDKKCVPCNLKELRPMSEDAAHTLMPQVAEWNLVNEDGVMKLRRSWAVKTFTKGLEFFRIVAVLAENEGHHPDLHLVGWNNVTIEIWTHAVENDFILAAKIDKLDVLDLLRRKPSD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
