Glyma08g12950 - SoyBase

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Report for Sequence Feature Glyma08g12950

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9467619
stop:	9469558
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13450	AT	Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein \| chr4:7815146-7815904 REVERSE LENGTH=219	SoyBase	E_val: 5.00E-70	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0048610	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction	SoyBase	N/A	ISS
GO:0048868	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube development	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00582	PFAM	Universal stress protein family	JGI		ISS
UniRef100_G7L828	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Universal stress protein family protein n=1 Tax=Medicago truncatula RepID=G7L828_MEDTR	SoyBase	E_val: 2.00E-91	ISS
UniRef100_I1KSL4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSL4_SOYBN	SoyBase	E_val: 2.00E-158	ISS

Expression Patterns of Glyma08g12950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12950

Paralog	Evidence	Comments
Glyma05g29850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g122800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g12950

Limit To All Plant Sequences

>Glyma08g12950.1   sequence type=CDS   gene model=Glyma08g12950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAAGGCATGGCGAGTAACCGAAACCGGAACCCTTGCGCGCAAGAAGCGCGCAAGGTGATGGTGGTGGCGGACCCGACGCGGGAATCGGCGGGCGCGTTGCAGTACGCGCTTGCGCATGCGGTGATCGAACAGGACGAGCTGATTCTGCTGCACGTTGAGAACCCTAGCTCGTGGCGAAACACCATATCGACGTTCCTGAAGATGCCTTCGTTGGGAAGCAGCACCACTGCGTCGCTGGACCTCGGAGGAGGTGGAGGAGGGGGAGCAGCCGCGGCGCCGGACGGAGAAGGGTTGGATTTTCTGGAGGAGATGAAGCATGCATGTAGCGTTTCTCAGCCGAAAATGAAGGTGCGTGTGGTGAAGGTGGAGATGGATGGAAGAGACAAGGCTAGCATTGTTCTCTCGCAGAGCAAAACGCATGGGGTTGACGTCGTAGTTATAGGCCAGAAGCGCAATATTACTTCGGCCATATTAGGATACAAGCGACCTGCAAGTGGATCTATGAAAGGGGTGAAAGCGATAGACACTGCTGAGTATTTGATTCAAAACAGCTCGTGCACCTGTGTTAGTGTACAGAGAAAAGGCCAAAATGGAGGCTTTGTTCTCAACTCCAAAACCCACAGAAATTTCTGGCTCTTAGCCTAA

Predicted protein sequences of Glyma08g12950

Limit To All Plant Sequences

>Glyma08g12950.1   sequence type=predicted peptide   gene model=Glyma08g12950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQGMASNRNRNPCAQEARKVMVVADPTRESAGALQYALAHAVIEQDELILLHVENPSSWRNTISTFLKMPSLGSSTTASLDLGGGGGGGAAAAPDGEGLDFLEEMKHACSVSQPKMKVRVVKVEMDGRDKASIVLSQSKTHGVDVVVIGQKRNITSAILGYKRPASGSMKGVKAIDTAEYLIQNSSCTCVSVQRKGQNGGFVLNSKTHRNFWLLA*

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