Glyma08g12910 - SoyBase

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Report for Sequence Feature Glyma08g12910

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9445583
stop:	9448442
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29380	AT	Annotation by Michelle Graham. TAIR10: Carbohydrate-binding X8 domain superfamily protein \| chr1:10284209-10285671 FORWARD LENGTH=315	SoyBase	E_val: 6.00E-40	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR16631	Panther	GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED	JGI		ISS
PF07983	PFAM	X8 domain	JGI		ISS
UniRef100_G7IIX1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=G7IIX1_MEDTR	SoyBase	E_val: 4.00E-50	ISS
UniRef100_I1KSL0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSL0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g12910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12910

Paralog	Evidence	Comments
Glyma05g29790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g122400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g12910

Limit To All Plant Sequences

>Glyma08g12910.2   sequence type=transcript   gene model=Glyma08g12910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTCTTCATTACAAACCCAAAAGGCAAACCCCTTGCTCAGGCTTTACTTTTTGGTTCAGTCCCATAAAACAGTAGAAAAGAGTGGCTCAAAAGAGAAAGGACGTTGCAGAGACATCACCGTCACATTAATTATATATTGGCATTGCATCTCTCAAGCATCAGATCACCCTTTAACCTTTTTCCTTTGCCATGCACCCTTTGTTTCCCTCAGTTTGCACCTTCTCTTGCTTGCTTATTTCAACTATCCCATGCCTCATTTCTCAAGTTTGCCTATATTCTTCCTTCTCTCTTTGATCCAAGAAAGCTATGATTCTTCAGGATTTTATTATATATAAAAATATAAAAAGTTTAAGTAATGAAATTCCTCTTCAAAGGAACAGAGAAGGAGCTGCCCTTGTTTAATAAATCTTAAGGAAACACCTGTAATCCAAGCACAAGCCGCGACCTGCAGCAATGAATGCTAGAAGCTGGCACCTCGTATTATTCTCCTTATGTCTTTTCTTTGGTTCAGGTCTAGGAACAACCAAAATATTAATAAATGGCAAAAAACAGGAAATCTTCTCATCATCGGAATTGGGTACTCAATTAGATGATGTTCCTATCGTCAATCCCACAACTCCTGACACAGGAAATCCATATATGGGAAACCCTAACATTCCTCAAACACCTGACACATCAGGGCCAAACCCAACAACCCCAACCACAAATCCAACAACCCCAACCACAACGCCCACAACCCCAACTACAACACCCACAACCCCGACTACTACATCCTCAGGTGGTCAATGGTGTGTTGCTAACCAGGGAGCTTCAGACACTGCTCTACAGGTTGCTCTTGACTATGCTTGTGGGTTTGGAGGTGCAGACTGCTCAGCAATACAACCAGGAGCAAGCTGTTATAATCCGAACACTGTCCGCGATCATGCTTCTTATGCATTCAATGACTACTACCAGAAGAATCCAGCACCTACCAGCTGTGTATTTGGAGGAACAGCATCTCTTACAAGCAATGATCCAATGGGAGTTGCAAATACGCATCACCCAAGTCAACAAGCACTAATCAGCCACCACCAACACCAACATTTGTCAGCCCACCAAGTCCACCAACTCCAGTGATGACCCCAACTCCACCAGACATGCTAAATCCTGGTGGCGGATCAACTGTCTTTGGTTCAGAACCAACAGGAAGCCCCAACACAGCCACATTTGCATTTAATTCCCTGCTGATGTTGTTCACATGTGGTCTGTTGGCTTCCCTTCAACTAGCAAATTACATCTAGACGATAAACAAGGTCCAGTCATTCTTTATGTGATGTGTTCGAATTCAATCAGTCTTCCAGCAGTTTTTGCAAAATTTCAAGGAGTCAGAGTCAACAAATCTTGCAATTAAAATTACTTATACCTTTCATCTATGTATGGCTGTTAGTTGATCAAGCCAAAAAGGATTTATAGGTAGTAGACAGTTTTTCTACAGTATTAGCTTCTCTTCCATAGAAAATCCTTGTAATTAATATCAGCTAGCATGCCATTTTATTTAATAAACAGAATAAAATACATTAAAGAACTTAAAATCATTGTGT

Coding sequences of Glyma08g12910

Limit To All Plant Sequences

>Glyma08g12910.1   sequence type=CDS   gene model=Glyma08g12910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCTAGAAGCTGGCACCTCGTATTATTCTCCTTATGTCTTTTCTTTGGTTCAGGTCTAGGAACAACCAAAATATTAATAAATGGCAAAAAACAGGAAATCTTCTCATCATCGGAATTGGGTACTCAATTAGATGATGTTCCTATCGTCAATCCCACAACTCCTGACACAGGAAATCCATATATGGGAAACCCTAACATTCCTCAAACACCTGACACATCAGGGCCAAACCCAACAACCCCAACCACAAATCCAACAACCCCAACCACAACGCCCACAACCCCAACTACAACACCCACAACCCCGACTACTACATCCTCAGGTGGTCAATGGTGTGTTGCTAACCAGGGAGCTTCAGACACTGCTCTACAGGTTGCTCTTGACTATGCTTGTGGGTTTGGAGGTGCAGACTGCTCAGCAATACAACCAGGAGCAAGCTGTTATAATCCGAACACTGTCCGCGATCATGCTTCTTATGCATTCAATGACTACTACCAGAAGAATCCAGCACCTACCAGCTGTGTATTTGGAGGAACAGCATCTCTTACAAGCAATGATCCAAGTAGTGGGAGTTGCAAATACGCATCACCCAAGTCAACAAGCACTAATCAGCCACCACCAACACCAACATTTGTCAGCCCACCAAGTCCACCAACTCCAGTGATGACCCCAACTCCACCAGACATGCTAAATCCTGGTGGCGGATCAACTGTCTTTGGTTCAGAACCAACAGGAAGCCCCAACACAGCCACATTTGCATTTAATTCCCTGCTGATGTTGTTCACATGTGGTCTGTTGGCTTCCCTTCAACTAGCAAATTACATCTAG

>Glyma08g12910.2   sequence type=CDS   gene model=Glyma08g12910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCTAGAAGCTGGCACCTCGTATTATTCTCCTTATGTCTTTTCTTTGGTTCAGGTCTAGGAACAACCAAAATATTAATAAATGGCAAAAAACAGGAAATCTTCTCATCATCGGAATTGGGTACTCAATTAGATGATGTTCCTATCGTCAATCCCACAACTCCTGACACAGGAAATCCATATATGGGAAACCCTAACATTCCTCAAACACCTGACACATCAGGGCCAAACCCAACAACCCCAACCACAAATCCAACAACCCCAACCACAACGCCCACAACCCCAACTACAACACCCACAACCCCGACTACTACATCCTCAGGTGGTCAATGGTGTGTTGCTAACCAGGGAGCTTCAGACACTGCTCTACAGGTTGCTCTTGACTATGCTTGTGGGTTTGGAGGTGCAGACTGCTCAGCAATACAACCAGGAGCAAGCTGTTATAATCCGAACACTGTCCGCGATCATGCTTCTTATGCATTCAATGACTACTACCAGAAGAATCCAGCACCTACCAGCTGTGTATTTGGAGGAACAGCATCTCTTACAAGCAATGATCCAATGGGAGTTGCAAATACGCATCACCCAAGTCAACAAGCACTAATCAGCCACCACCAACACCAACATTTGTCAGCCCACCAAGTCCACCAACTCCAGTGA

Predicted protein sequences of Glyma08g12910

Limit To All Plant Sequences

>Glyma08g12910.1   sequence type=predicted peptide   gene model=Glyma08g12910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNARSWHLVLFSLCLFFGSGLGTTKILINGKKQEIFSSSELGTQLDDVPIVNPTTPDTGNPYMGNPNIPQTPDTSGPNPTTPTTNPTTPTTTPTTPTTTPTTPTTTSSGGQWCVANQGASDTALQVALDYACGFGGADCSAIQPGASCYNPNTVRDHASYAFNDYYQKNPAPTSCVFGGTASLTSNDPSSGSCKYASPKSTSTNQPPPTPTFVSPPSPPTPVMTPTPPDMLNPGGGSTVFGSEPTGSPNTATFAFNSLLMLFTCGLLASLQLANYI*

>Glyma08g12910.2   sequence type=predicted peptide   gene model=Glyma08g12910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNARSWHLVLFSLCLFFGSGLGTTKILINGKKQEIFSSSELGTQLDDVPIVNPTTPDTGNPYMGNPNIPQTPDTSGPNPTTPTTNPTTPTTTPTTPTTTPTTPTTTSSGGQWCVANQGASDTALQVALDYACGFGGADCSAIQPGASCYNPNTVRDHASYAFNDYYQKNPAPTSCVFGGTASLTSNDPMGVANTHHPSQQALISHHQHQHLSAHQVHQLQ*

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