Glyma08g12900 - SoyBase

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Report for Sequence Feature Glyma08g12900

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9443323
stop:	9445181
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29390	AT	Annotation by Michelle Graham. TAIR10: cold regulated 314 thylakoid membrane 2 \| chr1:10286409-10287668 REVERSE LENGTH=183	SoyBase	E_val: 7.00E-66	ISS
GO:0009631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cold acclimation	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0070417	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to cold	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0031357	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to chloroplast inner membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05562	PFAM	Cold acclimation protein WCOR413	JGI		ISS
UniRef100_G7L817	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cold acclimation protein COR413-TM1 n=1 Tax=Medicago truncatula RepID=G7L817_MEDTR	SoyBase	E_val: 2.00E-82	ISS
UniRef100_I1KSK8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSK8_SOYBN	SoyBase	E_val: 4.00E-152	ISS

Expression Patterns of Glyma08g12900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g12900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g122300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g12900

Limit To All Plant Sequences

>Glyma08g12900.2   sequence type=transcript   gene model=Glyma08g12900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGGTACTGTAATAACTTATGGTTATTTATGAGAAAGTTAAAATTAATAGTGGGTAGAAATAGAATGAAAGATAGAGAGAGAGGAGAAAGAAGAAATGTCAAGAATGGCAATGCGTGTGTCTCCTTCAGCTTCAAGTGCACTCTCTCTCCTAAACTGCAAGCAACCACCTCCAGTTTCATGCATCCGTGTACCTTGTCTCTCTCGCTCCTCGCCGCCATCGCTCTCCTACACCTTCAATCCTCTTAGGTCCTTCATCGGTCACGGCGGAAGCAGAAGCCCAGGGTTTCGTGTCCATTGCTACGCTCCTGCTCCTCTCACTCCTCCCAATCTGCAATGGATCTCTACCATTTCCTCAGTGGTTTTGATACTGGCGAGAGGCACCGCGGTGCCGAAATCGTATATTGTTCCGTTGTTTGCTCTGCAAGCACCTGCAGGTGTCGTTTCCTGGATCAAAGGTAGATATGGTGTGTGGACAGCATTCTTGGCACTTCTGATTCGTCTATTCTTCTATATTCCTGGTGAACTTGAGTTGCCATTTCTGGCATTGCTCTTGCTGATGGTAGCTCCCTACGAGGCTATGAAATTAAGGTATACAAAAGAAGGTGCTGTGATTTCATTATTAATCTCGGTGTATCTGGCTTTCCAGCATTTCTCAAGAACAAGCTTACAACAATCATTTGACCAAGGTTCAATTGTTGCCACCTTAGCTGTCATTTGTATCACTGTTGTATCTTTGTTGCTTCTAATCTGAGTTGGCTTTGAAATGATGTACACAGTACACTAATTGTAAATAAGAATAATAGTTGTTGGAGTGATGATATTAAAAAGTTATGGGTTATGTTGGATACTCAGTCTTGTACTTTTCACTTGTTAATTCAAATAATGAAGTTGGAATCAGTATTTGGTATTTGTCATAGAATTTTTTTTAG

Coding sequences of Glyma08g12900

Limit To All Plant Sequences

>Glyma08g12900.1   sequence type=CDS   gene model=Glyma08g12900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGAATGGCAATGCGTGTGTCTCCTTCAGCTTCAAGTGCACTCTCTCTCCTAAACTGCAAGCAACCACCTCCAGTTTCATGCATCCGTGTACCTTGTCTCTCTCGCTCCTCGCCGCCATCGCTCTCCTACACCTTCAATCCTCTTAGAAGGTCCTTCATCGGTCACGGCGGAAGCAGAAGCCCAGGGTTTCGTGTCCATTGCTACGCTCCTGCTCCTCTCACTCCTCCCAATCTGCAATGGATCTCTACCATTTCCTCAGTGGTTTTGATACTGGCGAGAGGCACCGCGGTGCCGAAATCGTATATTGTTCCGTTGTTTGCTCTGCAAGCACCTGCAGGTGTCGTTTCCTGGATCAAAGGTAGATATGGTGTGTGGACAGCATTCTTGGCACTTCTGATTCGTCTATTCTTCTATATTCCTGGTGAACTTGAGTTGCCATTTCTGGCATTGCTCTTGCTGATGGTAGCTCCCTACGAGGCTATGAAATTAAGGTATACAAAAGAAGGTGCTGTGATTTCATTATTAATCTCGGTGTATCTGGCTTTCCAGCATTTCTCAAGAACAAGCTTACAACAATCATTTGACCAAGGTTCAATTGTTGCCACCTTAGCTGTCATTTGTATCACTGTTGTATCTTTGTTGCTTCTAATCTGA

>Glyma08g12900.2   sequence type=CDS   gene model=Glyma08g12900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGAATGGCAATGCGTGTGTCTCCTTCAGCTTCAAGTGCACTCTCTCTCCTAAACTGCAAGCAACCACCTCCAGTTTCATGCATCCGTGTACCTTGTCTCTCTCGCTCCTCGCCGCCATCGCTCTCCTACACCTTCAATCCTCTTAGGTCCTTCATCGGTCACGGCGGAAGCAGAAGCCCAGGGTTTCGTGTCCATTGCTACGCTCCTGCTCCTCTCACTCCTCCCAATCTGCAATGGATCTCTACCATTTCCTCAGTGGTTTTGATACTGGCGAGAGGCACCGCGGTGCCGAAATCGTATATTGTTCCGTTGTTTGCTCTGCAAGCACCTGCAGGTGTCGTTTCCTGGATCAAAGGTAGATATGGTGTGTGGACAGCATTCTTGGCACTTCTGATTCGTCTATTCTTCTATATTCCTGGTGAACTTGAGTTGCCATTTCTGGCATTGCTCTTGCTGATGGTAGCTCCCTACGAGGCTATGAAATTAAGGTATACAAAAGAAGGTGCTGTGATTTCATTATTAATCTCGGTGTATCTGGCTTTCCAGCATTTCTCAAGAACAAGCTTACAACAATCATTTGACCAAGGTTCAATTGTTGCCACCTTAGCTGTCATTTGTATCACTGTTGTATCTTTGTTGCTTCTAATCTGA

Predicted protein sequences of Glyma08g12900

Limit To All Plant Sequences

>Glyma08g12900.1   sequence type=predicted peptide   gene model=Glyma08g12900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRMAMRVSPSASSALSLLNCKQPPPVSCIRVPCLSRSSPPSLSYTFNPLRRSFIGHGGSRSPGFRVHCYAPAPLTPPNLQWISTISSVVLILARGTAVPKSYIVPLFALQAPAGVVSWIKGRYGVWTAFLALLIRLFFYIPGELELPFLALLLLMVAPYEAMKLRYTKEGAVISLLISVYLAFQHFSRTSLQQSFDQGSIVATLAVICITVVSLLLLI*

>Glyma08g12900.2   sequence type=predicted peptide   gene model=Glyma08g12900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRMAMRVSPSASSALSLLNCKQPPPVSCIRVPCLSRSSPPSLSYTFNPLRSFIGHGGSRSPGFRVHCYAPAPLTPPNLQWISTISSVVLILARGTAVPKSYIVPLFALQAPAGVVSWIKGRYGVWTAFLALLIRLFFYIPGELELPFLALLLLMVAPYEAMKLRYTKEGAVISLLISVYLAFQHFSRTSLQQSFDQGSIVATLAVICITVVSLLLLI*

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