SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G29390 | AT | Annotation by Michelle Graham. TAIR10: cold regulated 314 thylakoid membrane 2 | chr1:10286409-10287668 REVERSE LENGTH=183 | SoyBase | E_val: 7.00E-66 | ISS |
| GO:0009631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cold acclimation | SoyBase | N/A | ISS |
| GO:0030003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis | SoyBase | N/A | ISS |
| GO:0042631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation | SoyBase | N/A | ISS |
| GO:0070417 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to cold | SoyBase | N/A | ISS |
| GO:0070838 | GO-bp | Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0031357 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to chloroplast inner membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF05562 | PFAM | Cold acclimation protein WCOR413 | JGI | ISS | |
| UniRef100_G7L817 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cold acclimation protein COR413-TM1 n=1 Tax=Medicago truncatula RepID=G7L817_MEDTR | SoyBase | E_val: 2.00E-82 | ISS |
| UniRef100_I1KSK8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSK8_SOYBN | SoyBase | E_val: 4.00E-152 | ISS |
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Glyma08g12900 not represented in the dataset |
Glyma08g12900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g122300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g12900.2 sequence type=transcript gene model=Glyma08g12900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGGTACTGTAATAACTTATGGTTATTTATGAGAAAGTTAAAATTAATAGTGGGTAGAAATAGAATGAAAGATAGAGAGAGAGGAGAAAGAAGAAATGTCAAGAATGGCAATGCGTGTGTCTCCTTCAGCTTCAAGTGCACTCTCTCTCCTAAACTGCAAGCAACCACCTCCAGTTTCATGCATCCGTGTACCTTGTCTCTCTCGCTCCTCGCCGCCATCGCTCTCCTACACCTTCAATCCTCTTAGGTCCTTCATCGGTCACGGCGGAAGCAGAAGCCCAGGGTTTCGTGTCCATTGCTACGCTCCTGCTCCTCTCACTCCTCCCAATCTGCAATGGATCTCTACCATTTCCTCAGTGGTTTTGATACTGGCGAGAGGCACCGCGGTGCCGAAATCGTATATTGTTCCGTTGTTTGCTCTGCAAGCACCTGCAGGTGTCGTTTCCTGGATCAAAGGTAGATATGGTGTGTGGACAGCATTCTTGGCACTTCTGATTCGTCTATTCTTCTATATTCCTGGTGAACTTGAGTTGCCATTTCTGGCATTGCTCTTGCTGATGGTAGCTCCCTACGAGGCTATGAAATTAAGGTATACAAAAGAAGGTGCTGTGATTTCATTATTAATCTCGGTGTATCTGGCTTTCCAGCATTTCTCAAGAACAAGCTTACAACAATCATTTGACCAAGGTTCAATTGTTGCCACCTTAGCTGTCATTTGTATCACTGTTGTATCTTTGTTGCTTCTAATCTGAGTTGGCTTTGAAATGATGTACACAGTACACTAATTGTAAATAAGAATAATAGTTGTTGGAGTGATGATATTAAAAAGTTATGGGTTATGTTGGATACTCAGTCTTGTACTTTTCACTTGTTAATTCAAATAATGAAGTTGGAATCAGTATTTGGTATTTGTCATAGAATTTTTTTTAG
>Glyma08g12900.1 sequence type=CDS gene model=Glyma08g12900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAAGAATGGCAATGCGTGTGTCTCCTTCAGCTTCAAGTGCACTCTCTCTCCTAAACTGCAAGCAACCACCTCCAGTTTCATGCATCCGTGTACCTTGTCTCTCTCGCTCCTCGCCGCCATCGCTCTCCTACACCTTCAATCCTCTTAGAAGGTCCTTCATCGGTCACGGCGGAAGCAGAAGCCCAGGGTTTCGTGTCCATTGCTACGCTCCTGCTCCTCTCACTCCTCCCAATCTGCAATGGATCTCTACCATTTCCTCAGTGGTTTTGATACTGGCGAGAGGCACCGCGGTGCCGAAATCGTATATTGTTCCGTTGTTTGCTCTGCAAGCACCTGCAGGTGTCGTTTCCTGGATCAAAGGTAGATATGGTGTGTGGACAGCATTCTTGGCACTTCTGATTCGTCTATTCTTCTATATTCCTGGTGAACTTGAGTTGCCATTTCTGGCATTGCTCTTGCTGATGGTAGCTCCCTACGAGGCTATGAAATTAAGGTATACAAAAGAAGGTGCTGTGATTTCATTATTAATCTCGGTGTATCTGGCTTTCCAGCATTTCTCAAGAACAAGCTTACAACAATCATTTGACCAAGGTTCAATTGTTGCCACCTTAGCTGTCATTTGTATCACTGTTGTATCTTTGTTGCTTCTAATCTGA >Glyma08g12900.2 sequence type=CDS gene model=Glyma08g12900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAAGAATGGCAATGCGTGTGTCTCCTTCAGCTTCAAGTGCACTCTCTCTCCTAAACTGCAAGCAACCACCTCCAGTTTCATGCATCCGTGTACCTTGTCTCTCTCGCTCCTCGCCGCCATCGCTCTCCTACACCTTCAATCCTCTTAGGTCCTTCATCGGTCACGGCGGAAGCAGAAGCCCAGGGTTTCGTGTCCATTGCTACGCTCCTGCTCCTCTCACTCCTCCCAATCTGCAATGGATCTCTACCATTTCCTCAGTGGTTTTGATACTGGCGAGAGGCACCGCGGTGCCGAAATCGTATATTGTTCCGTTGTTTGCTCTGCAAGCACCTGCAGGTGTCGTTTCCTGGATCAAAGGTAGATATGGTGTGTGGACAGCATTCTTGGCACTTCTGATTCGTCTATTCTTCTATATTCCTGGTGAACTTGAGTTGCCATTTCTGGCATTGCTCTTGCTGATGGTAGCTCCCTACGAGGCTATGAAATTAAGGTATACAAAAGAAGGTGCTGTGATTTCATTATTAATCTCGGTGTATCTGGCTTTCCAGCATTTCTCAAGAACAAGCTTACAACAATCATTTGACCAAGGTTCAATTGTTGCCACCTTAGCTGTCATTTGTATCACTGTTGTATCTTTGTTGCTTCTAATCTGA
>Glyma08g12900.1 sequence type=predicted peptide gene model=Glyma08g12900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRMAMRVSPSASSALSLLNCKQPPPVSCIRVPCLSRSSPPSLSYTFNPLRRSFIGHGGSRSPGFRVHCYAPAPLTPPNLQWISTISSVVLILARGTAVPKSYIVPLFALQAPAGVVSWIKGRYGVWTAFLALLIRLFFYIPGELELPFLALLLLMVAPYEAMKLRYTKEGAVISLLISVYLAFQHFSRTSLQQSFDQGSIVATLAVICITVVSLLLLI* >Glyma08g12900.2 sequence type=predicted peptide gene model=Glyma08g12900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRMAMRVSPSASSALSLLNCKQPPPVSCIRVPCLSRSSPPSLSYTFNPLRSFIGHGGSRSPGFRVHCYAPAPLTPPNLQWISTISSVVLILARGTAVPKSYIVPLFALQAPAGVVSWIKGRYGVWTAFLALLIRLFFYIPGELELPFLALLLLMVAPYEAMKLRYTKEGAVISLLISVYLAFQHFSRTSLQQSFDQGSIVATLAVICITVVSLLLLI*
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