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Report for Sequence Feature Glyma08g12900

Feature Type:gene_model
Chromosome:Gm08
Start:9443323
stop:9445181
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29390AT Annotation by Michelle Graham. TAIR10: cold regulated 314 thylakoid membrane 2 | chr1:10286409-10287668 REVERSE LENGTH=183 SoyBaseE_val: 7.00E-66ISS
GO:0009631GO-bp Annotation by Michelle Graham. GO Biological Process: cold acclimation SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0042631GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation SoyBaseN/AISS
GO:0070417GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to cold SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0031357GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to chloroplast inner membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05562PFAM Cold acclimation protein WCOR413 JGI ISS
UniRef100_G7L817UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cold acclimation protein COR413-TM1 n=1 Tax=Medicago truncatula RepID=G7L817_MEDTR SoyBaseE_val: 2.00E-82ISS
UniRef100_I1KSK8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSK8_SOYBN SoyBaseE_val: 4.00E-152ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g122300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g12900.2   sequence type=transcript   gene model=Glyma08g12900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGGTACTGTAATAACTTATGGTTATTTATGAGAAAGTTAAAATTAATAGTGGGTAGAAATAGAATGAAAGATAGAGAGAGAGGAGAAAGAAGAAATGTCAAGAATGGCAATGCGTGTGTCTCCTTCAGCTTCAAGTGCACTCTCTCTCCTAAACTGCAAGCAACCACCTCCAGTTTCATGCATCCGTGTACCTTGTCTCTCTCGCTCCTCGCCGCCATCGCTCTCCTACACCTTCAATCCTCTTAGGTCCTTCATCGGTCACGGCGGAAGCAGAAGCCCAGGGTTTCGTGTCCATTGCTACGCTCCTGCTCCTCTCACTCCTCCCAATCTGCAATGGATCTCTACCATTTCCTCAGTGGTTTTGATACTGGCGAGAGGCACCGCGGTGCCGAAATCGTATATTGTTCCGTTGTTTGCTCTGCAAGCACCTGCAGGTGTCGTTTCCTGGATCAAAGGTAGATATGGTGTGTGGACAGCATTCTTGGCACTTCTGATTCGTCTATTCTTCTATATTCCTGGTGAACTTGAGTTGCCATTTCTGGCATTGCTCTTGCTGATGGTAGCTCCCTACGAGGCTATGAAATTAAGGTATACAAAAGAAGGTGCTGTGATTTCATTATTAATCTCGGTGTATCTGGCTTTCCAGCATTTCTCAAGAACAAGCTTACAACAATCATTTGACCAAGGTTCAATTGTTGCCACCTTAGCTGTCATTTGTATCACTGTTGTATCTTTGTTGCTTCTAATCTGAGTTGGCTTTGAAATGATGTACACAGTACACTAATTGTAAATAAGAATAATAGTTGTTGGAGTGATGATATTAAAAAGTTATGGGTTATGTTGGATACTCAGTCTTGTACTTTTCACTTGTTAATTCAAATAATGAAGTTGGAATCAGTATTTGGTATTTGTCATAGAATTTTTTTTAG

>Glyma08g12900.1   sequence type=CDS   gene model=Glyma08g12900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGAATGGCAATGCGTGTGTCTCCTTCAGCTTCAAGTGCACTCTCTCTCCTAAACTGCAAGCAACCACCTCCAGTTTCATGCATCCGTGTACCTTGTCTCTCTCGCTCCTCGCCGCCATCGCTCTCCTACACCTTCAATCCTCTTAGAAGGTCCTTCATCGGTCACGGCGGAAGCAGAAGCCCAGGGTTTCGTGTCCATTGCTACGCTCCTGCTCCTCTCACTCCTCCCAATCTGCAATGGATCTCTACCATTTCCTCAGTGGTTTTGATACTGGCGAGAGGCACCGCGGTGCCGAAATCGTATATTGTTCCGTTGTTTGCTCTGCAAGCACCTGCAGGTGTCGTTTCCTGGATCAAAGGTAGATATGGTGTGTGGACAGCATTCTTGGCACTTCTGATTCGTCTATTCTTCTATATTCCTGGTGAACTTGAGTTGCCATTTCTGGCATTGCTCTTGCTGATGGTAGCTCCCTACGAGGCTATGAAATTAAGGTATACAAAAGAAGGTGCTGTGATTTCATTATTAATCTCGGTGTATCTGGCTTTCCAGCATTTCTCAAGAACAAGCTTACAACAATCATTTGACCAAGGTTCAATTGTTGCCACCTTAGCTGTCATTTGTATCACTGTTGTATCTTTGTTGCTTCTAATCTGA

>Glyma08g12900.2   sequence type=CDS   gene model=Glyma08g12900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGAATGGCAATGCGTGTGTCTCCTTCAGCTTCAAGTGCACTCTCTCTCCTAAACTGCAAGCAACCACCTCCAGTTTCATGCATCCGTGTACCTTGTCTCTCTCGCTCCTCGCCGCCATCGCTCTCCTACACCTTCAATCCTCTTAGGTCCTTCATCGGTCACGGCGGAAGCAGAAGCCCAGGGTTTCGTGTCCATTGCTACGCTCCTGCTCCTCTCACTCCTCCCAATCTGCAATGGATCTCTACCATTTCCTCAGTGGTTTTGATACTGGCGAGAGGCACCGCGGTGCCGAAATCGTATATTGTTCCGTTGTTTGCTCTGCAAGCACCTGCAGGTGTCGTTTCCTGGATCAAAGGTAGATATGGTGTGTGGACAGCATTCTTGGCACTTCTGATTCGTCTATTCTTCTATATTCCTGGTGAACTTGAGTTGCCATTTCTGGCATTGCTCTTGCTGATGGTAGCTCCCTACGAGGCTATGAAATTAAGGTATACAAAAGAAGGTGCTGTGATTTCATTATTAATCTCGGTGTATCTGGCTTTCCAGCATTTCTCAAGAACAAGCTTACAACAATCATTTGACCAAGGTTCAATTGTTGCCACCTTAGCTGTCATTTGTATCACTGTTGTATCTTTGTTGCTTCTAATCTGA

>Glyma08g12900.1   sequence type=predicted peptide   gene model=Glyma08g12900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRMAMRVSPSASSALSLLNCKQPPPVSCIRVPCLSRSSPPSLSYTFNPLRRSFIGHGGSRSPGFRVHCYAPAPLTPPNLQWISTISSVVLILARGTAVPKSYIVPLFALQAPAGVVSWIKGRYGVWTAFLALLIRLFFYIPGELELPFLALLLLMVAPYEAMKLRYTKEGAVISLLISVYLAFQHFSRTSLQQSFDQGSIVATLAVICITVVSLLLLI*

>Glyma08g12900.2   sequence type=predicted peptide   gene model=Glyma08g12900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRMAMRVSPSASSALSLLNCKQPPPVSCIRVPCLSRSSPPSLSYTFNPLRSFIGHGGSRSPGFRVHCYAPAPLTPPNLQWISTISSVVLILARGTAVPKSYIVPLFALQAPAGVVSWIKGRYGVWTAFLALLIRLFFYIPGELELPFLALLLLMVAPYEAMKLRYTKEGAVISLLISVYLAFQHFSRTSLQQSFDQGSIVATLAVICITVVSLLLLI*







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