Glyma08g12890 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g12890

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9431127
stop:	9437939
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25737	AT	Annotation by Michelle Graham. TAIR10: Sulfite exporter TauE/SafE family protein \| chr2:10977174-10979677 FORWARD LENGTH=476	SoyBase	E_val: 8.00E-176	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
PTHR14255	Panther	ATP-DEPENDENT PROTEASE (CEREBLON)	JGI		ISS
PF01925	PFAM	Sulfite exporter TauE/SafE	JGI		ISS
UniRef100_Q6EQH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q6EQH5_ORYSJ	SoyBase	E_val: 7.00E-166	ISS
UniRef100_UPI000233842C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233842C related cluster n=1 Tax=unknown RepID=UPI000233842C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g12890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12890

Paralog	Evidence	Comments
Glyma05g29780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma08g12890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g12890

Limit To All Plant Sequences

>Glyma08g12890.2   sequence type=transcript   gene model=Glyma08g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAATCACTTGATAGTGATAAGGAACGAGTGTGTTGAAGAAGTTTCTTTCAATAATTAGTGCATAAGGGTTCCGTAAGATATAGTATGAGAAATGAACAGAAAACATACAGATCATTCATGTTAACATCAGTATACCCTAACTCCAGATTTCTCCTTCTTACTCTTAAAATTTGAATGAACTCATTGTTCTTATGAAGTGAGGAGGTTGAAAATTTCTATGCATGGTTTTGGTTGTGTTCGTCTCATTGAAGCAACATCTAGGAAAGTCATAGTACTAAAAGGAATTTGTTGATTGAGTTTTGAAAACTGCTCTCTATCTAAATCTAAAGAGCAGTACAATTATGGCTGTGCATGGATCCAAAAGGTGGGCTGTGAAATGGGTTGCTGAAAAGGTTCTGGTTGCTTTTCTTCTTGTTTCAGTCTATGTTGCTTCTTCTCAGCAAAATACAGACCAGAAAACAATCTCATCAGCATCCAATGAGACGAAAGGGGTTGATACTAAAGCTCATCATGCTGAGGGTTTTTACAAACACACTTGGCCGGAGATGAAATTTGGGTGGAAAATAATAGTGGGCAGCATAATTGGATTCCTAGGATCAGCATTTGGGACTGTGGGAGGTGTTGGTGGGGGTGGCATCTTTGTGCCCATGCTTACCCTTATTATCGGATTCGATGCAAGATCAGCAACAGCAATATCAAAATGCATGATTACGGGTGGAGCAGGAGCAACTATTTTCTACAATCTGAAGCAGAGGCACCCAACTCTTGACATGCCTGTGATTGACTATGATCTAGCACTTCTTTTTCAACCAATGTTGATGCTTGGAATCAGTATAGGAGTTGCTTTCAATGTGATTTTTCCTGACTGGATGCTAACAGCTTTGTTAATAGTAGTTTTCATAGGCCTTTCATTCAATGCATTCTTTAAGGGTGTCAAAACCTGGAAAAAAGAAACCATTGTTAACAAGGAAGCTAGGCAGAATGTACGGTTAAATGATACTGAAAGAACCGGTAATGCTGCACATCCTCAAACAGAAGAGACGGCCAATGAAAGTCATACAAATACCAACCAATCAAGGAAAAAAGTAGTTTCTGTTATTGAAAACATTTATTGGAAGGAACTTGGAATTCTTGTATCTGTGTGGATCTTGATACTTGCACTACAGATAGGAAAAAATTACACCACAAATTGCTCAGCATTATATTGGGCATTGAATCTACTACAGGTCCCTATCACTGTAGGAACAACTGTATACGAGGCTGTGCTTCTATACAAAGGGAAGAGAAAGATAGCATCAAAGGGAGATCAACAAACACGTTGGCGTGTACATCAATTGATTCTATATTGCACGTGTGGCATAATTGCTGGCATAATTGGTGGCTTGCTTGGCCTTGGTGGAGGATTCATCTTGGGGCCACTTTTCATTGGACTAGGAATTCACCCTCAGGTGTCAAGTGCTACATCCACTTTTGCGATGACATTTTCTGCATCTATGTCCGTTGTGGAATATTATCTTCTCAAGCGTTTCCCTATTCCTTATGCACTTTACTTTGTAGCTGTAGCCACTGCTGCTGCACTGGTTGGGCAGCATTTGGTGAGAAAGGTTATTGCTATACTGGGGAGAACGTCTCTGATCATTTTCATCCTCGCACTCACAGTTTTTGTGAGTGGAATATCACTAGGTGGAGTAGGCATAGCAAAACTGATTGAAAAGAAGGTGCAGATGAAGTTTGAAAACCTTTGCTCGTACAGGGTTAGAAATTAAAGATGGAGATGTGTAGTTTCTATTTGTGGTTTTGTGTTTTCAGGGATTGTATTAAGAAATTTATCCTTGTTTTTAACCGGAATTAGTTTACCTGATTGATTATTCAGAAAAAATGTATGACTATTTTAAAGCTGCATTAACATGTAAGTCTAATTTATATGCTTTTGTTTCACGGAATGATATTAAATTCTCAGGAATCATATTTCCAAAAATCATATGACTAGGAATGTTATTCTCGGGTATATTTAAAGACGTGTAAGTCTAATTTATATACTTTTTTTTTATCA

Coding sequences of Glyma08g12890

Limit To All Plant Sequences

>Glyma08g12890.1   sequence type=CDS   gene model=Glyma08g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGCATGGATCCAAAAGGTGGGCTGTGAAATGGGTTGCTGAAAAGGTTCTGGTTGCTTTTCTTCTTGTTTCAGTCTATGTTGCTTCTTCTCAGCAAAATACAGACCAGAAAACAATCTCATCAGCATCCAATGAGACGAAAGGGGTTGATACTAAAGCTCATCATGCTGAGGGTTTTTACAAACACACTTGGCCGGAGATGAAATTTGGGTGGAAAATAATAGTGGGCAGCATAATTGGATTCCTAGGATCAGCATTTGGGACTGTGGGAGGTGTTGGTGGGGGTGGCATCTTTGTGCCCATGCTTACCCTTATTATCGGATTCGATGCAAGATCAGCAACAGCAATATCAAAATGCATGATTACGGGTGGAGCAGGAGCAACTATTTTCTACAATCTGAAGCAGAGGCACCCAACTCTTGACATGCCTGTGATTGACTATGATCTAGCACTTCTTTTTCAACCAATGTTGATGCTTGGAATCAGTATAGGAGTTGCTTTCAATGTGATTTTTCCTGACTGGATGCTAACAGCTTTGTTAATAGTAGTTTTCATAGGCCTTTCATTCAATGCATTCTTTAAGGGTGTCAAAACCTGGAAAAAAGAAACCATTGTTAACAAGGAAGCTAGGCAGAATGTACGGTTAAATGATACTGAAAGAACCGGTAATGCTGCACATCCTCAAACAGAAGAGACGGCCAATGAAAGTCATACAAATACCAACCAATCAAGGAAAAAAGTTTCTGTTATTGAAAACATTTATTGGAAGGAACTTGGAATTCTTGTATCTGTGTGGATCTTGATACTTGCACTACAGATAGGAAAAAATTACACCACAAATTGCTCAGCATTATATTGGGCATTGAATCTACTACAGGTCCCTATCACTGTAGGAACAACTGTATACGAGGCTGTGCTTCTATACAAAGGGAAGAGAAAGATAGCATCAAAGGGAGATCAACAAACACGTTGGCGTGTACATCAATTGATTCTATATTGCACGTGTGGCATAATTGCTGGCATAATTGGTGGCTTGCTTGGCCTTGGTGGAGGATTCATCTTGGGGCCACTTTTCATTGGACTAGGAATTCACCCTCAGGTGTCAAGTGCTACATCCACTTTTGCGATGACATTTTCTGCATCTATGTCCGTTGTGGAATATTATCTTCTCAAGCGTTTCCCTATTCCTTATGCACTTTACTTTGTAGCTGTAGCCACTGCTGCTGCACTGGTTGGGCAGCATTTGGTGAGAAAGGTTATTGCTATACTGGGGAGAACGTCTCTGATCATTTTCATCCTCGCACTCACAGTTTTTGTGAGTGGAATATCACTAGGTGGAGTAGGCATAGCAAAACTGATTGAAAAGAAGGTGCAGATGAAGTTTGAAAACCTTTGCTCGTACAGGGTTAGAAATTAA

>Glyma08g12890.2   sequence type=CDS   gene model=Glyma08g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGCATGGATCCAAAAGGTGGGCTGTGAAATGGGTTGCTGAAAAGGTTCTGGTTGCTTTTCTTCTTGTTTCAGTCTATGTTGCTTCTTCTCAGCAAAATACAGACCAGAAAACAATCTCATCAGCATCCAATGAGACGAAAGGGGTTGATACTAAAGCTCATCATGCTGAGGGTTTTTACAAACACACTTGGCCGGAGATGAAATTTGGGTGGAAAATAATAGTGGGCAGCATAATTGGATTCCTAGGATCAGCATTTGGGACTGTGGGAGGTGTTGGTGGGGGTGGCATCTTTGTGCCCATGCTTACCCTTATTATCGGATTCGATGCAAGATCAGCAACAGCAATATCAAAATGCATGATTACGGGTGGAGCAGGAGCAACTATTTTCTACAATCTGAAGCAGAGGCACCCAACTCTTGACATGCCTGTGATTGACTATGATCTAGCACTTCTTTTTCAACCAATGTTGATGCTTGGAATCAGTATAGGAGTTGCTTTCAATGTGATTTTTCCTGACTGGATGCTAACAGCTTTGTTAATAGTAGTTTTCATAGGCCTTTCATTCAATGCATTCTTTAAGGGTGTCAAAACCTGGAAAAAAGAAACCATTGTTAACAAGGAAGCTAGGCAGAATGTACGGTTAAATGATACTGAAAGAACCGGTAATGCTGCACATCCTCAAACAGAAGAGACGGCCAATGAAAGTCATACAAATACCAACCAATCAAGGAAAAAAGTAGTTTCTGTTATTGAAAACATTTATTGGAAGGAACTTGGAATTCTTGTATCTGTGTGGATCTTGATACTTGCACTACAGATAGGAAAAAATTACACCACAAATTGCTCAGCATTATATTGGGCATTGAATCTACTACAGGTCCCTATCACTGTAGGAACAACTGTATACGAGGCTGTGCTTCTATACAAAGGGAAGAGAAAGATAGCATCAAAGGGAGATCAACAAACACGTTGGCGTGTACATCAATTGATTCTATATTGCACGTGTGGCATAATTGCTGGCATAATTGGTGGCTTGCTTGGCCTTGGTGGAGGATTCATCTTGGGGCCACTTTTCATTGGACTAGGAATTCACCCTCAGGTGTCAAGTGCTACATCCACTTTTGCGATGACATTTTCTGCATCTATGTCCGTTGTGGAATATTATCTTCTCAAGCGTTTCCCTATTCCTTATGCACTTTACTTTGTAGCTGTAGCCACTGCTGCTGCACTGGTTGGGCAGCATTTGGTGAGAAAGGTTATTGCTATACTGGGGAGAACGTCTCTGATCATTTTCATCCTCGCACTCACAGTTTTTGTGAGTGGAATATCACTAGGTGGAGTAGGCATAGCAAAACTGATTGAAAAGAAGGTGCAGATGAAGTTTGAAAACCTTTGCTCGTACAGGGTTAGAAATTAA

Predicted protein sequences of Glyma08g12890

Limit To All Plant Sequences

>Glyma08g12890.1   sequence type=predicted peptide   gene model=Glyma08g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVHGSKRWAVKWVAEKVLVAFLLVSVYVASSQQNTDQKTISSASNETKGVDTKAHHAEGFYKHTWPEMKFGWKIIVGSIIGFLGSAFGTVGGVGGGGIFVPMLTLIIGFDARSATAISKCMITGGAGATIFYNLKQRHPTLDMPVIDYDLALLFQPMLMLGISIGVAFNVIFPDWMLTALLIVVFIGLSFNAFFKGVKTWKKETIVNKEARQNVRLNDTERTGNAAHPQTEETANESHTNTNQSRKKVSVIENIYWKELGILVSVWILILALQIGKNYTTNCSALYWALNLLQVPITVGTTVYEAVLLYKGKRKIASKGDQQTRWRVHQLILYCTCGIIAGIIGGLLGLGGGFILGPLFIGLGIHPQVSSATSTFAMTFSASMSVVEYYLLKRFPIPYALYFVAVATAAALVGQHLVRKVIAILGRTSLIIFILALTVFVSGISLGGVGIAKLIEKKVQMKFENLCSYRVRN*

>Glyma08g12890.2   sequence type=predicted peptide   gene model=Glyma08g12890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVHGSKRWAVKWVAEKVLVAFLLVSVYVASSQQNTDQKTISSASNETKGVDTKAHHAEGFYKHTWPEMKFGWKIIVGSIIGFLGSAFGTVGGVGGGGIFVPMLTLIIGFDARSATAISKCMITGGAGATIFYNLKQRHPTLDMPVIDYDLALLFQPMLMLGISIGVAFNVIFPDWMLTALLIVVFIGLSFNAFFKGVKTWKKETIVNKEARQNVRLNDTERTGNAAHPQTEETANESHTNTNQSRKKVVSVIENIYWKELGILVSVWILILALQIGKNYTTNCSALYWALNLLQVPITVGTTVYEAVLLYKGKRKIASKGDQQTRWRVHQLILYCTCGIIAGIIGGLLGLGGGFILGPLFIGLGIHPQVSSATSTFAMTFSASMSVVEYYLLKRFPIPYALYFVAVATAAALVGQHLVRKVIAILGRTSLIIFILALTVFVSGISLGGVGIAKLIEKKVQMKFENLCSYRVRN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain