SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G46420 | AT | Annotation by Michelle Graham. TAIR10: 16S rRNA processing protein RimM family | chr5:18829999-18832893 FORWARD LENGTH=653 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0042254 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0051607 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to virus | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity | SoyBase | N/A | ISS |
| GO:0043022 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribosome binding | SoyBase | N/A | ISS |
| KOG2388 | KOG | UDP-N-acetylglucosamine pyrophosphorylase | JGI | ISS | |
| PTHR11952 | Panther | UDP- GLUCOSE PYROPHOSPHORYLASE | JGI | ISS | |
| PF01704 | PFAM | UTP--glucose-1-phosphate uridylyltransferase | JGI | ISS | |
| PF01782 | PFAM | RimM N-terminal domain | JGI | ISS | |
| PF05239 | PFAM | PRC-barrel domain | JGI | ISS | |
| UniRef100_G7L811 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosome maturation factor rimM n=1 Tax=Medicago truncatula RepID=G7L811_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KSK3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSK3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g12850 not represented in the dataset |
Glyma08g12850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g29740 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g121900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g12850.1 sequence type=CDS gene model=Glyma08g12850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGATAGAGGCACTGCCCCCGGCTCTCCAACGCCCGTTTCAGCCTCCACTTTCTCTTGGATTCCCTTTCAAACCTTCTTTTTTAACTCCAGCCACACACGCCCCTTCGCACTTCAATACATATTCACGTTTTCAGCATTCAGTTAAGTTTCGTCGCTCTTTTGCAACGGTTACAGCGACCACCGAGAAGGTTGTTATTGACGACAGCGACACCACCAACGACGAACCGGGCTTCGTTAACATTGGCTACATATCGAGTGTTCATGGAATTCAGGGCGAGATTCGCGTCAAGCCAGCCACCGATTTTCCTCAACTGCGCTTTTCCACTCCTGGAAGAAGATGGTTGAAGAGCAAGGTTTTGGGTAGAGAAAGTGTTCAAGAAGTTGAGCTGGAGGAAGGTAGAGAGCACCCTGCACTTAAGAGTTGGATACTCAAATTCAGAGGAATTGACACAGTGGACCAGGCTAAGAAGCTTATTGGTGCTACCTTGCTCGTGGTGGATGAAGACAGGCCGGAATTAGAGGAGGGTGAATTTTACACACATGATCTGATAGGGATGAAAGTTTTTATGAAGGAAAATGGAAAACTTGTGGGAACTGTCATGAATGTTTTCAATAGTGGAGCCAATGACCTACTACAAATTGTACTTGATTCATCTTTTGATATGCTTGACAAAAGTGGCAAGTCAAGGTCAGCAGAAATAGATGCATCTGATCAGCTTGTTTTGGTACCTTTTGTTGAAGCCATTGTTCCAGATGTTGATATGAAAAGAAGACAAATGCATATTACTCCGCCCAAGGGACTCCTGGAATTAAATTTACGATTTGATGATAGGTCCAAAAAAGAAAGGCGCCAACTTGAATGGAAAGAAAAGAAAAAGTTTCAAAAGCGTCTCATAGCAGCAAAAAAGAAACTCATTGAAATGGAGCAAAAACACATATTTCATGGATTTCAATATGGTGAGAAAGATCAATGGAGCTCGCTTAGTGATCAGATTGTTGGTGTAAATTCCAAATTGCTCCAGGAGGCTTTACAAAGTCTTGAGCGGCCAGCAAAGAGATGGAAAGTTGCTGAGTTGGTCGGTGCCATAGAAGCAAAGCTTATAAATTCTATCCAAATATCAGAGGAATATTTTTTAAATGGAGGTAAAAATAAGTTGTTTAGAGATATGCAAGAGAAGGGACTTGAGCTCATGTCTAAGGGGAAAATGGCTATTGTCTTTCTCTTGAATGACAAAGAGCATCAGGGGAGCATTTCTGACTCTAACAAGGTTGAAAATGAAGCAATTGACACTTCGGTACTTCACATGTTTCAAAAGGTCAAAGATCATGTTTCTGTGCCTTTAATTTTGGTTTCCTCAGCCCAACAAATTCAGTCTTTTAGGAATCTGTTTACAAGCAACAATTACTTCGCATTTGACTCTGAAAAGGTATGGTTTTTGGAGGAAGAGAAGCTGCCAGTAATTAGCAGTTTGCCCAAGGGACAGAACAAATATAAGATTTTAATGAAATCACCTTGGGAAATACTCCAATCTCCAGTTGGATCTGGGGGACTTATTAGCTTGTTTTCAAACCATAGTATTGCAGATAATCTTATTGACATGGGTGTTGAGTACATTGAGGTTTGCTGCACAAGTGAAAAAATGGCCGGTGGAAACTCTCTACTTCTTGGGTTGATTAATTCACGGGAAGCCAAGATTGGGATACAAATTTCGCCTAAAATCACTGATTCGGAAGAAAACTTTGACTTGATATTCTCGATGGACTTTGTAAAGAAGTTAACGAAGCAAAGCAACAAACTCCAATTTGATGCAATCCCAAAGGCACATTCCTTTGTTGAGAAAGTTGACAAAGAATGGGTTACTCTCACCTCGTCCACCCCCAATTCATATGAGCTCTCTTGTAGCATATATAGTTCCTTAAACGCATGTTCGTTGGATAAGGTTTGTATAGTGGAGGTTAGAGAATAA
>Glyma08g12850.1 sequence type=predicted peptide gene model=Glyma08g12850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQIEALPPALQRPFQPPLSLGFPFKPSFLTPATHAPSHFNTYSRFQHSVKFRRSFATVTATTEKVVIDDSDTTNDEPGFVNIGYISSVHGIQGEIRVKPATDFPQLRFSTPGRRWLKSKVLGRESVQEVELEEGREHPALKSWILKFRGIDTVDQAKKLIGATLLVVDEDRPELEEGEFYTHDLIGMKVFMKENGKLVGTVMNVFNSGANDLLQIVLDSSFDMLDKSGKSRSAEIDASDQLVLVPFVEAIVPDVDMKRRQMHITPPKGLLELNLRFDDRSKKERRQLEWKEKKKFQKRLIAAKKKLIEMEQKHIFHGFQYGEKDQWSSLSDQIVGVNSKLLQEALQSLERPAKRWKVAELVGAIEAKLINSIQISEEYFLNGGKNKLFRDMQEKGLELMSKGKMAIVFLLNDKEHQGSISDSNKVENEAIDTSVLHMFQKVKDHVSVPLILVSSAQQIQSFRNLFTSNNYFAFDSEKVWFLEEEKLPVISSLPKGQNKYKILMKSPWEILQSPVGSGGLISLFSNHSIADNLIDMGVEYIEVCCTSEKMAGGNSLLLGLINSREAKIGIQISPKITDSEENFDLIFSMDFVKKLTKQSNKLQFDAIPKAHSFVEKVDKEWVTLTSSTPNSYELSCSIYSSLNACSLDKVCIVEVRE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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