Glyma08g12780 - SoyBase

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Report for Sequence Feature Glyma08g12780

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9356246
stop:	9359145
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18630	AT	Annotation by Michelle Graham. TAIR10: uracil dna glycosylase \| chr3:6411325-6413002 REVERSE LENGTH=330	SoyBase	E_val: 3.00E-46	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006284	GO-bp	Annotation by Michelle Graham. GO Biological Process: base-excision repair	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004844	GO-mf	Annotation by Michelle Graham. GO Molecular Function: uracil DNA N-glycosylase activity	SoyBase	N/A	ISS
PTHR11264	Panther	URACIL DNA GLYCOSYLASE	JGI		ISS
PF03167	PFAM	Uracil DNA glycosylase superfamily	JGI		ISS
UniRef100_I1KSJ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSJ5_SOYBN	SoyBase	E_val: 2.00E-110	ISS
UniRef100_I1LPL1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Uracil-DNA glycosylase n=1 Tax=Glycine max RepID=I1LPL1_SOYBN	SoyBase	E_val: 2.00E-52	ISS

Expression Patterns of Glyma08g12780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g12780 not represented in the dataset	Glyma08g12780 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g12780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g121000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g12780

Limit To All Plant Sequences

>Glyma08g12780.2   sequence type=CDS   gene model=Glyma08g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCTTTCATTCTCAGTCCCTGAAGGAGTCAAAGTCCCTTCCAGTTTGGTAAATATATTTAAGGAGCTTCACCAAGACCTTGGCTGCTCTATTCCAACTCATGGAAATCTTCAAAAATGGGCTTTGCAGGGTGTTCTCTTACTCAATGCTGTTCTCACAGTCAGGAAGCATCATGCGAATTCTCATGCCAAAAAAGGCTGGGAACAATTTACTGATGGTATTATCAAAGACAATCTCACAGAAGATGGAAGAGTTGTGTTTCTGTTGTGGGGAAACAATGCTCGGGAGAAATCTAGGAACCATCGGGTTTTTCGGGACCAAATGTGGAGTGAAGAGTTTCTAGCTCGTCTAAAGAAGCTGGAAGAAGCATGGAAAGCTGCTAAAAATGTTGGTGACAAATTTCCGGCCAATACCGTCTACAACAAAAGCAAAGAGCCAATGAAATGGATTCCGGCAGGGGAATATTGA

Predicted protein sequences of Glyma08g12780

Limit To All Plant Sequences

>Glyma08g12780.2   sequence type=predicted peptide   gene model=Glyma08g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLSFSVPEGVKVPSSLVNIFKELHQDLGCSIPTHGNLQKWALQGVLLLNAVLTVRKHHANSHAKKGWEQFTDGIIKDNLTEDGRVVFLLWGNNAREKSRNHRVFRDQMWSEEFLARLKKLEEAWKAAKNVGDKFPANTVYNKSKEPMKWIPAGEY*

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