Glyma08g12720 - SoyBase

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Report for Sequence Feature Glyma08g12720

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9294315
stop:	9298557
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G59740	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr1:21968227-21972312 FORWARD LENGTH=591	SoyBase	E_val: 1.00E-154	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG1237	KOG	H+/oligopeptide symporter	JGI		ISS
PTHR11654	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PTHR11654:SF37	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PF00854	PFAM	POT family	JGI		ISS
UniRef100_G7L7C2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nitrate/chlorate transporter n=1 Tax=Medicago truncatula RepID=G7L7C2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KSJ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KSJ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g12720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12720

Paralog	Evidence	Comments
Glyma05g29550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g120500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g12720

Limit To All Plant Sequences

>Glyma08g12720.1   sequence type=CDS   gene model=Glyma08g12720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACTCATGTTGTTGATGGGAGTGTGGAGTGGATGCAGGAGGAGAAAGCAGAACTGGTTGTTGATGGAAAAGTTGATTGGAAAGGAAGAAGAGCTTTGAAACACAAACATGGGGGGATGAAAGTTTCATTGCTCATACTTGGCGCATTTGCTGTCGAGAACATGGCAACTCTATCACTAGCAGTGAACTTTGTGTCATACTTCACTGGAATTATGCATTATGAATTAGCAGATGCAGCTAACATAGTAACCGATTACATGGGTGTTAGTTACATGCTTTCCATTGTTGTGGCCGTTGTTGCTGACACTTGGATTGGCAGATACAAATCCGTTGTTATTTCTGGATTCATTGAATCTTTGGGACTTGCATTGCTTACGGTACAGGCACACATGGGTAGCCTGACACCACCCATTTGCAACGTGTATGTGAAAGATGCACATTGTGCAAAGCTTAGTGGGAAGCAAGAAGCATTTTTCTTCATTAGCCTCTACTTGTTGGCCTTTGGCAGTGCAGGTTTGAAGGCTTCCTTGCCATCACATGGTGCTGATCAATTTGATGAAAGAGACCCCAAAGAAGCAATGCAAATGTCAAGCTTCTTCAATGGTCTCTTGTTAGCAGTTTGCATTGGTGGTGCAGTGAGCTTAACGTTTAATGTATATATACAAGACCGCTATGGATGGGATTGGGGCTTTGGAATCTCCACTTTTGCTATTGTTTTGGGAACCATACTCTTTGCCTTTGGATTGCCACTATACCGAATTCATGTTGCACATACAAAAAACGGCATCATTGAGATCATACAGGTCTATGTTGCTGCAATTCGCAACAGAAACCTTTCCCTTCCTGAAGATCCTATAGAACTATACGAGATTGAACAGGACAAAGAAGCTGCAATGGAAATAGAGCATCAACCTCATAGGGATATTTTCAGGTTTTTGGACAAAGCAGCTATCCAAAGAAAATCTGACGTGCAACCGGAGAACCAAGAGACTCCAAACCCATGGAAACTATGCAGAGTTACCCAAGTAGAAAATGCAAAAATCATTCTAAGCATGCTCCCTATATTCTGTTGCTCAATCATAATGACCCTTTGCTTAGCACAACTCCAAACCTTTTCTGTTCAGCAAGGCTCCACCATGGACACCAGGATCACAAAACATTTTAACATCCCTCCTGCATCCCTCCCAATCATCCCAGTTGGCTTCTTAATCATTATAGTCCCTTTCTATGATCGCATTTGTGTGCCTTTTCTTCGTAAATTCACTGGTATTCCCACCGGCATTACACACTTGCAGCGCATAGGAGTAGGCCTAATACTCTCTTGCATCTCCATGGCAATTGCAGCAATCATAGAGGTTAAAAGAAAAGGAGTTGCAAGAGACCACAACATGCTAGATGCCTTGCCAGTAAAACAGCCATTGCCATTGAGTATATTCTGGCTTGCTTTTCAGTATTTTATATTTGGCATAGCTGACATGTTTACCTACGTGGGGCTTCTTGAGTTTTTCTATTCAGAAGCACCAAAAGGCCTAAAATCCACATCAACATGCTTCCTTTGGTGCTCTATGGCCCTTGGCTATTTTCTAAGTTCCATATTGGTGAAAATTGTGAACAGTGCGACCAAGAATATCACTTCAAGTGGAGGTTGGTTAGCAGGGAACAATATTAACAGAAACCATCTGAACCTGTTCTACTTGTTCCTCTCAATATTGAGCTTGATCAACTTCTTTGTCTATTTGTTCGTTTCAAAGAGGTACAAGTACAGGCCTCAACACCCTGCAGTTACCGGTGGCAATTCAGAGGAGTGA

Predicted protein sequences of Glyma08g12720

Limit To All Plant Sequences

>Glyma08g12720.1   sequence type=predicted peptide   gene model=Glyma08g12720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTHVVDGSVEWMQEEKAELVVDGKVDWKGRRALKHKHGGMKVSLLILGAFAVENMATLSLAVNFVSYFTGIMHYELADAANIVTDYMGVSYMLSIVVAVVADTWIGRYKSVVISGFIESLGLALLTVQAHMGSLTPPICNVYVKDAHCAKLSGKQEAFFFISLYLLAFGSAGLKASLPSHGADQFDERDPKEAMQMSSFFNGLLLAVCIGGAVSLTFNVYIQDRYGWDWGFGISTFAIVLGTILFAFGLPLYRIHVAHTKNGIIEIIQVYVAAIRNRNLSLPEDPIELYEIEQDKEAAMEIEHQPHRDIFRFLDKAAIQRKSDVQPENQETPNPWKLCRVTQVENAKIILSMLPIFCCSIIMTLCLAQLQTFSVQQGSTMDTRITKHFNIPPASLPIIPVGFLIIIVPFYDRICVPFLRKFTGIPTGITHLQRIGVGLILSCISMAIAAIIEVKRKGVARDHNMLDALPVKQPLPLSIFWLAFQYFIFGIADMFTYVGLLEFFYSEAPKGLKSTSTCFLWCSMALGYFLSSILVKIVNSATKNITSSGGWLAGNNINRNHLNLFYLFLSILSLINFFVYLFVSKRYKYRPQHPAVTGGNSEE*

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