Glyma08g12700 - SoyBase

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Report for Sequence Feature Glyma08g12700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9281070
stop:	9285992
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29750	AT	Annotation by Michelle Graham. TAIR10: receptor-like kinase in flowers 1 \| chr1:10414071-10419813 REVERSE LENGTH=1006	SoyBase	E_val: 4.00E-131	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004702	GO-mf	Annotation by Michelle Graham. GO Molecular Function: receptor signaling protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF698	Panther		JGI		ISS
PF11721	PFAM	Di-glucose binding within endoplasmic reticulum	JGI		ISS
UniRef100_G7L7B9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-binding/protein serine/threonine kinase n=1 Tax=Medicago truncatula RepID=G7L7B9_MEDTR	SoyBase	E_val: 9.00E-147	ISS
UniRef100_I1KSI8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSI8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g12700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g12700 not represented in the dataset	Glyma08g12700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g12700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma08g12700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g12700

Limit To All Plant Sequences

>Glyma08g12700.3   sequence type=transcript   gene model=Glyma08g12700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTGACATTTGCTAAGTTTCAGAATTTGACAGATTTCAGGATAAGTGATAACAGTTTCAACGGAGAAATACCTAGCTTCATACAGAATTGGAAATTACTTCAAAGATTAGAAATGCATGCAAGTGGACTGGAGGGACCTACCCCATCAAATATATCTCTTTTAAGTAATTTAAATCAGTTGAGGATTGGTGACATAAATGGTCCAAGTCAGGACTTTCCTATGTTAAGAAACATGACAGGAATGGCAATATTGGTTCTGAGGAATTGTCATATTACTGGAGAGCTTCCTATTTACTTCTGGAGTATGAAGGATTTGAATATGTTGTAAGTAGAAATTTGAATTTTTTGTGTCAGTTTTCTTTTTAATTCTTTTATTATTGAAGCAAACACAAATACCATATATCTAGAAAACAACACATGGATGATTGGTTCTATTCTATTCCCCTGTAACTATAACACACATATTTAATATGCTACTGCCCCTAACTTCCTGCCCTAAACTGTAAGCAGCATCACAGTTACTATTGAAAATATTCTAAAAATAATT

Coding sequences of Glyma08g12700

Limit To All Plant Sequences

>Glyma08g12700.2   sequence type=CDS   gene model=Glyma08g12700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTTGATTTTATCATCCAATAAATTGTCTGGGAAGTTACGGGTGACATTTGCTAAGTTTCAGAATTTGACAGATTTCAGGATAAGTGATAACAGTTTCAACGGAGAAATACCTAGCTTCATACAGAATTGGAAATTACTTCAAAGATTAGAAATGCATGCAAGTGGACTGGAGGGACCTACCCCATCAAATATATCTCTTTTAAGTAATTTAAATCAGTTGAGGATTGGTGACATAAATGGTCCAAGTCAGGACTTTCCTATGTTAAGAAACATGACAGGAATGGCAATATTGGTTCTGAGGAATTGTCATATTACTGGAGAGCTTCCTATTTACTTCTGGAGTATGAAGGATTTGAATATGTTGGACGCCAGTTTCAATAAGTTGGTTGGGGAAATACCAGTCGCTGCGCATGTGGGGCATCTGAGATTTCTCTTCCTAACTGGCAACATGCTAAGTGGTAATGTACCTGAGCCAGTCTTGATGGATGGAAGCAGTGTTGACCTTTCTTACAACAATTTTATGTGGCAAGAACCAGATCAACCTGCTTGTAGAGATGACCTAAATCTAAACTTAAACTTGTTTCGGAGCTTCTCAGGGACCAAATTACAGGGGATTCTTCCATGTTCAAAGATCTCCAATTGTCCAGCATATTCACATTGTTTTCATGTTAATTGTGGTGGAAAGAATGTAAAGGTGATGGAAAATGATGAAAATATTCACTATGTAGGAGATGGAGGTGTGTTAGGTAGCGGTGCTGCTAATATTTCATTGATCATGAAAATCACTGGGGATTTCTTGGATGATGGTGATCAATTAAATTCACGTTACCTTAGGTCTTTGCCATCTTCAGATTTACCTGAGCTATATAAAACAGCTCATGTTACTCCAATTTCGCTTACTTATTTTCACTATTGCTTGGAAAATGGGAAATATACTGTAAAACTCCACTTCGCAGAAATACAATTTTCAAATGATAACACATTTGGAAGTCTTGGAAAGCGCTTATTTGATATTTATGTTCAGGAAATATTAATTTGGAAGGATTTTAATATTGAATGTGAAACACATGCTGCTCAAAAACCATATATACTGTCCTTACATGATGTCAATGTAACAGAATATTCTGGAGATTCAATTCTACTGGGCTGGCAAGGGGACTACAAGGATTCCTGTTGGTGGAGTTTATGGTCCCCTCATATCAGCTTTCTCTATTGTTTCTGGTGA

>Glyma08g12700.3   sequence type=CDS   gene model=Glyma08g12700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGCAAGTGGACTGGAGGGACCTACCCCATCAAATATATCTCTTTTAAGTAATTTAAATCAGTTGAGGATTGGTGACATAAATGGTCCAAGTCAGGACTTTCCTATGTTAAGAAACATGACAGGAATGGCAATATTGGTTCTGAGGAATTGTCATATTACTGGAGAGCTTCCTATTTACTTCTGGAGTATGAAGGATTTGAATATGTTGTAA

Predicted protein sequences of Glyma08g12700

Limit To All Plant Sequences

>Glyma08g12700.2   sequence type=predicted peptide   gene model=Glyma08g12700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLILSSNKLSGKLRVTFAKFQNLTDFRISDNSFNGEIPSFIQNWKLLQRLEMHASGLEGPTPSNISLLSNLNQLRIGDINGPSQDFPMLRNMTGMAILVLRNCHITGELPIYFWSMKDLNMLDASFNKLVGEIPVAAHVGHLRFLFLTGNMLSGNVPEPVLMDGSSVDLSYNNFMWQEPDQPACRDDLNLNLNLFRSFSGTKLQGILPCSKISNCPAYSHCFHVNCGGKNVKVMENDENIHYVGDGGVLGSGAANISLIMKITGDFLDDGDQLNSRYLRSLPSSDLPELYKTAHVTPISLTYFHYCLENGKYTVKLHFAEIQFSNDNTFGSLGKRLFDIYVQEILIWKDFNIECETHAAQKPYILSLHDVNVTEYSGDSILLGWQGDYKDSCWWSLWSPHISFLYCFW*

>Glyma08g12700.3   sequence type=predicted peptide   gene model=Glyma08g12700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHASGLEGPTPSNISLLSNLNQLRIGDINGPSQDFPMLRNMTGMAILVLRNCHITGELPIYFWSMKDLNML*

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