Glyma08g12570 - SoyBase

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Report for Sequence Feature Glyma08g12570

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9205408
stop:	9208963
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29330	AT	Annotation by Michelle Graham. TAIR10: ER lumen protein retaining receptor family protein \| chr1:10258580-10260906 REVERSE LENGTH=215	SoyBase	E_val: 2.00E-129	ISS
GO:0006621	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein retention in ER lumen	SoyBase	N/A	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005801	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cis-Golgi network	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005046	GO-mf	Annotation by Michelle Graham. GO Molecular Function: KDEL sequence binding	SoyBase	N/A	ISS
GO:0046923	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ER retention sequence binding	SoyBase	N/A	ISS
KOG3106	KOG	ER lumen protein retaining receptor	JGI		ISS
PTHR10585	Panther	ER LUMEN PROTEIN RETAINING RECEPTOR-RELATED	JGI		ISS
PF00810	PFAM	ER lumen protein retaining receptor	JGI		ISS
UniRef100_I1KSH4	UniRef	Annotation by Michelle Graham. Best UniRef hit: ER lumen protein retaining receptor n=1 Tax=Glycine max RepID=I1KSH4_SOYBN	SoyBase	E_val: 3.00E-155	ISS
UniRef100_I1KSH4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ER lumen protein retaining receptor n=1 Tax=Glycine max RepID=I1KSH4_SOYBN	SoyBase	E_val: 3.00E-155	ISS

Expression Patterns of Glyma08g12570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12570

Paralog	Evidence	Comments
Glyma05g29410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g119300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g12570

Limit To All Plant Sequences

>Glyma08g12570.2   sequence type=transcript   gene model=Glyma08g12570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAAAATAAAAAAACAAAAATCTACACGCACACACCCAAGCACACCATTTTCGATTCCTTTTCAATTTCCATTACGTCCCCTCTTTCCGCTTTTGAACGTTTTCTCTGTGTGTCTCGCTAGGGCAAAAACCATGAACATCTTCAGGCTCGCCGGTGACATGACCCATCTTTTCAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGTTCAGGGATTTCTCGCAAGACTCAAGAGCTGTACGCGATTGTGTTCGTGGCACGCTATTTGGATCTGTTCACGGACTTCATATCCGTTTACAACACCTTCATGAAGGTGGTGTTCATTGCAAGCTCCTTAGCCATTTTTTGGTGCATGCGTTTTCATCCCATGGTCAGGAGAAGCTACGATAGGGACCTAGACACTTTTCGCCACTATTTCCTTGTTGGGGCAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCTCAGTTGGTTTTGTTGCAAAGAAGTGGAAATGTGGACAATTTGACTGTGCAATATGTATTCTTTCTTGGGTATGCACACTTCTGTTGAGTTCTCTTTTGAAGATCTGCCTTTATGTTTTGGTTGCTTACTCTATGTTCTTTTTTATGCTGATCATTAGCAGATAGTCCTTTCTGAGTTATTGAGGTATCTTCTAGTGGCAATGGTATACTAATAATATTTGCTATCTTGAAATAGCTAAGAAATTAAACTCCTTGAAAGTGATG

Coding sequences of Glyma08g12570

Limit To All Plant Sequences

>Glyma08g12570.1   sequence type=CDS   gene model=Glyma08g12570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATCTTCAGGCTCGCCGGTGACATGACCCATCTTTTCAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGTTCAGGGATTTCTCGCAAGACTCAAGAGCTGTACGCGATTGTGTTCGTGGCACGCTATTTGGATCTGTTCACGGACTTCATATCCGTTTACAACACCTTCATGAAGGTGGTGTTCATTGCAAGCTCCTTAGCCATTTTTTGGTGCATGCGTTTTCATCCCATGGTCAGGAGAAGCTACGATAGGGACCTAGACACTTTTCGCCACTATTTCCTTGTTGGGGCAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCTCAGTTGGTTTTGTTGCAAAGAAGTGGAAATGTGGACAATTTGACTGTGCAATATGTATTCTTTCTTGGTGCATATCGTGCATTTTACATCCTGAACTGGATATACCGCTATATGACTGAGCCACGTTTTACTAGATGGATAGCCTGTGCCTCAGGTGTTGTTCAGACAGCTTTGTATGCAGATTTCTTCTACTATTATTTCATCAGCTGGAAGAACAATTCAAAACTGAAGTTGCCTGCCTGA

>Glyma08g12570.2   sequence type=CDS   gene model=Glyma08g12570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATCTTCAGGCTCGCCGGTGACATGACCCATCTTTTCAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCATGTTCAGGGATTTCTCGCAAGACTCAAGAGCTGTACGCGATTGTGTTCGTGGCACGCTATTTGGATCTGTTCACGGACTTCATATCCGTTTACAACACCTTCATGAAGGTGGTGTTCATTGCAAGCTCCTTAGCCATTTTTTGGTGCATGCGTTTTCATCCCATGGTCAGGAGAAGCTACGATAGGGACCTAGACACTTTTCGCCACTATTTCCTTGTTGGGGCAAGCTTTGCTTTGGCACTCATCTTGCATGAAAAGTTCACTGTTCAAGAGATTTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATATTACCTCAGTTGGTTTTGTTGCAAAGAAGTGGAAATGTGGACAATTTGACTGTGCAATATGTATTCTTTCTTGGGTATGCACACTTCTGTTGA

Predicted protein sequences of Glyma08g12570

Limit To All Plant Sequences

>Glyma08g12570.1   sequence type=predicted peptide   gene model=Glyma08g12570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNIFRLAGDMTHLFSILVLLLKIYATKSCSGISRKTQELYAIVFVARYLDLFTDFISVYNTFMKVVFIASSLAIFWCMRFHPMVRRSYDRDLDTFRHYFLVGASFALALILHEKFTVQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTVQYVFFLGAYRAFYILNWIYRYMTEPRFTRWIACASGVVQTALYADFFYYYFISWKNNSKLKLPA*

>Glyma08g12570.2   sequence type=predicted peptide   gene model=Glyma08g12570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNIFRLAGDMTHLFSILVLLLKIYATKSCSGISRKTQELYAIVFVARYLDLFTDFISVYNTFMKVVFIASSLAIFWCMRFHPMVRRSYDRDLDTFRHYFLVGASFALALILHEKFTVQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTVQYVFFLGYAHFC*

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