Glyma08g12560 - SoyBase

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Report for Sequence Feature Glyma08g12560

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9199265
stop:	9203838
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12280	AT	Annotation by Michelle Graham. TAIR10: LRR and NB-ARC domains-containing disease resistance protein \| chr1:4174875-4177559 REVERSE LENGTH=894	SoyBase	E_val: 3.00E-13	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
PF00931	PFAM	NB-ARC domain	JGI		ISS
UniRef100_B9SQA5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein RFL1, putative n=1 Tax=Ricinus communis RepID=B9SQA5_RICCO	SoyBase	E_val: 1.00E-33	ISS
UniRef100_I1KSH1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KSH1_SOYBN	SoyBase	E_val: 2.00E-171	ISS

Expression Patterns of Glyma08g12560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g12560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g119200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g12560

Limit To All Plant Sequences

>Glyma08g12560.4   sequence type=transcript   gene model=Glyma08g12560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCCGGTAGTTAACTAACTAATGGATTTGGATCTCTCCTACTTCTTTTTCTCTCTTATCATTTTTATTCATTTCCTTCTTTGCTTTGATACACACTTGTCTAATGTCTAATTTGTGTTGCAAAAGGAGGAGCCATGCAAGGAACAGGGGGGCTCCACGATGCTAATGGAGACCAGCCATGCAAGGAACAGGAGGAACCATAGCAGAACCATAGCAGGAGGAGCCGTTGCAAGGAGGAGCTCGACGATGCTGTTGGAGACCAGCCGCTGCAGAACCAGCAGGTTACAGAAGAACCTAAGCGAATGCGGCGATTTTTCAAGCCGACACGGGAGTTTAATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAATGTTGTTGAAACCTTAAGTTGAAACTTGTGGAATAATTTTATGGATCAAGAGTTGGTGTTGTCCAGTCCAGCAAACTGAAAACTAGAATAATATTTTCTGCAGACGTCAGTAGCCAAATTGTGGAGTTTATGTCTTTTTTTTTTAGAGTGGAGTTTATGTCTTAAGTTTAAATTTATGGAATAATTTTGTGGATTTTATTTAGACGTTTTCTTATTATGCTGAGAAGTTTGTTTGGTTTAAGTTTTTAAAAATAAATTGTGTCTTTCT

>Glyma08g12560.5   sequence type=transcript   gene model=Glyma08g12560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCCGGTAGTTAACTAACTAATGGATTTGGATCTCTCCTACTTCTTTTTCTCTCTTATCATTTTTATTCATTTCCTTCTTTGCTTTGATACACACTTGTCTAATGTCTAATTTGTGTTGCAAAAGGAGGAGCCATGCAAGGAACAGGGGGGCTCCACGATGCTAATGGAGACCAGCCATGCAAGGAACAGGAGGAACCATAGCAGAACCATAGCAGGAGGAGCCGTTGCAAGGAGGAGCTCGACGATGCTGTTGGAGACCAGCCGCTGCAGAACCAGCAGGTTACAGAAGAACCTAAGCGAATATTTTTCAAGCCGACACGGGAGTTTAATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAATGTTGTTGAAACCTTAAGTTGAAACTTGTGGAATAATTTTATGGATCAAGAGTTGGTGTTGTCCAGTCCAGCAAACTGAAAACTAGAATAATATTTTCTGCAGACGTCAGTAGCCAAATTGTGGAGTTTATGTCTTTTTTTTTTAGAGTGGAGTTTATGTCTTAAGTTTAAATTTATGGAATAATTTTGTGGATTTTATTTAGACGTTTTCTTATTATGCTGAGAAGTTTGTTTGGTTTAAGTTTTTAAAAATAAATTGTGTCTTTCT

>Glyma08g12560.6   sequence type=transcript   gene model=Glyma08g12560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGAATTATTTATTTAAATTTTAAAAATTGAATCTCTTCCTTTCATTGCAGCGCTATAATTTTGTAACTTTTTAATTAGTATAATTATGATTTTTATGATAATTGCTATGTGATCAGTTGTTTTTTTATATATATTTTACTACCAACTAGATTTTTCAAGCCGACACGGGAGTTTAATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAATGTTGTTGAAACCTTAAGTTGAAACTTGTGGAATAATTTTATGGATCAAGAGTTGGTGTTGTCCAGTCCAGC

Coding sequences of Glyma08g12560

Limit To All Plant Sequences

>Glyma08g12560.1   sequence type=CDS   gene model=Glyma08g12560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAATGGAGACCAGCCATGCAAGGAACAGGAGGAACCATAGCAGAACCATAGCAGGAGGAGCCGTTGCAAGGAGGAGCTCGACGATGCTGTTGGAGACCAGCCGCTGCAGAACCAGCAGGTTACAGAAGAACCTAAGCGAATCGCACTACCGGTCACTCATTGATGAGCTTATTCGTGCAGGCGGCGATTTTTCAAGCCGACACGGGAGTTTAATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAA

>Glyma08g12560.4   sequence type=CDS   gene model=Glyma08g12560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAATGGAGACCAGCCATGCAAGGAACAGGAGGAACCATAGCAGAACCATAGCAGGAGGAGCCGTTGCAAGGAGGAGCTCGACGATGCTGTTGGAGACCAGCCGCTGCAGAACCAGCAGGTTACAGAAGAACCTAAGCGAATGCGGCGATTTTTCAAGCCGACACGGGAGTTTAATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAA

>Glyma08g12560.5   sequence type=CDS   gene model=Glyma08g12560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAATGGAGACCAGCCATGCAAGGAACAGGAGGAACCATAGCAGAACCATAGCAGGAGGAGCCGTTGCAAGGAGGAGCTCGACGATGCTGTTGGAGACCAGCCGCTGCAGAACCAGCAGGTTACAGAAGAACCTAAGCGAATATTTTTCAAGCCGACACGGGAGTTTAATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAA

>Glyma08g12560.6   sequence type=CDS   gene model=Glyma08g12560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAA

Predicted protein sequences of Glyma08g12560

Limit To All Plant Sequences

>Glyma08g12560.1   sequence type=predicted peptide   gene model=Glyma08g12560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLMETSHARNRRNHSRTIAGGAVARRSSTMLLETSRCRTSRLQKNLSESHYRSLIDELIRAGGDFSSRHGSLMPPESTSIILKEIMTALTQPNIGLLGLYGSSNANKENVVEKVTRRVERDGLFNVVVKTCVMKKPDLKRIQGELGNALGLQLHEKTLKERATRLCERVKMEDKILIILHDLHGQINLAKIGIPFGNDHKGCKILLVTENKEVLSHKMKTQIEFSVDEEPSSSGLIY*

>Glyma08g12560.4   sequence type=predicted peptide   gene model=Glyma08g12560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLMETSHARNRRNHSRTIAGGAVARRSSTMLLETSRCRTSRLQKNLSECGDFSSRHGSLMPPESTSIILKEIMTALTQPNIGLLGLYGSSNANKENVVEKVTRRVERDGLFNVVVKTCVMKKPDLKRIQGELGNALGLQLHEKTLKERATRLCERVKMEDKILIILHDLHGQINLAKIGIPFGNDHKGCKILLVTENKEVLSHKMKTQIEFSVDEEPSSSGLIY*

>Glyma08g12560.5   sequence type=predicted peptide   gene model=Glyma08g12560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLMETSHARNRRNHSRTIAGGAVARRSSTMLLETSRCRTSRLQKNLSEYFSSRHGSLMPPESTSIILKEIMTALTQPNIGLLGLYGSSNANKENVVEKVTRRVERDGLFNVVVKTCVMKKPDLKRIQGELGNALGLQLHEKTLKERATRLCERVKMEDKILIILHDLHGQINLAKIGIPFGNDHKGCKILLVTENKEVLSHKMKTQIEFSVDEEPSSSGLIY*

>Glyma08g12560.6   sequence type=predicted peptide   gene model=Glyma08g12560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPESTSIILKEIMTALTQPNIGLLGLYGSSNANKENVVEKVTRRVERDGLFNVVVKTCVMKKPDLKRIQGELGNALGLQLHEKTLKERATRLCERVKMEDKILIILHDLHGQINLAKIGIPFGNDHKGCKILLVTENKEVLSHKMKTQIEFSVDEEPSSSGLIY*

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