SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12280 | AT | Annotation by Michelle Graham. TAIR10: LRR and NB-ARC domains-containing disease resistance protein | chr1:4174875-4177559 REVERSE LENGTH=894 | SoyBase | E_val: 3.00E-13 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0043531 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ADP binding | SoyBase | N/A | ISS |
| PF00931 | PFAM | NB-ARC domain | JGI | ISS | |
| UniRef100_B9SQA5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein RFL1, putative n=1 Tax=Ricinus communis RepID=B9SQA5_RICCO | SoyBase | E_val: 1.00E-33 | ISS |
| UniRef100_I1KSH1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KSH1_SOYBN | SoyBase | E_val: 2.00E-171 | ISS |
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Glyma08g12560 not represented in the dataset |
Glyma08g12560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g119200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g12560.4 sequence type=transcript gene model=Glyma08g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGCCGGTAGTTAACTAACTAATGGATTTGGATCTCTCCTACTTCTTTTTCTCTCTTATCATTTTTATTCATTTCCTTCTTTGCTTTGATACACACTTGTCTAATGTCTAATTTGTGTTGCAAAAGGAGGAGCCATGCAAGGAACAGGGGGGCTCCACGATGCTAATGGAGACCAGCCATGCAAGGAACAGGAGGAACCATAGCAGAACCATAGCAGGAGGAGCCGTTGCAAGGAGGAGCTCGACGATGCTGTTGGAGACCAGCCGCTGCAGAACCAGCAGGTTACAGAAGAACCTAAGCGAATGCGGCGATTTTTCAAGCCGACACGGGAGTTTAATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAATGTTGTTGAAACCTTAAGTTGAAACTTGTGGAATAATTTTATGGATCAAGAGTTGGTGTTGTCCAGTCCAGCAAACTGAAAACTAGAATAATATTTTCTGCAGACGTCAGTAGCCAAATTGTGGAGTTTATGTCTTTTTTTTTTAGAGTGGAGTTTATGTCTTAAGTTTAAATTTATGGAATAATTTTGTGGATTTTATTTAGACGTTTTCTTATTATGCTGAGAAGTTTGTTTGGTTTAAGTTTTTAAAAATAAATTGTGTCTTTCT >Glyma08g12560.5 sequence type=transcript gene model=Glyma08g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGCCGGTAGTTAACTAACTAATGGATTTGGATCTCTCCTACTTCTTTTTCTCTCTTATCATTTTTATTCATTTCCTTCTTTGCTTTGATACACACTTGTCTAATGTCTAATTTGTGTTGCAAAAGGAGGAGCCATGCAAGGAACAGGGGGGCTCCACGATGCTAATGGAGACCAGCCATGCAAGGAACAGGAGGAACCATAGCAGAACCATAGCAGGAGGAGCCGTTGCAAGGAGGAGCTCGACGATGCTGTTGGAGACCAGCCGCTGCAGAACCAGCAGGTTACAGAAGAACCTAAGCGAATATTTTTCAAGCCGACACGGGAGTTTAATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAATGTTGTTGAAACCTTAAGTTGAAACTTGTGGAATAATTTTATGGATCAAGAGTTGGTGTTGTCCAGTCCAGCAAACTGAAAACTAGAATAATATTTTCTGCAGACGTCAGTAGCCAAATTGTGGAGTTTATGTCTTTTTTTTTTAGAGTGGAGTTTATGTCTTAAGTTTAAATTTATGGAATAATTTTGTGGATTTTATTTAGACGTTTTCTTATTATGCTGAGAAGTTTGTTTGGTTTAAGTTTTTAAAAATAAATTGTGTCTTTCT >Glyma08g12560.6 sequence type=transcript gene model=Glyma08g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTAGAATTATTTATTTAAATTTTAAAAATTGAATCTCTTCCTTTCATTGCAGCGCTATAATTTTGTAACTTTTTAATTAGTATAATTATGATTTTTATGATAATTGCTATGTGATCAGTTGTTTTTTTATATATATTTTACTACCAACTAGATTTTTCAAGCCGACACGGGAGTTTAATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAATGTTGTTGAAACCTTAAGTTGAAACTTGTGGAATAATTTTATGGATCAAGAGTTGGTGTTGTCCAGTCCAGC
>Glyma08g12560.1 sequence type=CDS gene model=Glyma08g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTAATGGAGACCAGCCATGCAAGGAACAGGAGGAACCATAGCAGAACCATAGCAGGAGGAGCCGTTGCAAGGAGGAGCTCGACGATGCTGTTGGAGACCAGCCGCTGCAGAACCAGCAGGTTACAGAAGAACCTAAGCGAATCGCACTACCGGTCACTCATTGATGAGCTTATTCGTGCAGGCGGCGATTTTTCAAGCCGACACGGGAGTTTAATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAA >Glyma08g12560.4 sequence type=CDS gene model=Glyma08g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTAATGGAGACCAGCCATGCAAGGAACAGGAGGAACCATAGCAGAACCATAGCAGGAGGAGCCGTTGCAAGGAGGAGCTCGACGATGCTGTTGGAGACCAGCCGCTGCAGAACCAGCAGGTTACAGAAGAACCTAAGCGAATGCGGCGATTTTTCAAGCCGACACGGGAGTTTAATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAA >Glyma08g12560.5 sequence type=CDS gene model=Glyma08g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTAATGGAGACCAGCCATGCAAGGAACAGGAGGAACCATAGCAGAACCATAGCAGGAGGAGCCGTTGCAAGGAGGAGCTCGACGATGCTGTTGGAGACCAGCCGCTGCAGAACCAGCAGGTTACAGAAGAACCTAAGCGAATATTTTTCAAGCCGACACGGGAGTTTAATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAA >Glyma08g12560.6 sequence type=CDS gene model=Glyma08g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCCCCTGAATCCACATCCATAATTTTGAAAGAAATAATGACGGCTCTCACACAACCAAATATTGGTCTACTTGGACTGTATGGATCGAGTAATGCGAACAAGGAAAACGTAGTGGAGAAAGTCACCAGGAGAGTTGAGAGGGACGGGCTGTTTAATGTGGTTGTGAAGACATGCGTGATGAAAAAGCCAGATTTAAAAAGAATTCAAGGAGAACTTGGGAATGCATTGGGTCTACAACTCCATGAGAAAACTCTAAAGGAAAGAGCTACCCGTTTGTGTGAGAGGGTTAAAATGGAGGACAAGATCCTTATCATTCTTCATGATCTTCACGGTCAAATCAACTTGGCCAAGATTGGAATACCCTTTGGGAATGACCACAAGGGTTGTAAAATCTTGTTAGTAACTGAGAATAAAGAGGTGTTGTCCCACAAAATGAAAACCCAAATAGAATTTTCTGTGGACGAGGAGCCGTCAAGTTCTGGTTTAATTTATTAA
>Glyma08g12560.1 sequence type=predicted peptide gene model=Glyma08g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLMETSHARNRRNHSRTIAGGAVARRSSTMLLETSRCRTSRLQKNLSESHYRSLIDELIRAGGDFSSRHGSLMPPESTSIILKEIMTALTQPNIGLLGLYGSSNANKENVVEKVTRRVERDGLFNVVVKTCVMKKPDLKRIQGELGNALGLQLHEKTLKERATRLCERVKMEDKILIILHDLHGQINLAKIGIPFGNDHKGCKILLVTENKEVLSHKMKTQIEFSVDEEPSSSGLIY* >Glyma08g12560.4 sequence type=predicted peptide gene model=Glyma08g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLMETSHARNRRNHSRTIAGGAVARRSSTMLLETSRCRTSRLQKNLSECGDFSSRHGSLMPPESTSIILKEIMTALTQPNIGLLGLYGSSNANKENVVEKVTRRVERDGLFNVVVKTCVMKKPDLKRIQGELGNALGLQLHEKTLKERATRLCERVKMEDKILIILHDLHGQINLAKIGIPFGNDHKGCKILLVTENKEVLSHKMKTQIEFSVDEEPSSSGLIY* >Glyma08g12560.5 sequence type=predicted peptide gene model=Glyma08g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLMETSHARNRRNHSRTIAGGAVARRSSTMLLETSRCRTSRLQKNLSEYFSSRHGSLMPPESTSIILKEIMTALTQPNIGLLGLYGSSNANKENVVEKVTRRVERDGLFNVVVKTCVMKKPDLKRIQGELGNALGLQLHEKTLKERATRLCERVKMEDKILIILHDLHGQINLAKIGIPFGNDHKGCKILLVTENKEVLSHKMKTQIEFSVDEEPSSSGLIY* >Glyma08g12560.6 sequence type=predicted peptide gene model=Glyma08g12560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPPESTSIILKEIMTALTQPNIGLLGLYGSSNANKENVVEKVTRRVERDGLFNVVVKTCVMKKPDLKRIQGELGNALGLQLHEKTLKERATRLCERVKMEDKILIILHDLHGQINLAKIGIPFGNDHKGCKILLVTENKEVLSHKMKTQIEFSVDEEPSSSGLIY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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