Glyma08g12500 - SoyBase

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Report for Sequence Feature Glyma08g12500

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9177110
stop:	9179571
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29300	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF641) \| chr1:10248120-10249499 REVERSE LENGTH=459	SoyBase	E_val: 4.00E-163	ISS
GO:0009567	GO-bp	Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm	SoyBase	N/A	ISS
PF04859	PFAM	Plant protein of unknown function (DUF641)	JGI		ISS
UniRef100_G7JCG9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UNE1-like protein n=1 Tax=Medicago truncatula RepID=G7JCG9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023382BC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023382BC related cluster n=1 Tax=unknown RepID=UPI00023382BC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g12500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12500

Paralog	Evidence	Comments
Glyma05g29350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g118600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g12500

Limit To All Plant Sequences

>Glyma08g12500.1   sequence type=CDS   gene model=Glyma08g12500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACCATGAAGCCCAAATCAGCACTGAGCAATAGGAGCAAGAAACTGGCAAAGACATTCCAGAAGGTGATGAGCCTCCGAAGTGCAACGAAACTCGCTTCAAACAATGGCATTTGCATGCTCAATTCCCACCTCAAAGTCAAGGAAGATCTCTTCACCGATCAGAACAAGAAACCCCACCAAGGAAACAACAAGAATAGAGCAATTATGGAGGCTCTAATTGCAAGACTCTTCGCTGGAGTCACCACCATCAAAGCAGCATATGCAGAACTCCAAATGGCTCAGCACCCTTACAACAACGAGTCCATTCAAGCCGCGGATCAAGCCGTGGTGGATGAACTCAGAGCCATATCGGAGTTGAAGCGCAGGTTCTTGAAAAGGGACCTTGATCTTTCGCCGCAAGTCACCATTATGCTCGCGGAGATCCAGGAACAACAAAGTCTCATGAAAACCTACGAAATCACCATCAAGAGGCTCGAAGCCGAGGTTGATTTCAAGGACAATAACATCTCATCGCTCAAAAAACACCTCGACGAGTGTGTTTCCTTCAACAAATCGCTTGAGAAGAAACTCAACTCGAGTGGCTCCTTGTCATTGTTTGATAACCTCACACTTTCGTCGTTGAGTCCATCCCATTTTGTTCATTTCCTTCACCACTCTTTAAGATCAGTTAGAAGCTTCTCCAAGATTATGATCGCGGAAATGGAATCTGCTCATTGGGATCTCGAAGCAGCGGTTAAGTTCATTCATCCAAACGCAGTTTTCAACAAACCAACTCACCAAACCTTCGCATTTGAATCGTTTGTTTGCATAACGATGTTTGAAGGCTTCAACTACCCAAACTTCAACGTCCAAGAAGACAAAAACTTACACAACCAAGGAGCAGAAAACCTCTACTTTGACAAATTCAAAAGGCTCAAATCTTTGAATCCGAAACAGTACTTAACCCACAACCCAAACTCTTCCTTCTCCAAGTTCCTGAAATCCAAGTACCTTCAAGTGGTGCACGCCAAAATGGAGTGCTCCTTCTTCGGCAACTTGAACCAGAGGAAGGTGGTGAACTCTGGAGGGTACCCAGATTCTACTTTCTTCATTTCCTTTGCAGAGATGGCAAAGCGCGTTTGGGCCCTGCATTGTTTGGCGTTGTCGTTTCAGGACGATGATGTCACTGTTTTTCAAATCAAGAAGAACTCGAGGTTCTCTGAGGTGTACATGGAGAGTGTCACGGAAGAATCTGTTTCGCCTTCTGCCGGGGAATCCTCTGATTCCAGCTCCGGCGAGCTTAGGGTGGGTTTCACGGTGGTGCCGGGTTTCAAAATCGGCATTTTTGAAGTTGCTATTGTACATTTGGTCTCAAGAGTAGGGATGCTTCAGGTGCTCTGTTAG

Predicted protein sequences of Glyma08g12500

Limit To All Plant Sequences

>Glyma08g12500.1   sequence type=predicted peptide   gene model=Glyma08g12500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METMKPKSALSNRSKKLAKTFQKVMSLRSATKLASNNGICMLNSHLKVKEDLFTDQNKKPHQGNNKNRAIMEALIARLFAGVTTIKAAYAELQMAQHPYNNESIQAADQAVVDELRAISELKRRFLKRDLDLSPQVTIMLAEIQEQQSLMKTYEITIKRLEAEVDFKDNNISSLKKHLDECVSFNKSLEKKLNSSGSLSLFDNLTLSSLSPSHFVHFLHHSLRSVRSFSKIMIAEMESAHWDLEAAVKFIHPNAVFNKPTHQTFAFESFVCITMFEGFNYPNFNVQEDKNLHNQGAENLYFDKFKRLKSLNPKQYLTHNPNSSFSKFLKSKYLQVVHAKMECSFFGNLNQRKVVNSGGYPDSTFFISFAEMAKRVWALHCLALSFQDDDVTVFQIKKNSRFSEVYMESVTEESVSPSAGESSDSSSGELRVGFTVVPGFKIGIFEVAIVHLVSRVGMLQVLC*

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