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Report for Sequence Feature Glyma08g12460

Feature Type:gene_model
Chromosome:Gm08
Start:9144547
stop:9146579
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g12460
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29280AT Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 65 | chr1:10236589-10237467 FORWARD LENGTH=259 SoyBaseE_val: 2.00E-78ISS
GO:0000041GO-bp Annotation by Michelle Graham. GO Biological Process: transition metal ion transport SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0015698GO-bp Annotation by Michelle Graham. GO Biological Process: inorganic anion transport SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03106PFAM WRKY DNA -binding domain JGI ISS
UniRef100_A7LHI5UniRef Annotation by Michelle Graham. Most informative UniRef hit: WRKY48 n=1 Tax=Glycine max RepID=A7LHI5_SOYBN SoyBaseE_val: 3.00E-170ISS
UniRef100_A7LHI5UniRef Annotation by Michelle Graham. Best UniRef hit: WRKY48 n=1 Tax=Glycine max RepID=A7LHI5_SOYBN SoyBaseE_val: 3.00E-170ISS

Proteins Associated with Glyma08g12460
LocusGene SymbolProtein Name
WRKY48 WRKY Transcription Factor

Expression Patterns of Glyma08g12460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12460
ParalogEvidenceComments
Glyma05g29310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12460 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g118200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g12460
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g12460
>Glyma08g12460.1   sequence type=CDS   gene model=Glyma08g12460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGTAAGTTCAGAAAAAACAACCGCAACTCATATACCAGTGAACAAGATCAAGACACTGATCATGATGTAGCTCAAGAAAACATTGCCGAGTCCCCTCCTTCTTCCACTGTGTTCAACATCGATGGCTTAGTCCCATCCCCCACCCCTTCATCAAAGAGAAGGAGGGCAATACAGAAAAGGGTGGTGCAAATCCCAATGAAGGAGACAGAAGGGTGTAGGCTAAAAGGAGAGAGCAACACCCCACCCTCGGATTCATGGGCTTGGAGAAAGTATGGACAGAAACCCATCAAGGGTTCCCCTTATCCCAGAGGGTACTACAGGTGTAGCAGTTCCAAGGGCTGTCCGGCACGGAAACAAGTGGAAAGGAGCTGCGTGGACCCCACAATGCTAGTCGTCACTTACTCCTCCGACCACAACCATCCATGGCCACCTTCTAGAAACCACGCCAGGCCCACCAAGAAGCCTGAACCGGTTCCGGACCCGGTCCAACCCGAACCGGAGGAGAAGTTCGCGGACCTGGGCGGGGACGACTCCATGATAACCACCGCGGAGGAATTGGGCTGGCTGGGGGAGATGGAAACGACGTCATCCACGGTGCTCGAAAGCCCCATTATGGCCACGGGCTACCACGCTGACGTGGCGCTGATTCCGATGAGGGAGGAGGACGAGTCGCTCTTCGCCGACCTCGGGGAGCTGCCGGAGTGCTCGGTGGTATTCAGGCAGGGGCTGCTGACGGAGCGGCGGCGGTACACCGCGCCGTGGTGCGGGACCACAAGTTGA
Predicted protein sequences of Glyma08g12460
>Glyma08g12460.1   sequence type=predicted peptide   gene model=Glyma08g12460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSKFRKNNRNSYTSEQDQDTDHDVAQENIAESPPSSTVFNIDGLVPSPTPSSKRRRAIQKRVVQIPMKETEGCRLKGESNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSCVDPTMLVVTYSSDHNHPWPPSRNHARPTKKPEPVPDPVQPEPEEKFADLGGDDSMITTAEELGWLGEMETTSSTVLESPIMATGYHADVALIPMREEDESLFADLGELPECSVVFRQGLLTERRRYTAPWCGTTS*






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