Glyma08g12410 - SoyBase

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Report for Sequence Feature Glyma08g12410

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9080955
stop:	9086789
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45760	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr5:18561121-18563005 FORWARD LENGTH=360	SoyBase	E_val: 2.00E-156	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0279	KOG	G protein beta subunit-like protein	JGI		ISS
PTHR22847	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR22847:SF207	Panther	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PR	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7LJG4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase n=1 Tax=Medicago truncatula RepID=G7LJG4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023382BB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023382BB related cluster n=1 Tax=unknown RepID=UPI00023382BB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g12410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12410

Paralog	Evidence	Comments
Glyma05g29250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g117600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g12410

Limit To All Plant Sequences

>Glyma08g12410.2   sequence type=transcript   gene model=Glyma08g12410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAAAGTCGGGTTCAGTCGTGACACATAAATAGCATACAAGAGACAAATGATTCGTCGTGCCCGGTGTCAGTAACGACGCTTTGCCGCGCGGTTTCATTTCACCGCAGCAACTTGGTGACTCCATTCCCATCACCGCAACCACATACTACTACGTTTCTGTCTTCGTTCCATTCTCTTCCTCTTGTGAGTGCAATCAATCCGTTACATTGTTATATATTCACACACCTGAGCCGATTTAGGTTTAGAGTCTCTTCACTTTAGAAACGGTACCATCGATGGCGGAGAAGGATGTGCCGAAGCTTAAGCTGAAACCTCGAAGACTCAAGGGTCACGACGACAGCACAACCTGCTGCATTGCCTCACGTGAACGCTCTCATCTGATTGTCACTTCCGGCGATGATGGTCGTGTTTGCTGGTTTGACCTGCGATGTCCTGATGTGCCGCAACTGGTTATGGATGTTAGTGTGGAGCCAGTTTCGTCCTTTTGTTTCAAGTCAGGAATGGAAGATATGATTTATGTCTCCTCAGGGAAGGAAATCAAGTGTTTTGATGTGCGATTGGCCGCCGCCCAATGGAAGCCATTGGAGAATTATAATTATAACAAAGAGGAGATAAACAAGGTTGTATGCAACTCAAAGTCCTCATTTGTTGCTGCAGCAGACGATAATGGTGAAGTTAAGATAATTGACATTCGCCAGCAATGCCTGTATAAAACACTACGAGCTGGTCATACAAGTATATGTAGCACTGTGGAATTCCTTCCTTGGAGATCTTGGGAGGTCATTAGTGGAGGTCTTGATTCAATGCTCATGTTGTGGGACTTCTCCAAAGGGCGCCCCTACAAAGTAGTGGATTTTGCTACATTTGATGTGAGTAGTGGCATTGCTGGCCGGTGTGTCAATCCTGCTTTTGTTCATGCAATAGCTGTTCCAGAAGTTGACATGCTAGATAAATTAGACAAAATATGCGCTGCTGCAAGGGGCGATGGAGCTATTGATGTGATTAATATTGAAACAGAAATGGCTGCTACAAAATCAAAAAGCTCTTCAAATTCACGAAAAGGATCACACTCAAGATCAAAAGATGGTAGTTCATCTAGCAATACAGACGCAGATCAAAATGGAAAAAAGAGGTTGCATTTGAATTACACTTTGGGTGGCCATACTGCAGCTGTTTCCAGCCTGGCATTTTCATTGTTTGGGGAAAGAGGGAAATTCTTGATATCTGGAGGAAATGATAAGTTGGTGAAGATATGGAATTGGTCCTGTTATCCAGATGTAGGGTTAAGTGACGACAATAACAATAATATCCTACATTTGAACATTGAAGTATCTCGAAAAGTCAATTGGCTGTGTACCACCTCAGCTGATACAGACAACCTTGTTGTGTGTGACACATCTAAAGTAGTAAAGGTCTACTCTATAACATAGTTTAAAACTAGATGACAGTGATGGATGATGCAATCTTCTTGTGTTGGTCATGGTTTAGGAATATGGAAAAGGGTTTTGTAATGCATTTTAATCAATGGTTGAGTAATCTAAGAGATGGATTTTGTAATCAGGGGAGGGAAGCATACATAGGACCTGGGTAGCCTATAGCTTACAATATGAGCAGCTTATGGTTAGCTAATTCGACTGTTCAAGCTTGTATTAGGAAACCATATGTCTGCTGAACTTCAAAAATTTGTGTTCTTAGTACCCCTGGTACTTACATATATACACTAATTTATCTTTGCTGATAAAAAAAAAGATGACAGTGATTATTGGAATGAGTATTCCTGGAGAGCAATCAAAACCTAAAATGACTGTTTGAAATTGTAATGTTTCACTTACTCCAAAGATTGTGCACCTGACAAGAAACGTCCTAAAAGCACAAGGCTTTTAGCCTAGATATACCTGCCTAGGTGCTTGCTTTGCGATTCTCTCCCTGATTCAATGCCTACAAGAACTGTTCAATGATGACCTATACTTCCTCATTTACATGGTGTGTGATTCATACCATGTTTAC

Coding sequences of Glyma08g12410

Limit To All Plant Sequences

>Glyma08g12410.1   sequence type=CDS   gene model=Glyma08g12410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGAAGGATGTGCCGAAGCTTAAGCTGAAACCTCGAAGACTCAAGGGTCACGACGACAGCACAACCTGCTGCATTGCCTCACGTGAACGCTCTCATCTGATTGTCACTTCCGGCGATGATGGTCGTGTTTGCTGGTTTGACCTGCGATGTCCTGATGTGCCGCAACTGGTTATGGATGTTAGTGTGGAGCCAGTTTCGTCCTTTTGTTTCAAGTCAGGAATGGAAGATATGATTTATGTCTCCTCAGGGAAGGAAATCAAGTGTTTTGATGTGCGATTGGCCGCCGCCCAATGGAAGCCATTGGAGAATTATAATTATAACAAAGAGGAGATAAACAAGGTTGTATGCAACTCAAAGTCCTCATTTGTTGCTGCAGCAGACGATAATGGTGAAGTTAAGATAATTGACATTCGCCAGCAATGCCTGTATAAAACACTACGAGCTGGTCATACAAGTATATGTAGCACTGTGGAATTCCTTCCTTGGAGATCTTGGGAGGTCATTAGTGGAGGTCTTGATTCAATGCTCATGTTGTGGGACTTCTCCAAAGGGCGCCCCTACAAAGTAGTGGATTTTGCTACATTTGATGTGAGTAGTGGCATTGCTGGCCGGTGTGTCAATCCTGCTTTTGTTCATGCAATAGCTGTTCCAGAAGTTGACATGCTAGATAAATTAGACAAAATATGCGCTGCTGCAAGGGGCGATGGAGCTATTGATGTGATTAATATTGAAACAGAAATGGCTGCTACAAAATCAAAAAGCTCTTCAAATTCACGAAAAGGATCACACTCAAGATCAAAAGATGGTAGTTCATCTAGCAATACAGACGCAGATCAAAATGGAAAAAAGAGGTTGCATTTGAATTACACTTTGGGTGGCCATACTGCAGCTGTTTCCAGCCTGGCATTTTCATTGTTTGGGGAAAGAGGGAAATTCTTGATATCTGGAGGAAATGATAAGTTGGTGAAGATATGGAATTGGTCCTGTTATCCAGATGTAGGGTTAAGTGACGACAATAACAATAATATCCTACATTTGAACATTGAAGTATCTCGAAAAGTGAGTTTTGTAATATATTTAATTTAA

>Glyma08g12410.2   sequence type=CDS   gene model=Glyma08g12410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGAAGGATGTGCCGAAGCTTAAGCTGAAACCTCGAAGACTCAAGGGTCACGACGACAGCACAACCTGCTGCATTGCCTCACGTGAACGCTCTCATCTGATTGTCACTTCCGGCGATGATGGTCGTGTTTGCTGGTTTGACCTGCGATGTCCTGATGTGCCGCAACTGGTTATGGATGTTAGTGTGGAGCCAGTTTCGTCCTTTTGTTTCAAGTCAGGAATGGAAGATATGATTTATGTCTCCTCAGGGAAGGAAATCAAGTGTTTTGATGTGCGATTGGCCGCCGCCCAATGGAAGCCATTGGAGAATTATAATTATAACAAAGAGGAGATAAACAAGGTTGTATGCAACTCAAAGTCCTCATTTGTTGCTGCAGCAGACGATAATGGTGAAGTTAAGATAATTGACATTCGCCAGCAATGCCTGTATAAAACACTACGAGCTGGTCATACAAGTATATGTAGCACTGTGGAATTCCTTCCTTGGAGATCTTGGGAGGTCATTAGTGGAGGTCTTGATTCAATGCTCATGTTGTGGGACTTCTCCAAAGGGCGCCCCTACAAAGTAGTGGATTTTGCTACATTTGATGTGAGTAGTGGCATTGCTGGCCGGTGTGTCAATCCTGCTTTTGTTCATGCAATAGCTGTTCCAGAAGTTGACATGCTAGATAAATTAGACAAAATATGCGCTGCTGCAAGGGGCGATGGAGCTATTGATGTGATTAATATTGAAACAGAAATGGCTGCTACAAAATCAAAAAGCTCTTCAAATTCACGAAAAGGATCACACTCAAGATCAAAAGATGGTAGTTCATCTAGCAATACAGACGCAGATCAAAATGGAAAAAAGAGGTTGCATTTGAATTACACTTTGGGTGGCCATACTGCAGCTGTTTCCAGCCTGGCATTTTCATTGTTTGGGGAAAGAGGGAAATTCTTGATATCTGGAGGAAATGATAAGTTGGTGAAGATATGGAATTGGTCCTGTTATCCAGATGTAGGGTTAAGTGACGACAATAACAATAATATCCTACATTTGAACATTGAAGTATCTCGAAAAGTCAATTGGCTGTGTACCACCTCAGCTGATACAGACAACCTTGTTGTGTGTGACACATCTAAAGTAGTAAAGGTCTACTCTATAACATAG

Predicted protein sequences of Glyma08g12410

Limit To All Plant Sequences

>Glyma08g12410.1   sequence type=predicted peptide   gene model=Glyma08g12410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEKDVPKLKLKPRRLKGHDDSTTCCIASRERSHLIVTSGDDGRVCWFDLRCPDVPQLVMDVSVEPVSSFCFKSGMEDMIYVSSGKEIKCFDVRLAAAQWKPLENYNYNKEEINKVVCNSKSSFVAAADDNGEVKIIDIRQQCLYKTLRAGHTSICSTVEFLPWRSWEVISGGLDSMLMLWDFSKGRPYKVVDFATFDVSSGIAGRCVNPAFVHAIAVPEVDMLDKLDKICAAARGDGAIDVINIETEMAATKSKSSSNSRKGSHSRSKDGSSSSNTDADQNGKKRLHLNYTLGGHTAAVSSLAFSLFGERGKFLISGGNDKLVKIWNWSCYPDVGLSDDNNNNILHLNIEVSRKVSFVIYLI*

>Glyma08g12410.2   sequence type=predicted peptide   gene model=Glyma08g12410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEKDVPKLKLKPRRLKGHDDSTTCCIASRERSHLIVTSGDDGRVCWFDLRCPDVPQLVMDVSVEPVSSFCFKSGMEDMIYVSSGKEIKCFDVRLAAAQWKPLENYNYNKEEINKVVCNSKSSFVAAADDNGEVKIIDIRQQCLYKTLRAGHTSICSTVEFLPWRSWEVISGGLDSMLMLWDFSKGRPYKVVDFATFDVSSGIAGRCVNPAFVHAIAVPEVDMLDKLDKICAAARGDGAIDVINIETEMAATKSKSSSNSRKGSHSRSKDGSSSSNTDADQNGKKRLHLNYTLGGHTAAVSSLAFSLFGERGKFLISGGNDKLVKIWNWSCYPDVGLSDDNNNNILHLNIEVSRKVNWLCTTSADTDNLVVCDTSKVVKVYSIT*

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