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Report for Sequence Feature Glyma08g12410

Feature Type:gene_model
Chromosome:Gm08
Start:9080955
stop:9086789
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G45760AT Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr5:18561121-18563005 FORWARD LENGTH=360 SoyBaseE_val: 2.00E-156ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005834GO-cc Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
KOG0279 KOG G protein beta subunit-like protein JGI ISS
PTHR22847Panther WD40 REPEAT PROTEIN JGI ISS
PTHR22847:SF207Panther TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PR JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
UniRef100_G7LJG4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase n=1 Tax=Medicago truncatula RepID=G7LJG4_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI00023382BBUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023382BB related cluster n=1 Tax=unknown RepID=UPI00023382BB SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma05g29250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g117600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g12410.2   sequence type=transcript   gene model=Glyma08g12410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAAAGTCGGGTTCAGTCGTGACACATAAATAGCATACAAGAGACAAATGATTCGTCGTGCCCGGTGTCAGTAACGACGCTTTGCCGCGCGGTTTCATTTCACCGCAGCAACTTGGTGACTCCATTCCCATCACCGCAACCACATACTACTACGTTTCTGTCTTCGTTCCATTCTCTTCCTCTTGTGAGTGCAATCAATCCGTTACATTGTTATATATTCACACACCTGAGCCGATTTAGGTTTAGAGTCTCTTCACTTTAGAAACGGTACCATCGATGGCGGAGAAGGATGTGCCGAAGCTTAAGCTGAAACCTCGAAGACTCAAGGGTCACGACGACAGCACAACCTGCTGCATTGCCTCACGTGAACGCTCTCATCTGATTGTCACTTCCGGCGATGATGGTCGTGTTTGCTGGTTTGACCTGCGATGTCCTGATGTGCCGCAACTGGTTATGGATGTTAGTGTGGAGCCAGTTTCGTCCTTTTGTTTCAAGTCAGGAATGGAAGATATGATTTATGTCTCCTCAGGGAAGGAAATCAAGTGTTTTGATGTGCGATTGGCCGCCGCCCAATGGAAGCCATTGGAGAATTATAATTATAACAAAGAGGAGATAAACAAGGTTGTATGCAACTCAAAGTCCTCATTTGTTGCTGCAGCAGACGATAATGGTGAAGTTAAGATAATTGACATTCGCCAGCAATGCCTGTATAAAACACTACGAGCTGGTCATACAAGTATATGTAGCACTGTGGAATTCCTTCCTTGGAGATCTTGGGAGGTCATTAGTGGAGGTCTTGATTCAATGCTCATGTTGTGGGACTTCTCCAAAGGGCGCCCCTACAAAGTAGTGGATTTTGCTACATTTGATGTGAGTAGTGGCATTGCTGGCCGGTGTGTCAATCCTGCTTTTGTTCATGCAATAGCTGTTCCAGAAGTTGACATGCTAGATAAATTAGACAAAATATGCGCTGCTGCAAGGGGCGATGGAGCTATTGATGTGATTAATATTGAAACAGAAATGGCTGCTACAAAATCAAAAAGCTCTTCAAATTCACGAAAAGGATCACACTCAAGATCAAAAGATGGTAGTTCATCTAGCAATACAGACGCAGATCAAAATGGAAAAAAGAGGTTGCATTTGAATTACACTTTGGGTGGCCATACTGCAGCTGTTTCCAGCCTGGCATTTTCATTGTTTGGGGAAAGAGGGAAATTCTTGATATCTGGAGGAAATGATAAGTTGGTGAAGATATGGAATTGGTCCTGTTATCCAGATGTAGGGTTAAGTGACGACAATAACAATAATATCCTACATTTGAACATTGAAGTATCTCGAAAAGTCAATTGGCTGTGTACCACCTCAGCTGATACAGACAACCTTGTTGTGTGTGACACATCTAAAGTAGTAAAGGTCTACTCTATAACATAGTTTAAAACTAGATGACAGTGATGGATGATGCAATCTTCTTGTGTTGGTCATGGTTTAGGAATATGGAAAAGGGTTTTGTAATGCATTTTAATCAATGGTTGAGTAATCTAAGAGATGGATTTTGTAATCAGGGGAGGGAAGCATACATAGGACCTGGGTAGCCTATAGCTTACAATATGAGCAGCTTATGGTTAGCTAATTCGACTGTTCAAGCTTGTATTAGGAAACCATATGTCTGCTGAACTTCAAAAATTTGTGTTCTTAGTACCCCTGGTACTTACATATATACACTAATTTATCTTTGCTGATAAAAAAAAAGATGACAGTGATTATTGGAATGAGTATTCCTGGAGAGCAATCAAAACCTAAAATGACTGTTTGAAATTGTAATGTTTCACTTACTCCAAAGATTGTGCACCTGACAAGAAACGTCCTAAAAGCACAAGGCTTTTAGCCTAGATATACCTGCCTAGGTGCTTGCTTTGCGATTCTCTCCCTGATTCAATGCCTACAAGAACTGTTCAATGATGACCTATACTTCCTCATTTACATGGTGTGTGATTCATACCATGTTTAC

>Glyma08g12410.1   sequence type=CDS   gene model=Glyma08g12410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGAAGGATGTGCCGAAGCTTAAGCTGAAACCTCGAAGACTCAAGGGTCACGACGACAGCACAACCTGCTGCATTGCCTCACGTGAACGCTCTCATCTGATTGTCACTTCCGGCGATGATGGTCGTGTTTGCTGGTTTGACCTGCGATGTCCTGATGTGCCGCAACTGGTTATGGATGTTAGTGTGGAGCCAGTTTCGTCCTTTTGTTTCAAGTCAGGAATGGAAGATATGATTTATGTCTCCTCAGGGAAGGAAATCAAGTGTTTTGATGTGCGATTGGCCGCCGCCCAATGGAAGCCATTGGAGAATTATAATTATAACAAAGAGGAGATAAACAAGGTTGTATGCAACTCAAAGTCCTCATTTGTTGCTGCAGCAGACGATAATGGTGAAGTTAAGATAATTGACATTCGCCAGCAATGCCTGTATAAAACACTACGAGCTGGTCATACAAGTATATGTAGCACTGTGGAATTCCTTCCTTGGAGATCTTGGGAGGTCATTAGTGGAGGTCTTGATTCAATGCTCATGTTGTGGGACTTCTCCAAAGGGCGCCCCTACAAAGTAGTGGATTTTGCTACATTTGATGTGAGTAGTGGCATTGCTGGCCGGTGTGTCAATCCTGCTTTTGTTCATGCAATAGCTGTTCCAGAAGTTGACATGCTAGATAAATTAGACAAAATATGCGCTGCTGCAAGGGGCGATGGAGCTATTGATGTGATTAATATTGAAACAGAAATGGCTGCTACAAAATCAAAAAGCTCTTCAAATTCACGAAAAGGATCACACTCAAGATCAAAAGATGGTAGTTCATCTAGCAATACAGACGCAGATCAAAATGGAAAAAAGAGGTTGCATTTGAATTACACTTTGGGTGGCCATACTGCAGCTGTTTCCAGCCTGGCATTTTCATTGTTTGGGGAAAGAGGGAAATTCTTGATATCTGGAGGAAATGATAAGTTGGTGAAGATATGGAATTGGTCCTGTTATCCAGATGTAGGGTTAAGTGACGACAATAACAATAATATCCTACATTTGAACATTGAAGTATCTCGAAAAGTGAGTTTTGTAATATATTTAATTTAA

>Glyma08g12410.2   sequence type=CDS   gene model=Glyma08g12410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGAAGGATGTGCCGAAGCTTAAGCTGAAACCTCGAAGACTCAAGGGTCACGACGACAGCACAACCTGCTGCATTGCCTCACGTGAACGCTCTCATCTGATTGTCACTTCCGGCGATGATGGTCGTGTTTGCTGGTTTGACCTGCGATGTCCTGATGTGCCGCAACTGGTTATGGATGTTAGTGTGGAGCCAGTTTCGTCCTTTTGTTTCAAGTCAGGAATGGAAGATATGATTTATGTCTCCTCAGGGAAGGAAATCAAGTGTTTTGATGTGCGATTGGCCGCCGCCCAATGGAAGCCATTGGAGAATTATAATTATAACAAAGAGGAGATAAACAAGGTTGTATGCAACTCAAAGTCCTCATTTGTTGCTGCAGCAGACGATAATGGTGAAGTTAAGATAATTGACATTCGCCAGCAATGCCTGTATAAAACACTACGAGCTGGTCATACAAGTATATGTAGCACTGTGGAATTCCTTCCTTGGAGATCTTGGGAGGTCATTAGTGGAGGTCTTGATTCAATGCTCATGTTGTGGGACTTCTCCAAAGGGCGCCCCTACAAAGTAGTGGATTTTGCTACATTTGATGTGAGTAGTGGCATTGCTGGCCGGTGTGTCAATCCTGCTTTTGTTCATGCAATAGCTGTTCCAGAAGTTGACATGCTAGATAAATTAGACAAAATATGCGCTGCTGCAAGGGGCGATGGAGCTATTGATGTGATTAATATTGAAACAGAAATGGCTGCTACAAAATCAAAAAGCTCTTCAAATTCACGAAAAGGATCACACTCAAGATCAAAAGATGGTAGTTCATCTAGCAATACAGACGCAGATCAAAATGGAAAAAAGAGGTTGCATTTGAATTACACTTTGGGTGGCCATACTGCAGCTGTTTCCAGCCTGGCATTTTCATTGTTTGGGGAAAGAGGGAAATTCTTGATATCTGGAGGAAATGATAAGTTGGTGAAGATATGGAATTGGTCCTGTTATCCAGATGTAGGGTTAAGTGACGACAATAACAATAATATCCTACATTTGAACATTGAAGTATCTCGAAAAGTCAATTGGCTGTGTACCACCTCAGCTGATACAGACAACCTTGTTGTGTGTGACACATCTAAAGTAGTAAAGGTCTACTCTATAACATAG

>Glyma08g12410.1   sequence type=predicted peptide   gene model=Glyma08g12410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEKDVPKLKLKPRRLKGHDDSTTCCIASRERSHLIVTSGDDGRVCWFDLRCPDVPQLVMDVSVEPVSSFCFKSGMEDMIYVSSGKEIKCFDVRLAAAQWKPLENYNYNKEEINKVVCNSKSSFVAAADDNGEVKIIDIRQQCLYKTLRAGHTSICSTVEFLPWRSWEVISGGLDSMLMLWDFSKGRPYKVVDFATFDVSSGIAGRCVNPAFVHAIAVPEVDMLDKLDKICAAARGDGAIDVINIETEMAATKSKSSSNSRKGSHSRSKDGSSSSNTDADQNGKKRLHLNYTLGGHTAAVSSLAFSLFGERGKFLISGGNDKLVKIWNWSCYPDVGLSDDNNNNILHLNIEVSRKVSFVIYLI*

>Glyma08g12410.2   sequence type=predicted peptide   gene model=Glyma08g12410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEKDVPKLKLKPRRLKGHDDSTTCCIASRERSHLIVTSGDDGRVCWFDLRCPDVPQLVMDVSVEPVSSFCFKSGMEDMIYVSSGKEIKCFDVRLAAAQWKPLENYNYNKEEINKVVCNSKSSFVAAADDNGEVKIIDIRQQCLYKTLRAGHTSICSTVEFLPWRSWEVISGGLDSMLMLWDFSKGRPYKVVDFATFDVSSGIAGRCVNPAFVHAIAVPEVDMLDKLDKICAAARGDGAIDVINIETEMAATKSKSSSNSRKGSHSRSKDGSSSSNTDADQNGKKRLHLNYTLGGHTAAVSSLAFSLFGERGKFLISGGNDKLVKIWNWSCYPDVGLSDDNNNNILHLNIEVSRKVNWLCTTSADTDNLVVCDTSKVVKVYSIT*







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