Glyma08g12390 - SoyBase

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Report for Sequence Feature Glyma08g12390

Feature Type:	gene_model
Chromosome:	Gm08
Start:	9061271
stop:	9070554
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18750	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr4:10304850-10307465 FORWARD LENGTH=871	SoyBase	E_val: 0	ISS
GO:0010087	GO-bp	Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis	SoyBase	N/A	ISS
GO:0010305	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation	SoyBase	N/A	ISS
GO:0010588	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon vascular tissue pattern formation	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF49	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7LJG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7LJG1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KSF6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KSF6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g12390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12390

Paralog	Evidence	Comments
Glyma05g29215	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g117400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g12390

Limit To All Plant Sequences

>Glyma08g12390.2   sequence type=CDS   gene model=Glyma08g12390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTTGAAGACGAAGAGTCGAAGACAGAGAGTGCAATGCTAATCATGTCGAAAAGCATAGCAACGTTGACCACTTATCCAACATATCATAGTCACAGAAACAAATCAAACTATGCAAAATCTCCGAATTGTTTCATCCTCTTCAGACAATCTTGGTCAACATTTCTGTTACCTTCGAATATGGACCTTTCTTGCGGTAGCAGTGTTGGTGTCTCTGCGACTTTGTCCGAGACAACCCACAACAACGTAACCGTGGACAAAAATGCAAAGATTTGCAAGTTCTGCGAAATGGGTGATCTCAGAAACGCCATGAAATTGCTCTCAAGGTCACAAAGGTCTGAACTTGAGTTGAATACTTACTGTTCTGTGTTGCAGCTCTGTGCTGAGCTTAAGTCTTTGGAAGATGGAAAGAGGGTTCATTCCATTATCAGTTCCAATGGCATGGCAATTGATGAGGTTTTGGGGGCTAAACTAGTCTTCATGTATGTGAATTGTGGTGATTTGGTTAAAGGGAGACGAATATTTGATGGTATCCTCAATGATAAGATTTTCCTCTGGAATCTTTTGATGTCTGAATATGCAAAGATCGGTAATTACAGGGAAAGTGTGGGTCTTTTTGAGAAAATGCAGGAGTTGGGAATTAGAGGGGATTCTTATACATTTACTTGTGTCTTGAAGGGTTTTGCTGCATCGGCAAAGGTGAGGGAGTGCAAAAGGGTTCATGGGTATGTTCTAAAACTGGGTTTTGGTTCTTATAATGCTGTTGTTAACTCTCTAATTGCAGCTTATTTTAAATGTGGTGAAGTTGAAAGTGCACGTATTTTGTTTGATGAATTGAGTGACAGAGATGTTGTTTCCTGGAATTCTATGATTAGTGGGTGTACTATGAATGGCTTTTCCAGAAATGGACTTGAGTTTTTCATCCAGATGCTGAATTTGGGGGTTGATGTGGATTCAGCCACCTTGGTTAACGTTCTTGTGGCTTGTGCAAATGTTGGCAACCTTACACTGGGTAGAGCTCTTCATGCTTATGGAGTGAAAGCTGGTTTTAGCGGGGGTGTCATGTTTAACAACACCTTACTAGACATGTATTCTAAATGTGGTAATTTGAATGGTGCAAATGAAGTTTTTGTGAAGATGGGTGAAACAACTATAGTTTCTTGGACTTCAATCATAGCTGCTCATGTTCGAGAAGGTCTACATTACGAGGCTATTGGATTATTTGATGAAATGCAAAGCAAAGGTCTTAGGCCTGATATTTATGCTGTCACAAGCGTTGTTCATGCTTGTGCTTGTAGCAACTCCTTGGATAAAGGAAGGGAGGTACACAATCACATTAAAAAGAACAACATGGGGTCAAACTTGCCGGTTTCTAATGCTCTCATGAATATGTATGCAAAATGTGGAAGTATGGAAGAAGCTAATTTAATTTTCTCTCAACTTCCAGTCAAGAACATTGTCTCTTGGAATACGATGATTGGAGGTTATTCACAAAACTCACTTCCCAATGAAGCTCTACAACTGTTTCTGGACATGCAAAAACAATTGAAGCCTGATGACGTTACAATGGCTTGTGTCCTTCCAGCTTGTGCAGGCTTAGCAGCTCTAGAGAAAGGCAGAGAGATACATGGGCACATATTGAGAAAAGGGTACTTTTCAGATTTACATGTAGCCTGTGCACTTGTTGATATGTACGTGAAATGTGGGTTACTAGTTCTTGCACAACAACTGTTTGATATGATTCCTAAAAAGGATATGATCTTGTGGACTGTTATGATAGCTGGATATGGCATGCATGGGTTTGGAAAGGAGGCAATTTCCACATTTGAAAAGATGAGGGTTGCTGGTATTGAGCCTGAAGAGTCTTCCTTCACTTCCATCCTTTATGCTTGCACTCATTCTGGATTACTGAAAGAGGGATGGAAACTCTTTGATTCCATGAAAAGTGAATGCAACATTGAGCCCAAGTTAGAACACTATGCATGTATGGTGGATCTCCTTATCCGCTCTGGAAATCTATCCAGGGCATACAAGTTCATTGAAACTATGCCAATTAAACCAGATGCTGCAATTTGGGGTGCCTTGCTTTCTGGGTGCAGGATACATCATGATGTGGAGCTAGCAGAAAAAGTGGCAGAGCATATTTTTGAGCTTGAGCCAGAGAACACAAGGTATTATGTTCTTCTAGCGAATGTCTATGCAGAGGCTGAAAAGTGGGAAGAAGTGAAAAAGATACAAAGAAGGATAAGTAAGGGTGGATTAAAAAACGATCAAGGCTGTAGTTGGATAGAGGTCCAAGGAAAGTTTAATATCTTTTTTGCTGGTGATACTTCACACCCTCAGGCCAAAATGATAGACTCATTGCTTAGAAAATTGACAATGAAAATGAATAGGGGAGGTTACTCTAATAAGATTAAGTATGCATTGATTAATGCAGATGATAGGCTGAAGGAAGTGCTTCTATGTGCACACAAAGAGTTATTCAAAAAAACAATGATAGAGTCCTCCTCAAGTTCAGAGAAAGGAAAGAACGTGACTGAAGAGAAAAACAAAGCGAAAAAAGAAATTTAG

Predicted protein sequences of Glyma08g12390

Limit To All Plant Sequences

>Glyma08g12390.2   sequence type=predicted peptide   gene model=Glyma08g12390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFEDEESKTESAMLIMSKSIATLTTYPTYHSHRNKSNYAKSPNCFILFRQSWSTFLLPSNMDLSCGSSVGVSATLSETTHNNVTVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFAGDTSHPQAKMIDSLLRKLTMKMNRGGYSNKIKYALINADDRLKEVLLCAHKELFKKTMIESSSSSEKGKNVTEEKNKAKKEI*

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