Report for Sequence Feature Glyma08g12380
Feature Type: gene_model
Chromosome: Gm08
Start: 9056717
stop: 9059768
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g12380
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G34200 AT
Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein | chr2:14441105-14441882 FORWARD LENGTH=222
SoyBase E_val: 2.00E-25 ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR23012 Panther
MEMBRANE ASSOCIATED RING FINGER
JGI ISS
PTHR23012:SF31 Panther
PUTATIVE UNCHARACTERIZED PROTEIN OSJNBB0036G09.1 (
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_D7LGY3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LGY3_ARALL
SoyBase E_val: 2.00E-24 ISS
UniRef100_I1KSF5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSF5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g12380
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g12380
Paralog Evidence Comments
Glyma05g29211 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g12380 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g117300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g12380
Coding sequences of Glyma08g12380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g12380.1 sequence type=CDS gene model=Glyma08g12380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACCAAGCAATAAGCAAAGGCAGTGGTGAGATTTTGAATCATGTTGATGAAAGGGTGGATGAGGATTTGAACCAATTGGTTGAAGGAAAAGCAATTGATGCAGGAGCTGGACATAGCTTGGGTGAAGGAGTTAGTGTAAGTGGAGAAGATGGGACTTCAGAAGAGATGTGCAATGATCTTAGATTGAAGAAAGAGCTAAAGGAGGGACCTCAAGAAGTTAATGATCAGAACATGGGTGACCCACAAGAAATTAATGATACATTGCATGGGGTTGATCAAGGAACTAGTTATAGTTCAAGAGATTTGGTTAGTGGGGAAGTACCTGAGACTTGTGTTGTTATAGATCCTTTTACTCAGATTGAGTGTGTCAATGGAGATAATAGGAAATTGGAAGCAAAACCTAAGGAATCAGGGTTGAACAAGGTCTGTGATGGCTTTAGCGAGAATTTGGAAGGTGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACGATTGGAAGCAGCAGATGTTGGCACTGCAAGTAGTGCTACTACTAATACAGATTTGATTCAGCTCGGTTGTGCATGTAAAGATGAGCTAGGGATTGTGCATAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCGGATGTTACGGATAATGGATTTATTGAAGAGTGGAATGATACTAGATTCATGGACAGTGATAATACCTCATCCAGAAGGTTTGGTGGATGCTTGTGCGGACAACCATTTTGTAACTTCTTAATGGCATGCCTGGTAATAGCTTTTGTTCTGCCATGGTTCTTCCGTGTAAATATGTTCTAG
Predicted protein sequences of Glyma08g12380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g12380.1 sequence type=predicted peptide gene model=Glyma08g12380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDQAISKGSGEILNHVDERVDEDLNQLVEGKAIDAGAGHSLGEGVSVSGEDGTSEEMCNDLRLKKELKEGPQEVNDQNMGDPQEINDTLHGVDQGTSYSSRDLVSGEVPETCVVIDPFTQIECVNGDNRKLEAKPKESGLNKVCDGFSENLEGEMICRICHLASGQRLEAADVGTASSATTNTDLIQLGCACKDELGIVHSHCAEAWFKLKGNRLCEICGETAKNVSDVTDNGFIEEWNDTRFMDSDNTSSRRFGGCLCGQPFCNFLMACLVIAFVLPWFFRVNMF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
