SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G18640 | AT | Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr4:10260481-10263577 FORWARD LENGTH=678 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0007169 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein desumoylation | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0048527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root development | SoyBase | N/A | ISS |
| GO:0048589 | GO-bp | Annotation by Michelle Graham. GO Biological Process: developmental growth | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0050665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF810 | Panther | JGI | ISS | ||
| PF07714 | PFAM | Protein tyrosine kinase | JGI | ISS | |
| PF08263 | PFAM | Leucine rich repeat N-terminal domain | JGI | ISS | |
| UniRef100_G7LJE3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7LJE3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K3Z9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K3Z9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g12305 not represented in the dataset |
Glyma08g12305 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g29150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g116600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g12305.2 sequence type=transcript gene model=Glyma08g12305 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTGTGGGTGGTGGGGGGTGAAGAGAGAGAAACTGAGACAAGAGACAAAAGAACCCCAACAAATATTGTAACATGATGAAGGTGGTCGGAGAGAGGTTTCTCTGAGATCCTCTTCACAAAGGCAGCAATTCAACAACGTAACAACCTTCTTCATCATTTCAATCTTTTATTTTGCTGCCTTTTTTTTTTTTTTTCTCATTCCTTGTCTCAGTTTACCTCCCCCCCCTCCCCCCCCACACCTGTCACCACCAACGTGCATTGCATTGCATTGCATTGCATCATATCATCAAACATTGTTGATCCTTCAGTTTCAACGCACAAAGGGACTTCTTTTCCTGCACCCTTTTCTCCCATTTGCATGCCCCAGCCCACATTGCTTGGAATCATAGAGAGGATTAATTGAGCTGGGTGTGCTTTTGTTGAGCAAAAGGTTGTAAGGAAGAGATTGATACAAATAATGAGGGACCCTGATACCAAGAGCTTCAATTGTTTTTGCTTTCCATTGTAAAGTATTAAGTTTTGCTTGCATAGTTAGTGAATTTCCGGCTGCTTCATCCAAATAGGTGGAAGGGTTTCTATGTACAGAAAAAACCTTCCAATTTTGTAAATATGATATGACATATCATATAGCTTCCTGACTTTAAAGAGATATAGATATTGTCGCTACCAAAGTGACATTGCCTTCTCATAGCAATGGAAAGCATATGGGGGCCATTTGGATTATGGCTCCGAATTTATGTTGGATTGATTTCTCTGTGGGGAACTCAACAGTGTTCGTCTCTGAACGATGAAGGATTAACCTTGTTGGAATTTCGGGGAAGAATAACTTCTGATCCTTTTGCTGCTCTGGCAAATTGGAATCCAAATGATTGCAACCCTTGCAAATGGCTGGGTGTCCGTTGTGTTGATGGTCAAGTGCAATCACTGGTCCTACCTGATCTATCTTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTAGTCATCTAAAATCCCTTGTACTATACAAGAACAGTTTTTCTGGTACCATTCCCAAAGAACTTGGAGATCTAGACAAGCTGGAGTTATTGGATTTAAGGGGGAATGACTTGACTGGATGTATCCCAGCAGAAATTGCCAGGGTGTTGTTGTCAAAAAACCTGTTGGTTTGTGACAATAAATTTGAAGGCAGTGATTCTCAAGAGCTCAGAAAGCTAAGGTTGCCCTCTAATAACAATAACAGAAAGTTTGTGCACCAGTTCAAGCTAGGAAAGGCTACTCCTCATGCCTATGAAGAGAAATATTGTGATAATCTGACTAGTTCTGATGAGTCAGAGTTTGTCCAGAATGTAGTTGATTCAGCACGACGTAAGTTGCTTGATCAGTCCAGTAACCTTGCAGCTGAACATTTCAGTGGTGGGCCTGCTATAGAGATCAGTTCTATTCCAATTGCCCAGAGCAGTGGAGCTTTCCCAGCTGTGCCAGACACCAATAAGAAACAAAATCAGTCACCTGCACCATTGCCTTCACCTTCTGTTTCTCCACATGTGAATCAAGCAAGTCAACAAAATTCACCTAATGGTGCATCTGGAAAATTATGGAAGTATATCATTATAATCACAGGTGTTGCTGTCTTGGTCATTCTTGTTGTGATCATGCTTTGCATTTGGCGAAAACGAGCAGCAAAAGTAATAAAGCCCTGGAAGACAGGAATAAGTGGACAGTTGCAGAAAGCATTTATAACAGGGGTCCCCAAGTTGAATCGGGGAGAGCTGGAAACAGCCTGTGAAGATTTCAGCAATATTATTAATAGTTTTGATGAATGCACCGTATACAAAGGAACACTATCCAGTGGAGTCGAGATTGCTGTCGATTCAACTATTGTTGCTTCTGCCAATGATTGGTCAAAGAACATGGAGACAGCCTATCGCAAAAAGATTGCTGCATTGTCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGGTATTGTGACGAAGAAGAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCAAATGGAAACTTATTTGAGCATCTGCATGTTAAGGAAGTTGAGCCTCTTGACTGGAGCACAAGGATGAGGGTTATTATGGGCACGGCTTATTGTCTTCAGTATATGCACCATGATCTAAATCCACCTGTAGCTCATTCCAACCTCAATTCAATTGCTATATTATTAACAGATGACTTTGCTGCTAAGATATCAGAGATCTCTTTCGGCAAGCATGCAAAAACCAACACAACTGGAGATGAATCACATAAATCTTCTGAGTTGCCACCCCAGGCTGATCCCGAAACCGATGTCTATAACTTTGGAGTATTGTTGCTTGAAATCATTTCTGGGAAACTACCTTACTCTGAAGAACAAGGCCACCTTGCCAACTGGGCTGCTGAGCACTTGAACGATAAGCAAAGCATCAGCTATCTGATCGATCCCACGCTGCAGTCCTTCAAAGACGAAGAACTTGATGTCATCTGTGAGGTGATCAAAGATTGTCTTCAATCTGATCCAAGGTTAAGATCTACAATGAAGGAAATAACTCCCAGATTACGGGAAGTGCTTCATGTATCACCCGAGCAAGCTGTCCCAAGACTCTCTCCACTCTGGTGGGCTGAACTGGAGATCTTATCAGTGGAGGCCACTTAAAAAAGTTCTATCTAACTCTCTTCTTTGTGTTCTAAGTCAAGCCTCTCTCTAACCTTTACCATGCTGGAAGAGTACAGCTTTCTGATAATGCTATATGGTATTTGCTACTCATTCTTTAATTCTATTTGTTCTTTTGTAAGTCCATATAATCACAATACCATAGCTATTATTGTCCCTGTGGAAGCGTGTTATGTAATTTTGCAAGTGGGGTGTTGTAAATTGTACTTTTGTTGATGAATATTGAGATGTAAAAAAAGTCTCGACATATTAATTGGTATTTCAGTCTCAATGAACATGCAACTTCTATACACAGGTCTATTCAATTATTAATGAAACTTGTAAGTCGTAA
>Glyma08g12305.1 sequence type=CDS gene model=Glyma08g12305 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAGCATATGGGGGCCATTTGGATTATGGCTCCGAATTTATGTTGGATTGATTTCTCTGTGGGGAACTCAACAGTGTTCGTCTCTGAACGATGAAGGATTAACCTTGTTGGAATTTCGGGGAAGAATAACTTCTGATCCTTTTGCTGCTCTGGCAAATTGGAATCCAAATGATTGCAACCCTTGCAAATGGCTGGGTGTCCGTTGTGTTGATGGTCAAGTGCAATCACTGGTCCTACCTGATCTATCTTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTAGTCATCTAAAATCCCTTGTACTATACAAGAACAGTTTTTCTGGTACCATTCCCAAAGAACTTGGAGATCTAGACAAGCTGGAGTTATTGGATTTAAGGGGGAATGACTTGACTGGATGTATCCCAGCAGAAATTGCCAGGGTGTTGTTGTCAAAAAACCTGTTGGTTTGTGACAATAAATTTGAAGGCAGTGATTCTCAAGAGCTCAGAAAGCTAAGGTTGCCCTCTAATAACAATAACAGAAAGTTTGTGCACCATATACAACAAGAACAACATGGTGAAAAAAGTATGTGCCATAAAAATTTCAAGCAATCGAACATGGAAGATTCATTTGTTATTCCACTTAAAGGAGCACTAAAAAATTACCTCAATGCTGTAATTGCTGTGGCACTGCCACTGTTCAAGCTAGGAAAGGCTACTCCTCATGCCTATGAAGAGAAATATTGTGATAATCTGACTAGTTCTGATGAGTCAGAGTTTGTCCAGAATGTAGTTGATTCAGCACGACGTAAGTTGCTTGATCAGTCCAGTAACCTTGCAGCTGAACATTTCAGTGGTGGGCCTGCTATAGAGATCAGTTCTATTCCAATTGCCCAGAGCAGTGGAGCTTTCCCAGCTGTGCCAGACACCAATAAGAAACAAAATCAGTCACCTGCACCATTGCCTTCACCTTCTGTTTCTCCACATGTGAATCAAGCAAGTCAACAAAATTCACCTAATGGTGCATCTGGAAAATTATGGAAGTATATCATTATAATCACAGGTGTTGCTGTCTTGGTCATTCTTGTTGTGATCATGCTTTGCATTTGGCGAAAACGAGCAGCAAAAGTAATAAAGCCCTGGAAGACAGGAATAAGTGGACAGTTGCAGAAAGCATTTATAACAGGGGTCCCCAAGTTGAATCGGGGAGAGCTGGAAACAGCCTGTGAAGATTTCAGCAATATTATTAATAGTTTTGATGAATGCACCGTATACAAAGGAACACTATCCAGTGGAGTCGAGATTGCTGTCGATTCAACTATTGTTGCTTCTGCCAATGATTGGTCAAAGAACATGGAGACAGCCTATCGCAAAAAGATTGCTGCATTGTCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGGTATTGTGACGAAGAAGAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCAAATGGAAACTTATTTGAGCATCTGCATGTTAAGGAAGTTGAGCCTCTTGACTGGAGCACAAGGATGAGGGTTATTATGGGCACGGCTTATTGTCTTCAGTATATGCACCATGATCTAAATCCACCTGTAGCTCATTCCAACCTCAATTCAATTGCTATATTATTAACAGATGACTTTGCTGCTAAGATATCAGAGATCTCTTTCGGCAAGCATGCAAAAACCAACACAACTGGAGATGAATCACATAAATCTTCTGAGTTGCCACCCCAGGCTGATCCCGAAACCGATGTCTATAACTTTGGAGTATTGTTGCTTGAAATCATTTCTGGGAAACTACCTTACTCTGAAGAACAAGGCCACCTTGCCAACTGGGCTGCTGAGCACTTGAACGATAAGCAAAGCATCAGCTATCTGATCGATCCCACGCTGCAGTCCTTCAAAGACGAAGAACTTGATGTCATCTGTGAGGTGATCAAAGATTGTCTTCAATCTGATCCAAGGTTAAGATCTACAATGAAGGAAATAACTCCCAGATTACGGGAAGTGCTTCATGTATCACCCGAGCAAGCTGTCCCAAGACTCTCTCCACTCTGGTGGGCTGAACTGGAGATCTTATCAGTGGAGGCCACTTAA >Glyma08g12305.2 sequence type=CDS gene model=Glyma08g12305 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAGCATATGGGGGCCATTTGGATTATGGCTCCGAATTTATGTTGGATTGATTTCTCTGTGGGGAACTCAACAGTGTTCGTCTCTGAACGATGAAGGATTAACCTTGTTGGAATTTCGGGGAAGAATAACTTCTGATCCTTTTGCTGCTCTGGCAAATTGGAATCCAAATGATTGCAACCCTTGCAAATGGCTGGGTGTCCGTTGTGTTGATGGTCAAGTGCAATCACTGGTCCTACCTGATCTATCTTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTAGTCATCTAAAATCCCTTGTACTATACAAGAACAGTTTTTCTGGTACCATTCCCAAAGAACTTGGAGATCTAGACAAGCTGGAGTTATTGGATTTAAGGGGGAATGACTTGACTGGATGTATCCCAGCAGAAATTGCCAGGGTGTTGTTGTCAAAAAACCTGTTGGTTTGTGACAATAAATTTGAAGGCAGTGATTCTCAAGAGCTCAGAAAGCTAAGGTTGCCCTCTAATAACAATAACAGAAAGTTTGTGCACCAGTTCAAGCTAGGAAAGGCTACTCCTCATGCCTATGAAGAGAAATATTGTGATAATCTGACTAGTTCTGATGAGTCAGAGTTTGTCCAGAATGTAGTTGATTCAGCACGACGTAAGTTGCTTGATCAGTCCAGTAACCTTGCAGCTGAACATTTCAGTGGTGGGCCTGCTATAGAGATCAGTTCTATTCCAATTGCCCAGAGCAGTGGAGCTTTCCCAGCTGTGCCAGACACCAATAAGAAACAAAATCAGTCACCTGCACCATTGCCTTCACCTTCTGTTTCTCCACATGTGAATCAAGCAAGTCAACAAAATTCACCTAATGGTGCATCTGGAAAATTATGGAAGTATATCATTATAATCACAGGTGTTGCTGTCTTGGTCATTCTTGTTGTGATCATGCTTTGCATTTGGCGAAAACGAGCAGCAAAAGTAATAAAGCCCTGGAAGACAGGAATAAGTGGACAGTTGCAGAAAGCATTTATAACAGGGGTCCCCAAGTTGAATCGGGGAGAGCTGGAAACAGCCTGTGAAGATTTCAGCAATATTATTAATAGTTTTGATGAATGCACCGTATACAAAGGAACACTATCCAGTGGAGTCGAGATTGCTGTCGATTCAACTATTGTTGCTTCTGCCAATGATTGGTCAAAGAACATGGAGACAGCCTATCGCAAAAAGATTGCTGCATTGTCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGGTATTGTGACGAAGAAGAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCAAATGGAAACTTATTTGAGCATCTGCATGTTAAGGAAGTTGAGCCTCTTGACTGGAGCACAAGGATGAGGGTTATTATGGGCACGGCTTATTGTCTTCAGTATATGCACCATGATCTAAATCCACCTGTAGCTCATTCCAACCTCAATTCAATTGCTATATTATTAACAGATGACTTTGCTGCTAAGATATCAGAGATCTCTTTCGGCAAGCATGCAAAAACCAACACAACTGGAGATGAATCACATAAATCTTCTGAGTTGCCACCCCAGGCTGATCCCGAAACCGATGTCTATAACTTTGGAGTATTGTTGCTTGAAATCATTTCTGGGAAACTACCTTACTCTGAAGAACAAGGCCACCTTGCCAACTGGGCTGCTGAGCACTTGAACGATAAGCAAAGCATCAGCTATCTGATCGATCCCACGCTGCAGTCCTTCAAAGACGAAGAACTTGATGTCATCTGTGAGGTGATCAAAGATTGTCTTCAATCTGATCCAAGGTTAAGATCTACAATGAAGGAAATAACTCCCAGATTACGGGAAGTGCTTCATGTATCACCCGAGCAAGCTGTCCCAAGACTCTCTCCACTCTGGTGGGCTGAACTGGAGATCTTATCAGTGGAGGCCACTTAA
>Glyma08g12305.1 sequence type=predicted peptide gene model=Glyma08g12305 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESIWGPFGLWLRIYVGLISLWGTQQCSSLNDEGLTLLEFRGRITSDPFAALANWNPNDCNPCKWLGVRCVDGQVQSLVLPDLSLEGTLAPELGKLSHLKSLVLYKNSFSGTIPKELGDLDKLELLDLRGNDLTGCIPAEIARVLLSKNLLVCDNKFEGSDSQELRKLRLPSNNNNRKFVHHIQQEQHGEKSMCHKNFKQSNMEDSFVIPLKGALKNYLNAVIAVALPLFKLGKATPHAYEEKYCDNLTSSDESEFVQNVVDSARRKLLDQSSNLAAEHFSGGPAIEISSIPIAQSSGAFPAVPDTNKKQNQSPAPLPSPSVSPHVNQASQQNSPNGASGKLWKYIIIITGVAVLVILVVIMLCIWRKRAAKVIKPWKTGISGQLQKAFITGVPKLNRGELETACEDFSNIINSFDECTVYKGTLSSGVEIAVDSTIVASANDWSKNMETAYRKKIAALSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGNLFEHLHVKEVEPLDWSTRMRVIMGTAYCLQYMHHDLNPPVAHSNLNSIAILLTDDFAAKISEISFGKHAKTNTTGDESHKSSELPPQADPETDVYNFGVLLLEIISGKLPYSEEQGHLANWAAEHLNDKQSISYLIDPTLQSFKDEELDVICEVIKDCLQSDPRLRSTMKEITPRLREVLHVSPEQAVPRLSPLWWAELEILSVEAT* >Glyma08g12305.2 sequence type=predicted peptide gene model=Glyma08g12305 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESIWGPFGLWLRIYVGLISLWGTQQCSSLNDEGLTLLEFRGRITSDPFAALANWNPNDCNPCKWLGVRCVDGQVQSLVLPDLSLEGTLAPELGKLSHLKSLVLYKNSFSGTIPKELGDLDKLELLDLRGNDLTGCIPAEIARVLLSKNLLVCDNKFEGSDSQELRKLRLPSNNNNRKFVHQFKLGKATPHAYEEKYCDNLTSSDESEFVQNVVDSARRKLLDQSSNLAAEHFSGGPAIEISSIPIAQSSGAFPAVPDTNKKQNQSPAPLPSPSVSPHVNQASQQNSPNGASGKLWKYIIIITGVAVLVILVVIMLCIWRKRAAKVIKPWKTGISGQLQKAFITGVPKLNRGELETACEDFSNIINSFDECTVYKGTLSSGVEIAVDSTIVASANDWSKNMETAYRKKIAALSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGNLFEHLHVKEVEPLDWSTRMRVIMGTAYCLQYMHHDLNPPVAHSNLNSIAILLTDDFAAKISEISFGKHAKTNTTGDESHKSSELPPQADPETDVYNFGVLLLEIISGKLPYSEEQGHLANWAAEHLNDKQSISYLIDPTLQSFKDEELDVICEVIKDCLQSDPRLRSTMKEITPRLREVLHVSPEQAVPRLSPLWWAELEILSVEAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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