Report for Sequence Feature Glyma08g12290
Feature Type: gene_model
Chromosome: Gm08
Start: 8968203
stop: 8970311
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g12290
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G18700 AT
Annotation by Michelle Graham. TAIR10: CBL-interacting protein kinase 12 | chr4:10289110-10290579 REVERSE LENGTH=489
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0007165 GO-bp
Annotation by Michelle Graham. GO Biological Process: signal transduction
SoyBase N/A ISS
GO:0010118 GO-bp
Annotation by Michelle Graham. GO Biological Process: stomatal movement
SoyBase N/A ISS
GO:0019722 GO-bp
Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: kinase activity
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG0583
KOG
Serine/threonine protein kinase
JGI ISS
PTHR24343 Panther
SERINE/THREONINE KINASE
JGI ISS
PTHR24343:SF45 Panther
SERINE/THREONINE-PROTEIN KINASE PTK1,2/STK1,2
JGI ISS
PF00069 PFAM
Protein kinase domain
JGI ISS
PF03822 PFAM
NAF domain
JGI ISS
UniRef100_Q84XC0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Calcineurin B-like-interacting protein kinase n=1 Tax=Pisum sativum RepID=Q84XC0_PEA
SoyBase E_val: 0 ISS
UniRef100_UPI00023382B4 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023382B4 related cluster n=1 Tax=unknown RepID=UPI00023382B4
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g12290
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g12290
Paralog Evidence Comments
Glyma05g29140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g12290 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g116500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g12290
Coding sequences of Glyma08g12290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g12290.1 sequence type=CDS gene model=Glyma08g12290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGAGGTGGCGGCGCCGAAGAAGGAAAACCCGAATCTTCTCCTTGGGCGGTTCGAGCTCGGAAAGCTCCTCGGGCACGGAACCTTCGCGAAGGTCCACCACGCGCGCAACATCAAAACCGGAGAAGGAGTCGCCATCAAGATCATCAACAAGGAGAAAATCCTAAAGGGTGGTTTGGTCTCCCACATCAAGCGCGAGATCTCCATCCTCCGCCGCGTGCGCCACCCCAACATCGTGCAACTCTTCGAAGTCATGGCCACAAAGACCAAGATCTACTTCGTCATGGAATTCGTCCGTGGCGGCGAACTCTTCAACAAGGTCGCAAAGGGAAGGTTAAAAGAAGAAGTCGCCAGAAAGTACTTCCAACAGTTGGTTTCCGCGGTGGAGTTTTGCCACGCGCGCGGCGTGTTCCACAGGGATTTAAAGCCCGAGAATTTGTTGCTGGACGAGGATGGGAACCTTAAAGTCTCCGACTTTGGACTCAGTGCCGTGTCGGACCAGATAAGGCATGACGGGCTGTTCCACACGTTTTGCGGAACACCCGCGTATGTTGCTCCTGAGGTTTTGGCGCGGAAAGGGTACGATGGTGCAAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTTTTGATGGCGGGTTATTTGCCCTTCCATGACCGTAACGTTATGGCTATGTATAAGAAGATTTACAAGGGTGAGTTTCGGTGTCCCAGGTGGTTTTCTTCTGAACTTACAAGACTTTTCTCTAGGCTTCTCGATACTAACCCTCAGACAAGGATTTCTATTCCCGAAATCATGGAGAATCGCTGGTTCAAGAAGGGTTTCAAGCAGATTAAGTTTTATGTGGAGGATGATAGAGTTTGTAGTTTTGATGAGAAACAGCTGCAGCATCATGATGGCGATGATTATTTGGCAACATCGGATTCTGAGGTTGAGATTAGAAGGAAGAATAGTAATTGCAATAGTACTAGTAATGGTAATTCGTTGCCGAGGCCTGCGAGTTTGAATGCGTTTGACATAATATCGTTTTCTCAAGGCTTTGATCTATCAGGGTTGTTTGAGGAGAAGGGTGATGAGGCGAGGTTTGTGTCTTCTGCTCCGGTGTCGAAGATTATATCGAAATTGGAGGAGGTTGCTCAGTTGGTTAGCTTCACTGTGAGGAAGAAAGATTGCAGGGTGAGCTTGGAGGGGTGTAGAGAAGGTGTGAAAGGGCCTTTGACTATTGCTGCTGAGATTTTTGAGTTGACACCTTCCTTGGTGGTGGTGGAGGTGAAGAAAAAAGGAGGGGATAAGGCAGAGTATGAGAAGTTTTGTAACTCTGAGCTGAAACCCGCGTTGGAGAATTTGGGGATGGAGGATTCTGCTTCTTCTTCTTCTTCTTGTCATCAATCTACACACACTCAATCTGAATTCCAACAACAACATCGAACATTTTCTGACTCTGCCCTTAACAGACATTCAGATAATAATGAATGCTTATATGATCAAGAGTTGGGTCTAGCAGAAGAGACTAGTATCCCACAACTTGGTGAACCAAAGTTCGAATTTCAACAGGAAAATGTGCCCATGTTTACTATTTGA
Predicted protein sequences of Glyma08g12290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g12290.1 sequence type=predicted peptide gene model=Glyma08g12290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEVAAPKKENPNLLLGRFELGKLLGHGTFAKVHHARNIKTGEGVAIKIINKEKILKGGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEFVRGGELFNKVAKGRLKEEVARKYFQQLVSAVEFCHARGVFHRDLKPENLLLDEDGNLKVSDFGLSAVSDQIRHDGLFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDRNVMAMYKKIYKGEFRCPRWFSSELTRLFSRLLDTNPQTRISIPEIMENRWFKKGFKQIKFYVEDDRVCSFDEKQLQHHDGDDYLATSDSEVEIRRKNSNCNSTSNGNSLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSSAPVSKIISKLEEVAQLVSFTVRKKDCRVSLEGCREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKAEYEKFCNSELKPALENLGMEDSASSSSSCHQSTHTQSEFQQQHRTFSDSALNRHSDNNECLYDQELGLAEETSIPQLGEPKFEFQQENVPMFTI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
