SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09850 | AT | Annotation by Michelle Graham. TAIR10: xylem bark cysteine peptidase 3 | chr1:3201848-3203875 FORWARD LENGTH=437 | SoyBase | E_val: 4.00E-82 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0008234 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity | SoyBase | N/A | ISS |
| KOG1542 | KOG | Cysteine proteinase Cathepsin F | JGI | ISS | |
| PTHR12411 | Panther | CYSTEINE PROTEASE FAMILY C1-RELATED | JGI | ISS | |
| PTHR12411:SF44 | Panther | CATHEPSIN L-RELATED | JGI | ISS | |
| PF00112 | PFAM | Papain family cysteine protease | JGI | ISS | |
| PF08246 | PFAM | Cathepsin propeptide inhibitor domain (I29) | JGI | ISS | |
| UniRef100_O64458 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 34 kDa maturing seed protein n=1 Tax=Glycine max RepID=O64458_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O64458 | UniRef | Annotation by Michelle Graham. Best UniRef hit: 34 kDa maturing seed protein n=1 Tax=Glycine max RepID=O64458_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g12270 not represented in the dataset |
Glyma08g12270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g29131 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g116300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g12270.1 sequence type=CDS gene model=Glyma08g12270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTTCCTTGTGTTGCTTCTTTTCTCCCTCTTAGGTCTCTCTTCTAGTTCCAGCATATCAACTCATCGTTCCATATTGGACCTTGACCTAACCAAGTTTACCACACAGAAACAGGTGTCTTCACTGTTCCAACTATGGAAGAGTGAGCATGGACGTGTCTACCATAACCACGAAGAAGAGGCAAAGAGACTTGAGATTTTCAAGAATAACTTGAACTATATCAGGGACATGAATGCAAACAGAAAATCACCCCATTCTCATCGTTTAGGATTGAACAAGTTTGCTGACATCACTCCTCAAGAGTTCAGCAAAAAGTACTTGCAAGCTCCCAAGGATGTGTCGCAGCAAATCAAAATGGCCAACAAGAAAATGAAGAAGGAACAATATTCTTGTGACCATCCACCTGCATCATGGGATTGGAGGAAAAAAGGTGTCATCACCCAAGTAAAGTACCAAGGGGGCTGTGGAAGCGGTTGGGCGTTTTCTGCCACGGGAGCCATAGAAGCAGCACATGCAATAGCAACAGGAGACCTTGTTAGCCTTTCTGAACAAGAACTCGTAGACTGTGTGGAAGAAAGCGAAGGTTGTTACAATGGATGGCACTATCAATCGTTCGAATGGGTTTTAGAACATGGTGGGATTGCCACTGATGATGATTATCCTTACAGAGCTAAAGAGGGTAGATGCAAAGCCAATAAGATACAAGACAAGGTTACAATTGACGGATATGAAACTCTAATAATGTCAGATGAGAGTACAGAATCAGAGACAGAGCAAGCGTTCTTAAGCGCCATCCTTGAGCAACCAATTAGTGTCTCCATTGATGCAAAAGATTTTCATTTATACACCGGGGGAATTTATGATGGAGAAAACTGTACAAGTCCGTATGGGATTAATCACTTTGTTTTACTTGTGGGTTATGGTTCAGCGGATGGTGTAGATTACTGGATAGCGAAAAATTCATGGGGAGAAGATTGGGGAGAAGATGGTTACATTTGGATCCAAAGAAACACGGGTAATTTATTAGGAGTGTGTGGGATGAATTATTTCGCTTCATACCCAACCAAAGAGGAATCAGAAACACTGGTGTCTGCTCGCGTTAAAGGTCATCGAAGAGTTGATCACTCTCCTCTTTGA
>Glyma08g12270.1 sequence type=predicted peptide gene model=Glyma08g12270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGFLVLLLFSLLGLSSSSSISTHRSILDLDLTKFTTQKQVSSLFQLWKSEHGRVYHNHEEEAKRLEIFKNNLNYIRDMNANRKSPHSHRLGLNKFADITPQEFSKKYLQAPKDVSQQIKMANKKMKKEQYSCDHPPASWDWRKKGVITQVKYQGGCGSGWAFSATGAIEAAHAIATGDLVSLSEQELVDCVEESEGCYNGWHYQSFEWVLEHGGIATDDDYPYRAKEGRCKANKIQDKVTIDGYETLIMSDESTESETEQAFLSAILEQPISVSIDAKDFHLYTGGIYDGENCTSPYGINHFVLLVGYGSADGVDYWIAKNSWGEDWGEDGYIWIQRNTGNLLGVCGMNYFASYPTKEESETLVSARVKGHRRVDHSPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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