Glyma08g12240 - SoyBase

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Report for Sequence Feature Glyma08g12240

Feature Type:	gene_model
Chromosome:	Gm08
Start:	8898018
stop:	8906689
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34150	AT	Annotation by Michelle Graham. TAIR10: SCAR family protein \| chr2:14419432-14423259 REVERSE LENGTH=821	SoyBase	E_val: 1.00E-103	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0051127	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of actin nucleation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0031209	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: SCAR complex	SoyBase	N/A	ISS
GO:0043229	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular organelle	SoyBase	N/A	ISS
GO:0071944	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell periphery	SoyBase	N/A	ISS
GO:0003785	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin monomer binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR12902	Panther	WASP-1	JGI		ISS
UniRef100_G7LIR6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SCAR-like protein n=1 Tax=Medicago truncatula RepID=G7LIR6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023382B3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023382B3 related cluster n=1 Tax=unknown RepID=UPI00023382B3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g12240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12240

Paralog	Evidence	Comments
Glyma05g29100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g116000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g12240

Limit To All Plant Sequences

>Glyma08g12240.2   sequence type=CDS   gene model=Glyma08g12240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCTGGTGAGGTTGCAGGTGAGGAATGAGTTCGGTTTGGGGCAGCCTGAGTTGTACAGAAAGACAAACAGAGAGGACCCTAAAGCTGTGTTGGATGGTGTGGCTGTGGCTGGTCTTGTCGGGATCTTGAGGCAACTTGGTGATCTTGCTGATTTCGCAGCAGAGGTTTTTCATGGTCTGCAAGAGCAAGTAATGACAACAGCTTCCAGGAGTCATAGATTGACGTTTCGTGTTCAAAACATTGAAGCTTCATTACCTGCCTTGGAGAAGGCTGTATTGGCACAAACAAGTCACATACATTTAGCTTACACAGCTGGTTGTGAATGGCATCCACGCATGAAAGCTGCTCAAAATCATTTCATTTACAATGACTTGCCTCACTTTATTATGGATTCATATGAAGAATGTTGTGACCCTCCACGTGTTCACTTGCTTGATAAATTTGATACTGGTGGCCCAGGATCTTGTTTCAGGAGATATTCAGATCCAACCTTCTTTCAAAGAGTATCTACAGATTCAGACAAATCTTACTCTGGGAAAACTGAAAAAGCAAGGGAATCTCATAAAAGCAAGAAGAAAAGGTCACGAAGGAATGGAGACATTTTAAGGGGTGAACAGAGTCATGGCACTAGTGGCAGAATGAAATCTATTTCTTCTGCTATCAATGGGCGAACTTCTTCCTCACAAACAACCTCCACCATAGATATGACAATGAAATCAGATCTGGAACATTATTCAAATTCTTTTGATTCAAAATCTGGTGCTGGCTACATTGAATGTGTTTTCCATCCAAGTAATTCTAAGCAATCTGATGAGCCAGATTATAAAGCACCATCCTCTACAAAATTGAAACGGAAAAATGATACTCTGTCATCAGTATCTCATCATATAGATGATAGTATTTCACATGATACATTGGAAAAGCAAGTTGCCTCTAGTTCATCTGGTGTTACTTGGGATGAAAAGGAAGAGATAGTGGAATCTAAGAGTCAAGCATGTGATATAGATAAAACTCCTGAGAGGCTTGTGGAGAACCATGACTTAGATATGCATGTAAATGAGGCTGTTACCATAACCAGCATTGACTACAATCATATCCTATTTAATGAAGAAAGCAACCTGAAACCAGTCTCCAACAGGGTTCAAACTGATGATATTGATAGTGAACCTGATAATTACGTGGATGCTCTCAACACCATTGAATCAGAATCTGAAAATGATATTGATTATATAACAAAACGAGAGGTGCAGCAGTTATCTTCACGTGTCACTCGTGGAACAATTGAAAATGGAGTTACTGAAGCTCCTCCCAATTTATTGGACAATAATTTATCTGATGTCGTTTCTCAGACTGATTATACTGTTCCCTTAAATGAAGAAAAAGGGAATTTAGCCGACTCACTGCAAGAAAATCGTGTTCTTGATCTTGTATCAAAGCCAAATGCATCTAATTTGGGATATGTTAGTCCATCTGATGATCTTGATAGAGAAAATATGACCAGAGACACAGCTTCCTTAAACAAAGAACCATTCAGGGATTTGTCTGACTCACTGCAAGATATTCCTCCTCTCACATCAGAGCCACATGCATCTAATTTGGGACCTGAAAATCCATCAGATGTTCCTTATAGTGAAGAAATGACCAGAGACACCGTTTGCTTCAATAAAGAAATGTTTGGGAATTTGCCTGACTTGTTGCAAGAAATTTCTCCTCTCACATCAGAGCCACATGCATCTAATTTGGGACCTGGGCATCCATCAGATGTTCCTTATGGTGAAGAAATGACCAGAGACACTGTTTGCTTCAACAAAGAAACATTCAGGTATTTGCCCGACTCAATGCAAGAAATTCCTCCTCTCACAATAGAGCCACGTACATCAAATTTGGGACCTGTGAATCCATCAAATGCTCCTTATAGTCAAGAAACGACCACTGATACTATTTCCTTAAACAAAGAAATGTTTGGAAATTTGCCCAACTCATTGCAAGAAACTCCTGCTCTAACATTAGAGCCACATGCATCTAATTTGGCATCTGTGAGTCCATCAGATATTTCTGTTAGCAAAGGGATAGCCAAGAATATAGCTGATTCTCATCACCCCAAGACTCCTGCCTGTGAGCAGGTTCCTTGCACAATTGAAAATTCTGTTTTGGATAACTCAGTATGCACTGATACCTACATTGGTTCTTCTACTGTTAATGATACAGTGTCAGCACCAATTGAGACTGATATATCATTTTCTGGTTCCAATAACTCTAATTTACCAGATGAGGAAGCAGGTAAGATCAACAACAATATCTGCAAATCTGAAGAGACTCGTAGAGAGTCTTTGGCTGATCATTCAGTTAGGTTCTGGACTAATGGTGGATTATTAGGACTTGAGCCATCAAAACCTCCTGACTTTAACAAGTCAACTTCTTTAAGTCAAGGGTCTTTGAGCACTAAAAGTGAAACAGATGGTGGTTCACATCATAATTCAATGCAAAAGAGCAATGGTTATAAAGAGGAACGGGAATCATCAGAAGACGTTGCTGAGCAGATTCTAAAGGAACCAAGTTCTAGATTCTTAACATCAGGCCATAATGATGACCAAGCTTGTATCTCTGAAAAGGCCACTGGCAATTCTCAGCAGAGTAATGGATTTTGTCAGATTGAGAGGAACAGTTTAGGGGAAATCAGGGTAGCTGCACCTGAAAGTGTTCTCCCATCGATCCTTGACACAAAGGACATTACTGAACCCAACCAGGGAAATGGTGAAAACTCATCCCGTGTGTTTGGACTTAGTCGTAGATTACTAATAAATAGCTTTCAGCGGAAAGTTTCTTTTGATGAAAAATTGGAACGTTATAATTCTCTGAAATCTGTTATATTGGACCAGAGTGGACAAAATGGCATTGTAGGACAGTCACTTCCTGAGACAACAACCTCCAAAGAGAAAGTTGGTTCTGGATATCCTATAAAGTCACTTCCTCCTTCACCTCCACTTGAACATATGAAAATATCCTTCCATCCTGTCAGTGGACTTGAGATCTCGAAACTAAAATTGAAATTTCCTGATGGCAGTAATCGTCATGAAAGCTTAAAGGATGTGTTTCCTTCTTTCCAGTTGGTCCCTGAAGCTTCCCTTCCTCTGGATGGTTTAGTTTCTCACTCAGATGATGATGACACTTTCTGTAGATCATCTCCATATATATCAGATGATGGCCGAAGCCCTCGCTCTGACTATAATTCTGAGCAGTGGGAATCTGATGAAACTCCTGAAAACAGTGACCAAGGGGTACATGATTCTCCTCGCAGAAGGTCATCAGCTGAATCTGTGTCCATTGATGATACCAATGTAAGAAGTGGACAAGGTACATGTACTACAAATGGTGTGGAACATTCTCTATCTAGGCCTTTACTTGATTTTCCAAGTTATGATAATGTTAATCCTGCACTTGAGAAAGAAAGTAAAAGACACTCCAAATGCAATAATGTTATGTCACATAGTCATGCAGAGCCTACACAACCACCACCTCCTCCTCCACCTCTTCCTCCAACGCAATGGCGAGTCTCAAAACCACAGTTGGATATGACAAATGGGACACACCATTTGTCTGAAGATGCTGAACATATTGATGATCACGGTATTCCACATTCTACTATCTTCCAGCAGCCTAGGCTCACCCAGGTTGAGCAATTACAAATTAATCACGATGATCATGAATCTTATAACAACATTATATATAGATTGAAGGACAAGCTGGATCCGCAGAAGTTGAAGGGTCAGAAGGAAGCAAACCAGTTGAAAATGGGAAAGGAGACGGATGAAAGAGAAGATTTCCTATATCAAATCAGAACAAAAGCCTTCAACCTGAGGCCCACAGTAACAGGAAAGTCAAATGATACCACTGGTCCCACCGCAAACGTCAAAGTTACAGCAATTTTGGAGAAGGCAAATGCAATCCGTCAGGTTGTTGCGAGTGATGATGGTGAAGATGATGATAACTGGAGTGATACATGA

Predicted protein sequences of Glyma08g12240

Limit To All Plant Sequences

>Glyma08g12240.2   sequence type=predicted peptide   gene model=Glyma08g12240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLVRLQVRNEFGLGQPELYRKTNREDPKAVLDGVAVAGLVGILRQLGDLADFAAEVFHGLQEQVMTTASRSHRLTFRVQNIEASLPALEKAVLAQTSHIHLAYTAGCEWHPRMKAAQNHFIYNDLPHFIMDSYEECCDPPRVHLLDKFDTGGPGSCFRRYSDPTFFQRVSTDSDKSYSGKTEKARESHKSKKKRSRRNGDILRGEQSHGTSGRMKSISSAINGRTSSSQTTSTIDMTMKSDLEHYSNSFDSKSGAGYIECVFHPSNSKQSDEPDYKAPSSTKLKRKNDTLSSVSHHIDDSISHDTLEKQVASSSSGVTWDEKEEIVESKSQACDIDKTPERLVENHDLDMHVNEAVTITSIDYNHILFNEESNLKPVSNRVQTDDIDSEPDNYVDALNTIESESENDIDYITKREVQQLSSRVTRGTIENGVTEAPPNLLDNNLSDVVSQTDYTVPLNEEKGNLADSLQENRVLDLVSKPNASNLGYVSPSDDLDRENMTRDTASLNKEPFRDLSDSLQDIPPLTSEPHASNLGPENPSDVPYSEEMTRDTVCFNKEMFGNLPDLLQEISPLTSEPHASNLGPGHPSDVPYGEEMTRDTVCFNKETFRYLPDSMQEIPPLTIEPRTSNLGPVNPSNAPYSQETTTDTISLNKEMFGNLPNSLQETPALTLEPHASNLASVSPSDISVSKGIAKNIADSHHPKTPACEQVPCTIENSVLDNSVCTDTYIGSSTVNDTVSAPIETDISFSGSNNSNLPDEEAGKINNNICKSEETRRESLADHSVRFWTNGGLLGLEPSKPPDFNKSTSLSQGSLSTKSETDGGSHHNSMQKSNGYKEERESSEDVAEQILKEPSSRFLTSGHNDDQACISEKATGNSQQSNGFCQIERNSLGEIRVAAPESVLPSILDTKDITEPNQGNGENSSRVFGLSRRLLINSFQRKVSFDEKLERYNSLKSVILDQSGQNGIVGQSLPETTTSKEKVGSGYPIKSLPPSPPLEHMKISFHPVSGLEISKLKLKFPDGSNRHESLKDVFPSFQLVPEASLPLDGLVSHSDDDDTFCRSSPYISDDGRSPRSDYNSEQWESDETPENSDQGVHDSPRRRSSAESVSIDDTNVRSGQGTCTTNGVEHSLSRPLLDFPSYDNVNPALEKESKRHSKCNNVMSHSHAEPTQPPPPPPPLPPTQWRVSKPQLDMTNGTHHLSEDAEHIDDHGIPHSTIFQQPRLTQVEQLQINHDDHESYNNIIYRLKDKLDPQKLKGQKEANQLKMGKETDEREDFLYQIRTKAFNLRPTVTGKSNDTTGPTANVKVTAILEKANAIRQVVASDDGEDDDNWSDT*

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