Report for Sequence Feature Glyma08g12210
Feature Type: gene_model
Chromosome: Gm08
Start: 8874815
stop: 8883303
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g12210
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G29120 AT
Annotation by Michelle Graham. TAIR10: Hydrolase-like protein family | chr1:10174481-10178143 FORWARD LENGTH=455
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG4372
KOG
Predicted alpha/beta hydrolase
JGI ISS
PTHR12482 Panther
UNCHARACTERIZED
JGI ISS
PF05057 PFAM
Putative serine esterase (DUF676)
JGI ISS
UniRef100_G7LIR3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein FAM135B n=1 Tax=Medicago truncatula RepID=G7LIR3_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KSD8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSD8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g12210
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g12210
Paralog Evidence Comments
Glyma05g29070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g12210 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g115700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g12210
Coding sequences of Glyma08g12210
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g12210.1 sequence type=CDS gene model=Glyma08g12210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAACCGCTCCCTTCATTCACGCGCGCTGTGCTTACTCGCCTAGAATTTCCAATCGCAACAACAAGCCTAGTTCGCAACAAGGCCCCTTGGCTTCTTCGTCTTCTCATGCTTCCTCCTCCTCTTCACCCTCCAGTTCTAGCTTCTCTCACCCTTCTGGTACAAACAGTGGACAAAGACACCAGGGCCTTAGAGCTCAAGCTATGAGTACTGTCACACTTGGAAATTCTATTGCTAGCATAGGGAATTTGAAGAACGATCCTGATCATCTCCTTGTTCTTGTTCATGGTATCTTGGCTAGCACAGCAGACTGGACTTATGCGGAAGCAGAGTTGAAAAGGCGCCTTGGAAAAAACTTTTTAATTTATGTAAGTTCATCAAATACTTACACTAAGACATTTACTGGGATTGATGGAGCTGGAAAGCGATTAGCTGATGAAGTCTTGCAAGTTGTTAAAAAGACAAAGAGCCTGAAAAGAATCTCCTTTCTAGCCCATTCTCTGGGAGGCTTGTTTGCTAGATATGCAATTGCTGTTCTTTATTCACCTGATACTTATAGTAGGGACCAACCAGGTGATCTAGCAAACAGCATGACAGAAAATTCCCAGGGAACAACCCTTTCAAGAGGAGGGATGATTGCTGGGTTAGAGCCAATCAATTTTATAACTTTAGCAACACCACATCTTGGCGTGAGAGGAAAGAAGCAGCTTCCATTTCTGTTGGGTGTCCCAATCCTAGAAAAGCTTGCTGCACCTATAGCTCCTTTTTTTGTTGGTCAGACAGGTAGTCAGTTATTCCTTACTGATGGTAAACCTGACAAACCTCCTCTCCTATTGAGAATGGCTTCTGATTCTGATGATGGAAAGTTTTTATCTGCACTTGGAGCATTTAGATGTCGTATCATTTATGCTAATGTTTCATATGATCATATGGTTGGGTGGCGCACATCCTCTATAAGGAGGGAAACTGAGCTCAGTAAGAAGCCTCCTCGCCAATCTTTAGATGGATACAAGCACGTGGTTGATGTGGAATACTGTCCCCCAGTTCCTTCTGATGGCCCTAAATTTCCTCCAAAAGCAGTAAAAGCAAAAGAGGCAGCACAAAATGCGCCCAATACACAGAATACTGTGGAATATCATGAAATTGTAGAAGATGAGATGATTCGAGGATTACAGCAGTTGGGATGGAAAAAAGTTGATGTCAGCTTTCACTCAGCATTCTGGCCTTTCTTTGCTCATAACAACATTCATGTGAAAAATGAATGGTTTCACAATGCTGGTGTAGGAGTTATTGCTCATGTGGCCGAAAGCTTAAGACAGCTAGAAGCATCATCATTTTTGTCTGCTAGCTTGTAA
Predicted protein sequences of Glyma08g12210
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g12210.1 sequence type=predicted peptide gene model=Glyma08g12210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATAPFIHARCAYSPRISNRNNKPSSQQGPLASSSSHASSSSSPSSSSFSHPSGTNSGQRHQGLRAQAMSTVTLGNSIASIGNLKNDPDHLLVLVHGILASTADWTYAEAELKRRLGKNFLIYVSSSNTYTKTFTGIDGAGKRLADEVLQVVKKTKSLKRISFLAHSLGGLFARYAIAVLYSPDTYSRDQPGDLANSMTENSQGTTLSRGGMIAGLEPINFITLATPHLGVRGKKQLPFLLGVPILEKLAAPIAPFFVGQTGSQLFLTDGKPDKPPLLLRMASDSDDGKFLSALGAFRCRIIYANVSYDHMVGWRTSSIRRETELSKKPPRQSLDGYKHVVDVEYCPPVPSDGPKFPPKAVKAKEAAQNAPNTQNTVEYHEIVEDEMIRGLQQLGWKKVDVSFHSAFWPFFAHNNIHVKNEWFHNAGVGVIAHVAESLRQLEASSFLSASL*