SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G28590 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr4:14125367-14126828 REVERSE LENGTH=331 | SoyBase | E_val: 7.00E-118 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0042644 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast nucleoid | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_G7LIP5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Thioredoxin family protein n=1 Tax=Medicago truncatula RepID=G7LIP5_MEDTR | SoyBase | E_val: 2.00E-160 | ISS |
| UniRef100_UPI0002338145 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338145 related cluster n=1 Tax=unknown RepID=UPI0002338145 | SoyBase | E_val: 0 | ISS |
|
Glyma08g12191 not represented in the dataset |
Glyma08g12191 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma05g29040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g115500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g12191.2 sequence type=transcript gene model=Glyma08g12191 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGGGTGCAAAAAAATATTATACAACAGAAATTTGTTTTCAGTTGTGGCAGGGATTTTTGTCAAGAATAAAAATATCTATCAAGTTAAAAAGGAATTTTTGTCAAAAATAAAAATACCAACTCTCGGGGGGTTTAAGTAGCACAGATGGGGTGCCAATAGCGAAAAAAGCAGCACTAACATGAAGACGCGACTCGCCACAGATGAAGCTGAGTAGCATAGTTAGCAGAAGTGACATTGTGGAGAAGAAAGGCAACTACATACACACACACACCCGTACTTCTCTCGTTTCAGTGCGTATCGCTCACTATTTCGGAACTTCAGTTGAATCATTTTCCACGTTCGGAACCCCAAAACAAATCAAAGTAAGGCTTCATTTGTTAAAGTTTGGGATATTCTCTGTGTTTTGACCCTTGAGCACTAGCTGTTTGATAAAATAATCCAACCATTAGTTTCCATTTATTTGAAATTAATGTTTTCCAACCCTTGAGCACTATCTCGACGATGATTCTGACACTCTTTGACACAGCTGAACAGAGAAACAGACTCCTCGTTCTAGATAAATAGATGAATTTCCGTTGAGAACGTTGTGAAGTTACGAAAATGCTGTTTCTCCAAACCACTGTCTTAACTAGACGCTTCTCACCTTTTTGTGATGCTACTTTGCATCCATTGTCATTACTTAATGTTCAAAATCCTATGTTGGAATGTGCTCACAGTTTTTCTCATTATTCCCCTGTACCTAGCAACCGCACTGTAAAGTCTATATCATGCTCTGTTTCTAGAAAGTCCCATTCAAAACCTGAGCCTGAACCACCCGAACCTGAAGCTAATTCGAACCAAAGAGCAGGGCCTAAGGCGAGAAGCAGAAGTCACCAACCTAAAGATGTGGAATCCAGTAACGACGATAAAAGTTCAGCAGAGACATTCCCCACAACGATTCCCAGGAAGCCGAGGCGTGGTCGTAGAAGTGAAGCAGTGGCAGTGGAAGATTTTGTACGCGATTCGCTCGAGCGCACGTTTGCTGCAATTCGGGAACAAAACAAGGATGCTTTGGAGAGTCATGAAAATATAATGAAGGAGAGGGATGGTGACAGTTCTAAATCTGAAAGCAGCGATAAGGACGATGACAATGATGATGAAGAGGAAGATGGCGGAGAAGGCGTAAGAAATAAGATGGTGATTGAGGAAGAGAGTAAAAACTGGCCATTGGATGCAGATGTTGGGTGGGGAATAAGAGCTTCTGAGTATTTTGAGAAGCATCCAATCAAGAATGTGGTGGGAGAAGATGGGTATGAAATTGACTGGGAAGGGGAGATTGATGACAACTGGGTGCAAGAGATCAACTGTTTGGAATGGGAGAGTTTTGCTTTCCATCCCAGCCCTTTAATTGTCCTTGTCTTTGAACGCTATAACAGGGCATCTGATAACTGGAAAAATTTGAAAGAGCTGGAGAAAGCAGTAAAGGTATTTTGGAGTGCAAAAGATCGGTTGCCTCCCCGGGCGGTTAAGATAGATATCTATATCGAGAGAGATTTGGCATACGCCCTGAAAGTTAGAGAATGTCCTCAAATTTTATTTTTACGGGGTAACAGGGTCGTGTACAGGGAAAAAGAACTCAGAACTGCGGATGAGCTGGTTCAGATGATTGCATTTTTCTATTATAATGCAAAAAAGCCTGCGTGGATAGATGATAAGGCCCTGTATTTTCGTTTTTAATCTTCCCCAATATCATATAGCCCTTGACAACCTGAAGATTGTGTGTCTTTGTAATGAAACAAACAAAATTGGCAGCAATTTTTTTTTTTTTTGTATAAAAAATATCTAAGCAAAACAATCCTGGACTACCAAATTTAGAAATTTTAAGTAGAACAATAGACATTCATATTCATTGTTTTCTCTTCTACGCATTAGCTACTGAGTTTAAAGTCCCTTGGATTGTTGGTTTCTCTCCCTTGGATTAATTAAAAGTCGTATGATTACCATGAAAAGTTAT
>Glyma08g12191.1 sequence type=CDS gene model=Glyma08g12191 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGTTTCTCCAAACCACTGTCTTAACTAGACGCTTCTCACCTTTTTGTGATGCTACTTTGCATCCATTGTCATTACTTAATGTTCAAAATCCTATGTTGGAATGTGCTCACAGTTTTTCTCATTATTCCCCTGTACCTAGCAACCGCACTGTAAAGTCTATATCATGCTCTGTTTCTAGAAAGTCCCATTCAAAACCTGAGCCTGAACCACCCGAACCTGAAGCTAATTCGAACCAAAGAGCAGGGCCTAAGGCGAGAAGCAGAAGTCACCAACCTAAAGATGTGGAATCCAGTAACGACGATAAAAGTTCAGCAGAGACATTCCCCACAACGATTCCCAGGAAGCCGAGGCGTGGTCGTAGAAGTGAAGCAGTGGCAGTGGAAGATTTTGTACGCGATTCGCTCGAGCGCACGTTTGCTGCAATTCGGGAACAAAACAAGGATGCTTTGGAGAGTCATGAAAATATAATGAAGGAGAGGGATGGTGACAGTTCTAAATCTGAAAGCAGCGATAAGGACGATGACAATGATGATGAAGAGGAAGATGGCGGAGAAGGCGTAAGAAATAAGATGGTGATTGAGGAAGAGAGTAAAAACTGGCCATTGGATGCAGATGTTGGGTGGGGAATAAGAGCTTCTGAGTATTTTGAGAAGCATCCAATCAAGAATGTGGTGGGAGAAGATGGGTATGAAATTGACTGGGAAGGGGAGATTGATGACAACTGGGTGCAAGAGATCAACTGTTTGGAATGGGAGAGTTTTGCTTTCCATCCCAGCCCTTTAATTGTCCTTGTCTTTGAACGCTATAACAGGGCATCTGATAACTGGAAAAATTTGAAAGAGCTGGAGAAAGCAGTAAAGGTATTTTGGAGTGCAAAAGATCGGTTGCCTCCCCGGGCGGTTAAGATAGATATCTATATCGAGAGAGATTTGGCATACGCCCTGAAAGTTAGAGAATGTCCTCAAATTTTATTTTTACGGGGTAACAGGGTCGTGTACAGGGAAAAAGAACTCAGAACTGCGGATGAGCTGGTTCAGATGATTGCATTTTTCTATTATAATGCAAAAAAGCCTGCGTGGATAGATGATAAGGCCCTGTATTTTCGTTTTTAA >Glyma08g12191.2 sequence type=CDS gene model=Glyma08g12191 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGTTTCTCCAAACCACTGTCTTAACTAGACGCTTCTCACCTTTTTGTGATGCTACTTTGCATCCATTGTCATTACTTAATGTTCAAAATCCTATGTTGGAATGTGCTCACAGTTTTTCTCATTATTCCCCTGTACCTAGCAACCGCACTGTAAAGTCTATATCATGCTCTGTTTCTAGAAAGTCCCATTCAAAACCTGAGCCTGAACCACCCGAACCTGAAGCTAATTCGAACCAAAGAGCAGGGCCTAAGGCGAGAAGCAGAAGTCACCAACCTAAAGATGTGGAATCCAGTAACGACGATAAAAGTTCAGCAGAGACATTCCCCACAACGATTCCCAGGAAGCCGAGGCGTGGTCGTAGAAGTGAAGCAGTGGCAGTGGAAGATTTTGTACGCGATTCGCTCGAGCGCACGTTTGCTGCAATTCGGGAACAAAACAAGGATGCTTTGGAGAGTCATGAAAATATAATGAAGGAGAGGGATGGTGACAGTTCTAAATCTGAAAGCAGCGATAAGGACGATGACAATGATGATGAAGAGGAAGATGGCGGAGAAGGCGTAAGAAATAAGATGGTGATTGAGGAAGAGAGTAAAAACTGGCCATTGGATGCAGATGTTGGGTGGGGAATAAGAGCTTCTGAGTATTTTGAGAAGCATCCAATCAAGAATGTGGTGGGAGAAGATGGGTATGAAATTGACTGGGAAGGGGAGATTGATGACAACTGGGTGCAAGAGATCAACTGTTTGGAATGGGAGAGTTTTGCTTTCCATCCCAGCCCTTTAATTGTCCTTGTCTTTGAACGCTATAACAGGGCATCTGATAACTGGAAAAATTTGAAAGAGCTGGAGAAAGCAGTAAAGGTATTTTGGAGTGCAAAAGATCGGTTGCCTCCCCGGGCGGTTAAGATAGATATCTATATCGAGAGAGATTTGGCATACGCCCTGAAAGTTAGAGAATGTCCTCAAATTTTATTTTTACGGGGTAACAGGGTCGTGTACAGGGAAAAAGAACTCAGAACTGCGGATGAGCTGGTTCAGATGATTGCATTTTTCTATTATAATGCAAAAAAGCCTGCGTGGATAGATGATAAGGCCCTGTATTTTCGTTTTTAA
>Glyma08g12191.1 sequence type=predicted peptide gene model=Glyma08g12191 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLFLQTTVLTRRFSPFCDATLHPLSLLNVQNPMLECAHSFSHYSPVPSNRTVKSISCSVSRKSHSKPEPEPPEPEANSNQRAGPKARSRSHQPKDVESSNDDKSSAETFPTTIPRKPRRGRRSEAVAVEDFVRDSLERTFAAIREQNKDALESHENIMKERDGDSSKSESSDKDDDNDDEEEDGGEGVRNKMVIEEESKNWPLDADVGWGIRASEYFEKHPIKNVVGEDGYEIDWEGEIDDNWVQEINCLEWESFAFHPSPLIVLVFERYNRASDNWKNLKELEKAVKVFWSAKDRLPPRAVKIDIYIERDLAYALKVRECPQILFLRGNRVVYREKELRTADELVQMIAFFYYNAKKPAWIDDKALYFRF* >Glyma08g12191.2 sequence type=predicted peptide gene model=Glyma08g12191 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLFLQTTVLTRRFSPFCDATLHPLSLLNVQNPMLECAHSFSHYSPVPSNRTVKSISCSVSRKSHSKPEPEPPEPEANSNQRAGPKARSRSHQPKDVESSNDDKSSAETFPTTIPRKPRRGRRSEAVAVEDFVRDSLERTFAAIREQNKDALESHENIMKERDGDSSKSESSDKDDDNDDEEEDGGEGVRNKMVIEEESKNWPLDADVGWGIRASEYFEKHPIKNVVGEDGYEIDWEGEIDDNWVQEINCLEWESFAFHPSPLIVLVFERYNRASDNWKNLKELEKAVKVFWSAKDRLPPRAVKIDIYIERDLAYALKVRECPQILFLRGNRVVYREKELRTADELVQMIAFFYYNAKKPAWIDDKALYFRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
