SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g12180

Feature Type:gene_model
Chromosome:Gm08
Start:8855390
stop:8858113
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g12180
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G55320AT Annotation by Michelle Graham. TAIR10: acyl-activating enzyme 18 | chr1:20634194-20636659 FORWARD LENGTH=511 SoyBaseE_val: 3.00E-99ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009850GO-bp Annotation by Michelle Graham. GO Biological Process: auxin metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016874GO-mf Annotation by Michelle Graham. GO Molecular Function: ligase activity SoyBaseN/AISS
UniRef100_G7LIP4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Acetyl-coenzyme A synthetase n=1 Tax=Medicago truncatula RepID=G7LIP4_MEDTR SoyBaseE_val: 4.00E-118ISS
UniRef100_UPI0002338144UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338144 related cluster n=1 Tax=unknown RepID=UPI0002338144 SoyBaseE_val: 6.00E-144ISS

Expression Patterns of Glyma08g12180
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g12180 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g115400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g12180
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g12180
>Glyma08g12180.1   sequence type=CDS   gene model=Glyma08g12180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCTTTCTTCAAAAGCTTACTACAGTCCAATTGTTGAATTGTGTGGAGGCACTGAGCTCGCATCTAGCTACATTGCAGGAAGTCCCTTGCAGCCTCAAGCTTTTGGAGCATTTAGCACAGCATCAATGACAACTGGTTTTGTCATTTTTGACGAAAATGGAGTTCCTTATCCAGATGATGTTGCTTGTGTTGGGGAAGTGGGCTTATTTCCTCTCTCTCTGGGAGCATCTGACAGATTGCTTAATGCTGACCATGAGAAGGTTACTTTAAGGGAATGCCCATTTATAAAGGGAAGGGGTGATGACACCATGAATCTTGGAGGAATAAAGACAAGTTCTGTAGAAATTGAGAGTGTCTGTGATGGAGCGGATGAATGCATTTTGGTGACAGCTGCAGTTGGTGTTGCAACTGCAAATGGAGGCCCAGAACAACTGGTTATATTTGTAGTTTTAAAGGAAGGATACAATTCCAGTGCAGAAACTCTAAAGATGAAATTCACTAAAGCTATTCAAAGCAACCTTAACCCTTTGCTTAAGGTAAGCCTTGCTAAAATTGTGCCAGAGTTTCCTGGGACATCTTCCAACAAAATACCGAGGAGAGTAATGAGGGATCAAATGAAGCGTGAGCTATCAGTCCAGAGCAGACTTTAG
Predicted protein sequences of Glyma08g12180
>Glyma08g12180.1   sequence type=predicted peptide   gene model=Glyma08g12180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWLSSKAYYSPIVELCGGTELASSYIAGSPLQPQAFGAFSTASMTTGFVIFDENGVPYPDDVACVGEVGLFPLSLGASDRLLNADHEKVTLRECPFIKGRGDDTMNLGGIKTSSVEIESVCDGADECILVTAAVGVATANGGPEQLVIFVVLKEGYNSSAETLKMKFTKAIQSNLNPLLKVSLAKIVPEFPGTSSNKIPRRVMRDQMKRELSVQSRL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo