Glyma08g12150 - SoyBase

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Report for Sequence Feature Glyma08g12150

Feature Type:	gene_model
Chromosome:	Gm08
Start:	8838041
stop:	8841615
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18170	AT	Annotation by Michelle Graham. TAIR10: MAP kinase 7 \| chr2:7908178-7909374 REVERSE LENGTH=368	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004707	GO-mf	Annotation by Michelle Graham. GO Molecular Function: MAP kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0660	KOG	Mitogen-activated protein kinase	JGI		ISS
PTHR24055	Panther	MITOGEN-ACTIVATED PROTEIN KINASE	JGI		ISS
PTHR24055:SF69	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_B9S6A3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Big map kinase/bmk, putative n=1 Tax=Ricinus communis RepID=B9S6A3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KSD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KSD4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g12150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g12150 not represented in the dataset	Glyma08g12150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12150

Paralog	Evidence	Comments
Glyma05g28980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g115200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g12150

Limit To All Plant Sequences

>Glyma08g12150.2   sequence type=transcript   gene model=Glyma08g12150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATGATATATTTATTAATATGATGACTATGGCTATATACTCCTTTTCTTCTCTAGTCTGATCTCGCTTAAATTGAAGACATTTATTATTGTTTATATGATAAGATTTGAAATGATATGAAATCCACTTCTTGAAATCCAATCCATTACCCACTCTATTCTATAGATTATTGCTTGAGCTGTGAAAATTTGATTTTTGTGCAGAACGTTTACTTGAAGCTGCATCAATCGAGGAGGGATTCTTCTTCATCTTTGGATTCGCTTTTGATGCCTCGGAGTCAGAGCTGGGATGAAAGCTGAATTTTGGGGAAAATGGCAACTCTAGTTGAACCTCCCAACAGAATTAAGCCAAAGGGCAAGCATTATTATACAATATGGCAAACATTGTTTGAGATTGATACGAAGTATGTTCCAATTAAACCTATAGGCCGAGGAGCGTATGGCGTGGTGTGCTCTTCGATCAACAGGGAGACCAATGAGAAAGTTGCAATTAAGAAGATTGGTAATATATTTGAGAATTCTATTGATGCATTGAGAACTTTAAGGGAGCTGAAGCTGCTTAGACATATTCGGCATGAGAATGTCATTGCTTTGAAAGATGTTATGATGCCAATCCACAAAACAAGTTTTAAGGATGTCTACCTGGTCTACGAACTCATGGATACAGATCTTCATCAAATTATTAAGTCCTCTCAGCCACTTTCCAATGATCATTGCAAATATTTCTTGTTTCAGCTCCTTCGAGGTCTTAAATACCTTCATTCAGCAAACATTCTTCACCGGGACTTGAAGCCTGGGAATCTGCTCGTCAATGCCAATTGCGATTTGAAAATATGCGACTTTGGGCTTGCACGAACTAATGGAGTTGATGGCCAGTTTATGACAGAGTATGTTGTCACTCGCTGGTATCGTGCACCGGAGCTCTTGTTATGCTGTGACAATTACGGAACCTCTATTGATGTCTGGTCAGTAGGGTGCATTTTTGCTGAGATTCTTGGTAGAAAGCCAATCTTCCCTGGGACTGAGTGTCTCAACCAGCTGAAACTAATTATAAGCGTTCTTGGAAGCCAGCATGAATCTCATCTTGAGTTTATTGATAATGCAAAAGCAAGGAGGTTTATCAAATCACTGCCCTATACTAGGGGCAGACACTTCTCTCAGCTATACCCACAAGCAGATCCATTAGCCATAGATTTGTTGCAAAAAATGCTTGTGTTCGATCCAACCAAGAGAATTACTGTCTTGGAAGCTCTCCAACACCCGTATATGGCTAGCCTATATGATCCAAGGTGCGACCCTCCTGCTCAGGTTCCCATCAGTCTCGACATAGATGAACATTGGGGAGAACCGATGATTAGGGAAATGTTTTGGAATGAGATGCTACATTATCATCCTGAAGCTGCTTCCGCCAATGCATAAATGATTAATTCTTCCAAGGCTTTCAGGTCTTGTTGCTTGTCTCTAGGAGTAGTTCTGTTTTTTCCTAGACAAACTGTAATCTTAAAAGGATTTAACTACCGAATTTTGTACTTTGTATGAGATTGCTTTAGTACTTTTTTAATTTGGCGTCTCCACAAGGATAATGGCCTCTTGTAACTTGTATATAGCCATGCATACTGTTTTTGGTGTTTCGGTTAAACCCATTTGAACTAGTGTCGTTCATTAGTTGTTTCCTAACATTTAACAGAAAAGAGTAAGATAATTTGTGCTTTCAAATACA

Coding sequences of Glyma08g12150

Limit To All Plant Sequences

>Glyma08g12150.1   sequence type=CDS   gene model=Glyma08g12150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTCTAGTTGAACCTCCCAACAGAATTAAGCCAAAGGGCAAGCATTATTATACAATATGGCAAACATTGTTTGAGATTGATACGAAGTATGTTCCAATTAAACCTATAGGCCGAGGAGCGTATGGCGTGGTGTGCTCTTCGATCAACAGGGAGACCAATGAGAAAGTTGCAATTAAGAAGATTGGTAATATATTTGAGAATTCTATTGATGCATTGAGAACTTTAAGGGAGCTGAAGCTGCTTAGACATATTCGGCATGAGAATGTCATTGCTTTGAAAGATGTTATGATGCCAATCCACAAAACAAGTTTTAAGGATGTCTACCTGGTCTACGAACTCATGGATACAGATCTTCATCAAATTATTAAGTCCTCTCAGCCACTTTCCAATGATCATTGCAAATATTTCTTGTTTCAGCTCCTTCGAGGTCTTAAATACCTTCATTCAGCAAACATTCTTCACCGGGACTTGAAGCCTGGGAATCTGCTCGTCAATGCCAATTGCGATTTGAAAATATGCGACTTTGGGCTTGCACGAACTAATGGAGTTGATGGCCAGTTTATGACAGAGTATGTTGTCACTCGCTGGTATCGTGCACCGGAGCTCTTGTTATGCTGTGACAATTACGGAACCTCTATTGATGTCTGGTCAGTAGGGTGCATTTTTGCTGAGATTCTTGGTAGAAAGCCAATCTTCCCTGGGACTGAGTGTCTCAACCAGCTGAAACTAATTATAAGCGTTCTTGGAAGCCAGCATGAATCTCATCTTGAGTTTATTGATAATGCAAAAGCAAGGAGGTTTATCAAATCACTGCCCTATACTAGGGGCAGACACTTCTCTCAGCTATACCCACAAGCAGATCCATTAGCCATAGATTTGTTGCAAAAAATGCTTGTGTTCGATCCAACCAAGAGAATTACTGTCTTGGAAGCTCTCCAACACCCGTATATGGCTAGCCTATATGATCCAAGGTGCGACCCTCCTGCTCAGGTTCCCATCAGTCTCGACATAGATGAACATTGGGGAGAACCGATGATTAGGGAAATGTTTTGGAATGAGATGCTACATTATCATCCTGAAGCTGCTTCCGCCAATGCATAA

>Glyma08g12150.2   sequence type=CDS   gene model=Glyma08g12150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTCTAGTTGAACCTCCCAACAGAATTAAGCCAAAGGGCAAGCATTATTATACAATATGGCAAACATTGTTTGAGATTGATACGAAGTATGTTCCAATTAAACCTATAGGCCGAGGAGCGTATGGCGTGGTGTGCTCTTCGATCAACAGGGAGACCAATGAGAAAGTTGCAATTAAGAAGATTGGTAATATATTTGAGAATTCTATTGATGCATTGAGAACTTTAAGGGAGCTGAAGCTGCTTAGACATATTCGGCATGAGAATGTCATTGCTTTGAAAGATGTTATGATGCCAATCCACAAAACAAGTTTTAAGGATGTCTACCTGGTCTACGAACTCATGGATACAGATCTTCATCAAATTATTAAGTCCTCTCAGCCACTTTCCAATGATCATTGCAAATATTTCTTGTTTCAGCTCCTTCGAGGTCTTAAATACCTTCATTCAGCAAACATTCTTCACCGGGACTTGAAGCCTGGGAATCTGCTCGTCAATGCCAATTGCGATTTGAAAATATGCGACTTTGGGCTTGCACGAACTAATGGAGTTGATGGCCAGTTTATGACAGAGTATGTTGTCACTCGCTGGTATCGTGCACCGGAGCTCTTGTTATGCTGTGACAATTACGGAACCTCTATTGATGTCTGGTCAGTAGGGTGCATTTTTGCTGAGATTCTTGGTAGAAAGCCAATCTTCCCTGGGACTGAGTGTCTCAACCAGCTGAAACTAATTATAAGCGTTCTTGGAAGCCAGCATGAATCTCATCTTGAGTTTATTGATAATGCAAAAGCAAGGAGGTTTATCAAATCACTGCCCTATACTAGGGGCAGACACTTCTCTCAGCTATACCCACAAGCAGATCCATTAGCCATAGATTTGTTGCAAAAAATGCTTGTGTTCGATCCAACCAAGAGAATTACTGTCTTGGAAGCTCTCCAACACCCGTATATGGCTAGCCTATATGATCCAAGGTGCGACCCTCCTGCTCAGGTTCCCATCAGTCTCGACATAGATGAACATTGGGGAGAACCGATGATTAGGGAAATGTTTTGGAATGAGATGCTACATTATCATCCTGAAGCTGCTTCCGCCAATGCATAA

Predicted protein sequences of Glyma08g12150

Limit To All Plant Sequences

>Glyma08g12150.1   sequence type=predicted peptide   gene model=Glyma08g12150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLVEPPNRIKPKGKHYYTIWQTLFEIDTKYVPIKPIGRGAYGVVCSSINRETNEKVAIKKIGNIFENSIDALRTLRELKLLRHIRHENVIALKDVMMPIHKTSFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTNGVDGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRKPIFPGTECLNQLKLIISVLGSQHESHLEFIDNAKARRFIKSLPYTRGRHFSQLYPQADPLAIDLLQKMLVFDPTKRITVLEALQHPYMASLYDPRCDPPAQVPISLDIDEHWGEPMIREMFWNEMLHYHPEAASANA*

>Glyma08g12150.2   sequence type=predicted peptide   gene model=Glyma08g12150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLVEPPNRIKPKGKHYYTIWQTLFEIDTKYVPIKPIGRGAYGVVCSSINRETNEKVAIKKIGNIFENSIDALRTLRELKLLRHIRHENVIALKDVMMPIHKTSFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTNGVDGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRKPIFPGTECLNQLKLIISVLGSQHESHLEFIDNAKARRFIKSLPYTRGRHFSQLYPQADPLAIDLLQKMLVFDPTKRITVLEALQHPYMASLYDPRCDPPAQVPISLDIDEHWGEPMIREMFWNEMLHYHPEAASANA*

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