Glyma08g12120 - SoyBase

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Report for Sequence Feature Glyma08g12120

Feature Type:	gene_model
Chromosome:	Gm08
Start:	8806792
stop:	8815833
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19820	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr5:6695731-6701247 REVERSE LENGTH=1116	SoyBase	E_val: 0	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0052541	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process	SoyBase	N/A	ISS
GO:0052546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0030089	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: phycobilisome	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
KOG2171	KOG	Karyopherin (importin) beta 3	JGI		ISS
PTHR10527	Panther	IMPORTIN BETA	JGI		ISS
PTHR10527:SF5	Panther	IMPORTIN BETA-1	JGI		ISS
PF02985	PFAM	HEAT repeat	JGI		ISS
UniRef100_G7LIN4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ran-binding protein n=1 Tax=Medicago truncatula RepID=G7LIN4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KSC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSC8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g12120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12120

Paralog	Evidence	Comments
Glyma05g28950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g114900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g12120

Limit To All Plant Sequences

>Glyma08g12120.1   sequence type=CDS   gene model=Glyma08g12120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTGAGGTGCAGCAATCGCAGGTCGCCGCCATTCTTGGCGCCGATCCCTCCCCCTTCCAGACACTGATCTCGCACCTCATGTCCTCCTCCAACGAGCAACGCTCCCACGCAGAGACTCTTTTCAACCTCTGCAAGCAAACCGATCCCGATAACCTCTCCTTAAAGCTTGCACATCTCCTTCACTCCTCGCCGCACCAGGAGGCACGGGCCATGTCCGCCATCCTCCTCCGGAAACAGCTCACCCGCGACGACTCTTACCTCTGGCCGCGCCTCTCCCCTCAGACGCAGTCTTCCCTCAAATCGCTCCTCCTCTCCTCGATTCAATCGGAAAACATCAAATCCATCTCCAAGAAGCTCTGCGACACCATCTCTGAACTCGCCTCTGGTATTTTACCCGACAACGCCTGGCCGGAGCTTCTTCCTTTCATGTTCCAGTGTGTTTCCTCCGATTCCCCTAAGCTTCAGGAATCCGCGTTTTTAATCTTCGCGCAGTTGTCGCAGTACATCGGCGATTCCCTCACTCCTCACATCAAGCACCTCCACGATATCTTTTTACAGTGCCTCACGAACGCTACCGTTAACCCTGACGTCCGAATTGCGGCGCTTAACGCCGTTATCAATTTCATCCAGTGCTTATCCGGTTCCGCCGATCGCGACCGCTTCCAGGACCTGCTGCCCGCGATGATGCGGACGTTGACCGAGGCGCTTAATTCCGGCCAGGAGGCCACCGCTCAGGAGGCGCTCGAGCTTCTCATCGAGCTCGCCGGGACCGAGCCGAGGTTTCTGCGGAGGCAGCTTGTGGATGTCGTTGGTGCTATGTTGCAGATTGCTGAGGCCGAGTCGCTTGAGGAAGGGACTCGGCATTTGGCGATTGAGTTTGTGATTACCCTCGCGGAGGCGAGGGAGCGCGCCCCCGGGATGATGAGGAAGTTGCCGCAGTTTATTAGTAGGTTGTTCACCATACTCATGAAAATGCTTCTTGATATCGAGGATGATCCTGCGTGGCACAGTGCTGAGACTGAGGATGAGGATGCTGGTGAAACCAGTAATTATAGTGTGGGACAAGAGTGCTTGGATAGGCTCTCTATATCTTTGGGTGGAAACACCATTGTTCCTGTTGCGTCTGAACAGTTGCCTGCTTACTTGGCTGCTCCCGAATGGCAGAAACGCCATGCTGCACTTATTGCACTTGCTCAGATAGCTGAGGGCTGCTCAAAGGTCATGATAAAGAATTTGGAGCAAGTGGTGGCTATGGTCCTGACTTCCTTCCCTGACCAACACCCCCGTGTAAGGTGGGCAGCTATTAATGCAATTGGGCAGCTGTCTACTGATTTGGGTCCTGATTTGCAAGTTAAATATCATCAAGGAGTGTTGCCAGCACTAGCTGGTGCCATGGATGATTTTCAGAACCCTCGTGTGCAGGCACATGCTGCTTCAGCAGTTCTCAACTTCAGCGAGAACTGCACACCTGATATCTTAACGCCATACTTGGATGGAATAGTTAGCAAACTACTTGTACTTCTTCAGAATGGTAAGCAGATGGTGCAAGAAGGTGCCTTAACTGCTTTGGCATCAGTTGCTGATTCTTCTCAGGAACACTTCCAAAAATATTATGATGCTGTAATGCCATATCTGAAAGCTATATTGGTTAATGCAACCGACAAGTCTAACCGTATGCTTCGTGCTAAGTCCATGGAGTGTATAAGTTTAGTTGGAATGGCTGTTGGGAAGGAGAAGTTTAGGGCTGATGCTAAGCAGGTTATGGAAGTTCTTATGTCCCTTCAAGTATCTCAAATGGAGACAGATGATCCAACAACAAGTTACATGCTACAGGCATGGGCTAGACTCTGCAAATGTCTGGGACAAGATTTTCTTCCTTACATGGAGTTTGTCATGCCTCCACTACTTCAATCTGCTGCACTTAAGCCCGATGTAACCATTACATCAGCAGATTCAGACAATGATATTGAGGATTCTGATGATGAAAGTATGGAGACTATTACTCTTGGGGACAAGCGAATTGGAATCAAGACTAGTGTTCTAGAGGAAAAAGCTACAGCATGTAACATGCTTTGTTGCTATGCTGATGAGCTGAAGGAAGGATTCTTTCCATGGATTGATCAGGTTGCTGGAACTTTAGTTCCACTCCTTAAATTTTATTTCCACGAGGAGGTTAGAAAAGCAGCTGTTTCAGCAATGCCGGAGCTATTACGATCTGCAAAATTAGCTATTGAGAAGGGACAATCTCAAGGTCGGGACGTAACCTATTTGAAATTTTTGACTGACAGTATCATCCCAGCTTTGGTGGAAGCATTGCACAAGGAACCTGACACAGAGATTTGTGCAAGCATGTTGGATTCATTAAATGAATGCTTACAGATATCTGGAATGCTTTTGGACGAAAGCCAGGTCAGATCCATCGTGGATGAGATAAAACAGGTGATCACAGCTAGTTCAAGTAGAAAACGAGAGAGAGCAGAGAGGACCCAAGCTGAAGATTTTGATGCTGAAGAGGGGGACCTGATTAAAGAGGAAAATGAACAAGAGGAAGAAGTTTTTGATCAAGTGGGTGAGATATTAGGAACTTTAATCAAAACCTTCAAAGCCAACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGGGGAAGGGACAAGACTCCTGAAGAGAGAAGAATTGCAATTTGTATTTTTGATGATGTTGCAGAGCAGTGTCGTGAAGCTGCTATTAAGTATTATGATACCTATCTCCCATTCCTGTTGGAGGCTTGTAATGATGAGACTCCTGATGTCAGACAGGCAGCTGTGTATGGTCTCGGTGTTTGTGCAGAGTTTGGTGGATCTGTGTTCAAACCTCTGGTTGGAGAGGCTCTTTTGAGGTTAAATGCTGTGATCCAGCATCCTAATGCTCTTCATTCAGATAATGTAATGGCATATGACAATGCCGTTTCCGCTCTGGGAAAAATTTGCCAATTTCATCGTGACAGTATTGATTCTGCCCAGGTAGTTCCTGCATGGCTAAACTGTTTGCCAATCAAAGGTGATTTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGATCTGACAGTGAGCTGTTGGGTCCAAACAATCAATACCTTCCAAAAATAGTTTCAGTGTTTGCTGAGGTTTTATGTGCTGGTAAGGACCTTGCAACAGAACAGACAGCTGGTCGTATGGTTAATTTACTCAGACAGCTCCAGCAAACTTTACCACCCTCTACACTTGCTTCTACTTGGTCATCTTTGCAGCCCCAGCAACAGCTTGCATTGCAATCTATCCTTTCTTCATAG

Predicted protein sequences of Glyma08g12120

Limit To All Plant Sequences

>Glyma08g12120.1   sequence type=predicted peptide   gene model=Glyma08g12120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPEVQQSQVAAILGADPSPFQTLISHLMSSSNEQRSHAETLFNLCKQTDPDNLSLKLAHLLHSSPHQEARAMSAILLRKQLTRDDSYLWPRLSPQTQSSLKSLLLSSIQSENIKSISKKLCDTISELASGILPDNAWPELLPFMFQCVSSDSPKLQESAFLIFAQLSQYIGDSLTPHIKHLHDIFLQCLTNATVNPDVRIAALNAVINFIQCLSGSADRDRFQDLLPAMMRTLTEALNSGQEATAQEALELLIELAGTEPRFLRRQLVDVVGAMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFISRLFTILMKMLLDIEDDPAWHSAETEDEDAGETSNYSVGQECLDRLSISLGGNTIVPVASEQLPAYLAAPEWQKRHAALIALAQIAEGCSKVMIKNLEQVVAMVLTSFPDQHPRVRWAAINAIGQLSTDLGPDLQVKYHQGVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPYLKAILVNATDKSNRMLRAKSMECISLVGMAVGKEKFRADAKQVMEVLMSLQVSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMEFVMPPLLQSAALKPDVTITSADSDNDIEDSDDESMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAGTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGQSQGRDVTYLKFLTDSIIPALVEALHKEPDTEICASMLDSLNECLQISGMLLDESQVRSIVDEIKQVITASSSRKRERAERTQAEDFDAEEGDLIKEENEQEEEVFDQVGEILGTLIKTFKANFLPFFDELSSYLTPMWGRDKTPEERRIAICIFDDVAEQCREAAIKYYDTYLPFLLEACNDETPDVRQAAVYGLGVCAEFGGSVFKPLVGEALLRLNAVIQHPNALHSDNVMAYDNAVSALGKICQFHRDSIDSAQVVPAWLNCLPIKGDLIEAKVVHDQLCSMAERSDSELLGPNNQYLPKIVSVFAEVLCAGKDLATEQTAGRMVNLLRQLQQTLPPSTLASTWSSLQPQQQLALQSILSS*

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