Glyma08g12080 - SoyBase

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Report for Sequence Feature Glyma08g12080

Feature Type:	gene_model
Chromosome:	Gm08
Start:	8727007
stop:	8732166
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38500	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF616) \| chr4:18008418-18010693 FORWARD LENGTH=499	SoyBase	E_val: 0	ISS
GO:0006672	GO-bp	Annotation by Michelle Graham. GO Biological Process: ceramide metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PTHR12956	Panther	ALKALINE CERAMIDASE-RELATED	JGI		ISS
PTHR12956:SF12	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04765	PFAM	Protein of unknown function (DUF616)	JGI		ISS
UniRef100_E4MX43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-13-M05 n=1 Tax=Eutrema halophilum RepID=E4MX43_THEHA	SoyBase	E_val: 0	ISS
UniRef100_I1KSC3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSC3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g12080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12080

Paralog	Evidence	Comments
Glyma05g28910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g114500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g12080

Limit To All Plant Sequences

>Glyma08g12080.2   sequence type=transcript   gene model=Glyma08g12080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCGGGCTCATCAGGGCTGGGACACTAGTTCCAGTTCCATACAGCCCATTCCAAATTGCTCCACCCTCTTAATTTGGGCCTTTGTTCCTCCTCAATCAATTCACAATAAAAATTAAAGCTGATAAAAGTAAAACAAGAGATTCTGCTTCTGCATCTTCCATGATCCTATTTCTGTGATGAACCCGGATGAGTGTTGATGAGAAAACAAAGGATAGAGGGAGATCTGTTTAAGTTTGAAAACATCTCTTCGTCACAGTCTTTGTTCTTTCTAGTTTTATCTCTTTTGTTGTTGTTGGAAGGAACCCGACACAACTTTACACAGTTTACACAGATCTGTTCCTTTTTGACACTGTCAACAGAACTATCCTTTCATTCACTGCCGCCAGTGATGATAACTTGAAGAAAGAATCAGATATGGAGGGTGATCTTCAAAGGGCTCTATCTTTGCGCCTAAATCGTAGAGGAGACCGAAGTAATCAAAGTCCTGCTAAAGATTTTGAGGTGGGCTTCTTTTCTTCAGGGAGGGTACCTCAGGATTACCCCATGAAGATTGTTTGGAAAAAAGGGTTTGTTCGGTTGGTTCTTGTAGCAGGGATCTTGTGGATGTTATTAATTCTTCTTGCATTATTGTTCCATATATGGTCTTGTCAAACTTCCGTCTCCTTTTTATCAGCTATGTGTAACAAAGATAGCAAGGTTTTCAACATGTTAGACAATATGGGACTTGTATCAAAACCTCACAGATGTCCAATTCCTCTTTCCAATGACCCTGATAAAATAGTTATCCCAACTGGAAGAACTCCCAACGAAACTGTCAAAAATCTGTCATATGTTATGGAAGATGAGGTTCCACATAGTGAAGCTCAGTCATCTCCTCTATTTGGAGGCCATCCAAGTTGGAAACAAAGGGAGGAAAGTTTTAAACTAAAGTCAAATATGAAGGTGCATTGTGGATTCATCCAAGGTGGTGGTGCTGAAATGAATCGTGTAGACATCAAATATGTCAAGAAATGCAAATTTGTTGTTGCATCTGGAATTTTTGATGGCTATGATTTACCTCATCAACCATCAAATATAAGCCTTCGCTCAAAGGAGCTTTTTTGCTTCCTTATGGTTGTGGATGAGGTATCTCTAAAATTCATGAGGGAAAATGGTACGGTCAAAGAAGACAGAGCTGGTGGAAAATGGGTGGGAATATGGAGACTTGTTCTTCTTAAGCATCCTCCTTATGATGAACCAAGAAGGAATGGGAAGGTTCCCAAAATTTTAACCCACAGGTTGTTCCCTCAAGCACAGTATAGCATTTGGATTGATGGTAAAATGGAGCTGATAGTAGATCCATTGCTAATCCTTGAGAGATACCTGTGGCGAGGCAAGCATACGTTTGCCATTGCTCAACACAAGCATCACCGTAGTATATATGAGGAGGCTGATTCAAACAAGAGCGAAAGCGATATGCTCGACCCCTTATTGATCTCCACATGAAAATCTATTATTATGAGGGAATGAAGCCATGGAGCTCAAATAAAAAGACCAATAGTGATGTACCAGAGGGAGCCGTCATCATTCGGGAACACACTGCCATAAATAACTTATTTAGCTGCTTGTGGTTCAATGAGGTTCACCTCTTCACTCCCAGAGATCAACTGAGTTTTGGCTATGTTGCATACAGATTGGGGGACGCGTTCAAATTCTTCATGTTTCTCAACTGTGAATACAATTCACTGTTTGTGTTGCACCCTCACACAAGAGAGCACTCTTCTCCCATAGAATGGGTTAAACAGTTGGATGAACTTAAGAAAGGCAATTTAAAAGAAAGTAGGGGAGGACTAGGCTTGTTTACCCCTTATCCTGGGGATCTTGATTCTGTTGTTCTGCCAAATGTAACAAGAACATCAAAAGCAGGCTGACATTTTGTTTATTGTTTAACATATTCATTTTGTCATGTATTTTTTTTTCCAAGAATTTCTTGATCTTTATTTTGCTTAATCTTAATGAAAGTAAAGATAAGGCTCTTCAAATTTATTTGTTTTTTTAAAAGTAAAGAGCCTTTATAATATCCT

Coding sequences of Glyma08g12080

Limit To All Plant Sequences

>Glyma08g12080.1   sequence type=CDS   gene model=Glyma08g12080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTGATCTTCAAAGGGCTCTATCTTTGCGCCTAAATCGTAGAGGAGACCGAAGTAATCAAAGTCCTGCTAAAGGGAGGGTACCTCAGGATTACCCCATGAAGATTGTTTGGAAAAAAGGGTTTGTTCGGTTGGTTCTTGTAGCAGGGATCTTGTGGATGTTATTAATTCTTCTTGCATTATTGTTCCATATATGGTCTTGTCAAACTTCCGTCTCCTTTTTATCAGCTATGTGTAACAAAGATAGCAAGGTTTTCAACATGTTAGACAATATGGGACTTGTATCAAAACCTCACAGATGTCCAATTCCTCTTTCCAATGACCCTGATAAAATAGTTATCCCAACTGGAAGAACTCCCAACGAAACTGTCAAAAATCTGTCATATGTTATGGAAGATGAGGTTCCACATAGTGAAGCTCAGTCATCTCCTCTATTTGGAGGCCATCCAAGTTGGAAACAAAGGGAGGAAAGTTTTAAACTAAAGTCAAATATGAAGGTGCATTGTGGATTCATCCAAGGTGGTGGTGCTGAAATGAATCGTGTAGACATCAAATATGTCAAGAAATGCAAATTTGTTGTTGCATCTGGAATTTTTGATGGCTATGATTTACCTCATCAACCATCAAATATAAGCCTTCGCTCAAAGGAGCTTTTTTGCTTCCTTATGGTTGTGGATGAGGTATCTCTAAAATTCATGAGGGAAAATGGTACGGTCAAAGAAGACAGAGCTGGTGGAAAATGGGTGGGAATATGGAGACTTGTTCTTCTTAAGCATCCTCCTTATGATGAACCAAGAAGGAATGGGAAGGTTCCCAAAATTTTAACCCACAGGTTGTTCCCTCAAGCACAGTATAGCATTTGGATTGATGGTAAAATGGAGCTGATAGTAGATCCATTGCTAATCCTTGAGAGATACCTGTGGCGAGGCAAGCATACGTTTGCCATTGCTCAACACAAGCATCACCGTAAGCGAAAGCGATATGCTCGACCCCTTATTGATCTCCACATGAAAATCTATTATTATGAGGGAATGAAGCCATGGAGCTCAAATAAAAAGACCAATAGTGATGTACCAGAGGGAGCCGTCATCATTCGGGAACACACTGCCATAAATAACTTATTTAGCTGCTTGTGGTTCAATGAGGTTCACCTCTTCACTCCCAGAGATCAACTGAGTTTTGGCTATGTTGCATACAGATTGGGGGACGCGTTCAAATTCTTCATGTTTCTCAACTGTGAATACAATTCACTGTTTGTGTTGCACCCTCACACAAGAGAGCACTCTTCTCCCATAGAATGGGTTAAACAGTTGGATGAACTTAAGAAAGGCAATTTAAAAGAAAGTAGGGGAGGACTAGGCTTGTTTACCCCTTATCCTGGGGATCTTGATTCTGTTGTTCTGCCAAATGTAACAAGAACATCAAAAGCAGGCTGA

>Glyma08g12080.2   sequence type=CDS   gene model=Glyma08g12080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGGTGATCTTCAAAGGGCTCTATCTTTGCGCCTAAATCGTAGAGGAGACCGAAGTAATCAAAGTCCTGCTAAAGATTTTGAGGTGGGCTTCTTTTCTTCAGGGAGGGTACCTCAGGATTACCCCATGAAGATTGTTTGGAAAAAAGGGTTTGTTCGGTTGGTTCTTGTAGCAGGGATCTTGTGGATGTTATTAATTCTTCTTGCATTATTGTTCCATATATGGTCTTGTCAAACTTCCGTCTCCTTTTTATCAGCTATGTGTAACAAAGATAGCAAGGTTTTCAACATGTTAGACAATATGGGACTTGTATCAAAACCTCACAGATGTCCAATTCCTCTTTCCAATGACCCTGATAAAATAGTTATCCCAACTGGAAGAACTCCCAACGAAACTGTCAAAAATCTGTCATATGTTATGGAAGATGAGGTTCCACATAGTGAAGCTCAGTCATCTCCTCTATTTGGAGGCCATCCAAGTTGGAAACAAAGGGAGGAAAGTTTTAAACTAAAGTCAAATATGAAGGTGCATTGTGGATTCATCCAAGGTGGTGGTGCTGAAATGAATCGTGTAGACATCAAATATGTCAAGAAATGCAAATTTGTTGTTGCATCTGGAATTTTTGATGGCTATGATTTACCTCATCAACCATCAAATATAAGCCTTCGCTCAAAGGAGCTTTTTTGCTTCCTTATGGTTGTGGATGAGGTATCTCTAAAATTCATGAGGGAAAATGGTACGGTCAAAGAAGACAGAGCTGGTGGAAAATGGGTGGGAATATGGAGACTTGTTCTTCTTAAGCATCCTCCTTATGATGAACCAAGAAGGAATGGGAAGGTTCCCAAAATTTTAACCCACAGGTTGTTCCCTCAAGCACAGTATAGCATTTGGATTGATGGTAAAATGGAGCTGATAGTAGATCCATTGCTAATCCTTGAGAGATACCTGTGGCGAGGCAAGCATACGTTTGCCATTGCTCAACACAAGCATCACCGTAGTATATATGAGGAGGCTGATTCAAACAAGAGCGAAAGCGATATGCTCGACCCCTTATTGATCTCCACATGA

Predicted protein sequences of Glyma08g12080

Limit To All Plant Sequences

>Glyma08g12080.1   sequence type=predicted peptide   gene model=Glyma08g12080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGDLQRALSLRLNRRGDRSNQSPAKGRVPQDYPMKIVWKKGFVRLVLVAGILWMLLILLALLFHIWSCQTSVSFLSAMCNKDSKVFNMLDNMGLVSKPHRCPIPLSNDPDKIVIPTGRTPNETVKNLSYVMEDEVPHSEAQSSPLFGGHPSWKQREESFKLKSNMKVHCGFIQGGGAEMNRVDIKYVKKCKFVVASGIFDGYDLPHQPSNISLRSKELFCFLMVVDEVSLKFMRENGTVKEDRAGGKWVGIWRLVLLKHPPYDEPRRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRKRKRYARPLIDLHMKIYYYEGMKPWSSNKKTNSDVPEGAVIIREHTAINNLFSCLWFNEVHLFTPRDQLSFGYVAYRLGDAFKFFMFLNCEYNSLFVLHPHTREHSSPIEWVKQLDELKKGNLKESRGGLGLFTPYPGDLDSVVLPNVTRTSKAG*

>Glyma08g12080.2   sequence type=predicted peptide   gene model=Glyma08g12080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGDLQRALSLRLNRRGDRSNQSPAKDFEVGFFSSGRVPQDYPMKIVWKKGFVRLVLVAGILWMLLILLALLFHIWSCQTSVSFLSAMCNKDSKVFNMLDNMGLVSKPHRCPIPLSNDPDKIVIPTGRTPNETVKNLSYVMEDEVPHSEAQSSPLFGGHPSWKQREESFKLKSNMKVHCGFIQGGGAEMNRVDIKYVKKCKFVVASGIFDGYDLPHQPSNISLRSKELFCFLMVVDEVSLKFMRENGTVKEDRAGGKWVGIWRLVLLKHPPYDEPRRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADSNKSESDMLDPLLIST*

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