Glyma08g12070 - SoyBase

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Report for Sequence Feature Glyma08g12070

Feature Type:	gene_model
Chromosome:	Gm08
Start:	8720780
stop:	8726745
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g12070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25650	AT	Annotation by Michelle Graham. TAIR10: ACD1-like \| chr4:13081021-13083153 REVERSE LENGTH=536	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0010277	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyllide a oxygenase [overall] activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0051537	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 2 iron, 2 sulfur cluster binding	SoyBase	N/A	ISS
PTHR21266	Panther	IRON-SULFUR DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR21266:SF3	Panther	PHEOPHORBIDE A OXYGENASE	JGI		ISS
PF00355	PFAM	Rieske [2Fe-2S] domain	JGI		ISS
PF08417	PFAM	Pheophorbide a oxygenase	JGI		ISS
UniRef100_G7LIM7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pheophorbide a oxygenase n=1 Tax=Medicago truncatula RepID=G7LIM7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KSC2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KSC2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g12070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g12070

Paralog	Evidence	Comments
Glyma05g28900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g12070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g114400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g12070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g12070

Limit To All Plant Sequences

>Glyma08g12070.1   sequence type=CDS   gene model=Glyma08g12070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCTGTGTATGCTTTTTCTGTTGGCACACTTCACATCCCGACAGCACATGAAACACCAAACTCATTTAGGAAATCTATATTCTTGAGCAACCAAGTGGCTTCACCAGTTTCATTGGTTCTCAGGGGCGCTTCAAAATCCAAGCTTTTCACTGCCTTGTCACCCCCTCCATTGACAGAATCCAGCAACAACCAACCTGAGGAGGCTGAGCCAGAATTTGAAAGTCATGCAGAGAAATTTGACTGGTACTCTCACTGGTACCCTTTGATGCCAATTTGTGACCTTGACAAGAGGAAGCCTCATGGGAAGAGGGTGTTGGGAATTGATGTGGTTGTGTGGTGGGATAGGAATGAGGGTGTTTGGCAGGTTCATGATGATGCTTGTCCTCATAGATTAGCACCCTTGTCTGATGGAAGGATTGATCAATGGGGCAGGTTGCAGTGTGTGTACCATGGTTGGTGTTTCAATGGCAAAGGAGAATGCAAGCTCATTCCCCAGGCACCCCCTGATGGCCCTCCGGTACATACGTCCAAAAAAGCATGTGTAGCTGCTTACCCAAGTACTGTACAGAATGATATCTTGTGGTTCTGGCCCAATACTGATCCTCAATACAAAGATATTATTACAAGAAAAAGACCCCCATACATACCAGAATTAGATGATCCATCGTATACTAAATTAATGGGAAACAGAGACATTTCTTATGGGTATGAAGTACTGATAGAAAATCTTATGGACCCTGCACATGTTCCATATGCACACTATGGACTAATGCGTACTCCGAAACCAAAAGTGAAAGTTGATAGAGAAGGGGGCAGGCCACTTGAATTGTCTATTGAAACGTTAGATATCAATGGTTTTACTGCAAATCAGGGTTGGAGTAAAAGTAAATTTATGCCACCATGCATTTTTTATGTATATACTGATTCAGATCAACCTGCCTCATCTGCTGAAACTCAGAAATCATCAGCTCAGAAGAAGTTTGCTTTAATCTTTGTTTGTGTTCCGGTTAGTCCTGGTAAAAGCAGATTGATATGGTGCTTCCCAAGAAACTTTGGAGTGTGGATTGACAAAATTGTGCCACGATGGATATTTCATGTTGGACAAAACCGGATTCTAGATTCAGATTTATATCTTCTCCATGTTGAGGAACAAAAAATAGTTGATATTGGTCCAAAGAATTGGCACAAAGCCTGTTTTGTGCCAACAAAGTCAGATGCCCTTGTTATTGGTTATAGAAATTGGTTAAAGAAGTATGCAGGTGGTCAGGTTGATTGGAGAGGAAAATATAGTGGGGCTCTCCCTCCAACACCTCCAAGAGAACAGCTTATGGACAGGTACTGGTCCCATGTGGTGAATTGCAAGAGTTGCAATTCTGCTTATAAGAGCCTCAATGTGATTGAAGTAATGTTGCAGATCATATCTGTTGCTTCAATTGGGATTGTTGCCATCATGAAGCATGGTACAATGTCAGTGGCAAAAAGAAATTCAATGGTTGCGTTAGCAGTGCTATCATTAGCACTGTCTCGGTGGTTGGCTCACTTCATATACAAAAACTTCCGTTATCATGACTACGAGCATGCCTTCCGCTAA

Predicted protein sequences of Glyma08g12070

Limit To All Plant Sequences

>Glyma08g12070.1   sequence type=predicted peptide   gene model=Glyma08g12070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAVYAFSVGTLHIPTAHETPNSFRKSIFLSNQVASPVSLVLRGASKSKLFTALSPPPLTESSNNQPEEAEPEFESHAEKFDWYSHWYPLMPICDLDKRKPHGKRVLGIDVVVWWDRNEGVWQVHDDACPHRLAPLSDGRIDQWGRLQCVYHGWCFNGKGECKLIPQAPPDGPPVHTSKKACVAAYPSTVQNDILWFWPNTDPQYKDIITRKRPPYIPELDDPSYTKLMGNRDISYGYEVLIENLMDPAHVPYAHYGLMRTPKPKVKVDREGGRPLELSIETLDINGFTANQGWSKSKFMPPCIFYVYTDSDQPASSAETQKSSAQKKFALIFVCVPVSPGKSRLIWCFPRNFGVWIDKIVPRWIFHVGQNRILDSDLYLLHVEEQKIVDIGPKNWHKACFVPTKSDALVIGYRNWLKKYAGGQVDWRGKYSGALPPTPPREQLMDRYWSHVVNCKSCNSAYKSLNVIEVMLQIISVASIGIVAIMKHGTMSVAKRNSMVALAVLSLALSRWLAHFIYKNFRYHDYEHAFR*

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